Wall clock time and date at job start Tue Mar 31 2020 05:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47254 * 2 1 4 4 H 1.09005 * 109.47359 * 56.24263 * 3 2 1 5 5 C 1.50708 * 109.47185 * 176.24232 * 3 2 1 6 6 H 1.07999 * 119.99880 * 120.00183 * 5 3 2 7 7 C 1.37870 * 119.99897 * 300.00203 * 5 3 2 8 8 N 1.31522 * 120.00246 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 120.00181 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47130 * 59.99546 * 9 7 5 11 11 H 1.48500 * 109.47133 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46708 * 299.99948 * 9 7 5 13 13 N 1.46897 * 109.47431 * 296.24129 * 3 2 1 14 14 C 1.46900 * 111.00200 * 154.68001 * 13 3 2 15 15 H 1.08996 * 109.47352 * 36.17504 * 14 13 3 16 16 C 1.52998 * 109.47029 * 276.17166 * 14 13 3 17 17 O 1.42896 * 109.47459 * 295.14500 * 16 14 13 18 18 C 1.53006 * 109.47049 * 156.17249 * 14 13 3 19 19 C 1.50700 * 109.47297 * 294.99904 * 18 14 13 20 20 C 1.38271 * 119.98422 * 89.99782 * 19 18 14 21 21 C 1.38217 * 120.05040 * 179.97438 * 20 19 18 22 22 C 1.38224 * 120.02824 * 359.97438 * 21 20 19 23 23 C 1.38449 * 119.97018 * 0.02562 * 22 21 20 24 24 F 1.35096 * 120.02281 * 179.97438 * 23 22 21 25 25 C 1.38168 * 119.98831 * 269.73284 * 19 18 14 26 26 H 1.09000 * 109.47181 * 55.74351 * 1 2 3 27 27 H 1.08996 * 109.47154 * 295.73761 * 1 2 3 28 28 H 1.09005 * 109.46909 * 175.74041 * 1 2 3 29 29 H 1.09000 * 109.47328 * 120.00224 * 2 1 3 30 30 H 1.09007 * 109.47172 * 239.99892 * 2 1 3 31 31 H 0.96993 * 119.99907 * 180.02562 * 8 7 5 32 32 H 1.00905 * 111.00309 * 278.63818 * 13 3 2 33 33 H 1.08999 * 109.47275 * 55.14849 * 16 14 13 34 34 H 1.08999 * 109.46951 * 175.14558 * 16 14 13 35 35 H 0.96696 * 114.00257 * 179.97438 * 17 16 14 36 36 H 1.09003 * 109.46861 * 55.00276 * 18 14 13 37 37 H 1.09001 * 109.46977 * 174.99994 * 18 14 13 38 38 H 1.08003 * 119.97302 * 0.02562 * 20 19 18 39 39 H 1.07999 * 119.98854 * 180.02562 * 21 20 19 40 40 H 1.07998 * 120.01614 * 179.97438 * 22 21 20 41 41 H 1.08002 * 120.01305 * 359.97066 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6227 1.9754 0.8544 5 6 3.5442 1.4434 0.0931 6 1 4.1335 1.8936 -0.6920 7 6 4.1679 0.8696 1.1805 8 7 3.4502 0.3217 2.1369 9 14 6.0323 0.8714 1.2964 10 1 6.5269 2.2716 1.2967 11 1 6.4509 0.1987 2.5524 12 1 6.6012 0.1458 0.1323 13 7 1.6259 2.1083 -1.2422 14 6 1.5434 3.5632 -1.0574 15 1 2.3368 3.8897 -0.3851 16 6 0.1840 3.9246 -0.4555 17 8 -0.8506 3.5995 -1.3860 18 6 1.7032 4.2591 -2.4107 19 6 3.0882 4.0032 -2.9467 20 6 3.3271 2.9005 -3.7459 21 6 4.5967 2.6648 -4.2387 22 6 5.6292 3.5317 -3.9334 23 6 5.3911 4.6361 -3.1333 24 9 6.3995 5.4838 -2.8338 25 6 4.1177 4.8736 -2.6438 26 1 -0.3633 0.5785 -0.8494 27 1 -0.3633 0.4462 0.9257 28 1 -0.3633 -1.0249 -0.0763 29 1 1.8934 -0.5139 0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 3.8890 -0.0817 2.9021 32 1 2.2474 1.8749 -2.0021 33 1 0.0336 3.3623 0.4661 34 1 0.1551 4.9924 -0.2384 35 1 -1.7417 3.8021 -1.0700 36 1 0.9647 3.8673 -3.1101 37 1 1.5537 5.3318 -2.2875 38 1 2.5207 2.2233 -3.9860 39 1 4.7821 1.8034 -4.8632 40 1 6.6212 3.3471 -4.3183 41 1 3.9298 5.7375 -2.0234 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255157360.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:58 Heat of formation + Delta-G solvation = -84.516892 kcal Electronic energy + Delta-G solvation = -22959.243447 eV Core-core repulsion = 19559.876916 eV Total energy + Delta-G solvation = -3399.366531 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.68209 -39.22800 -37.26735 -35.41807 -33.64550 -31.76239 -30.78727 -30.17906 -28.49732 -25.84177 -25.72115 -22.77804 -22.52918 -21.54925 -19.71184 -19.37263 -17.24464 -16.75991 -16.63324 -16.10491 -15.95766 -15.37911 -14.94048 -14.71032 -14.10532 -13.69663 -13.66860 -13.17478 -13.09600 -12.89694 -12.73946 -12.35765 -12.03613 -11.67771 -11.44087 -11.36478 -11.19310 -11.04164 -10.82801 -10.76410 -10.64518 -10.28228 -10.05816 -9.57656 -9.51497 -9.44496 -8.98825 -8.67914 -8.40003 -8.32840 -7.18872 -5.97330 -4.09943 1.40509 1.44726 3.29268 3.33879 3.38025 3.81484 4.41419 4.44989 4.79375 4.89151 4.98469 5.19487 5.22457 5.30310 5.45252 5.57529 5.57960 5.72211 5.78403 5.95596 6.16661 6.25989 6.28971 6.32098 6.37797 6.44358 6.52200 6.57794 6.65849 6.77657 6.83295 7.13827 7.14721 7.25347 7.49168 7.62429 7.81255 8.07032 8.13420 8.19762 8.38043 8.71030 9.03814 9.58003 11.02301 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.011011 B = 0.008445 C = 0.005576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.249386 B = 3314.772012 C = 5020.438624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.105 4.105 3 C 0.215 3.785 4 H 0.029 0.971 5 C -0.541 4.541 6 H 0.052 0.948 7 C 0.070 3.930 8 N -0.886 5.886 9 Si 0.882 3.118 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.676 5.676 14 C 0.098 3.902 15 H 0.059 0.941 16 C 0.091 3.909 17 O -0.557 6.557 18 C -0.078 4.078 19 C -0.043 4.043 20 C -0.121 4.121 21 C -0.086 4.086 22 C -0.164 4.164 23 C 0.096 3.904 24 F -0.146 7.146 25 C -0.150 4.150 26 H 0.056 0.944 27 H 0.032 0.968 28 H 0.021 0.979 29 H 0.088 0.912 30 H 0.028 0.972 31 H 0.261 0.739 32 H 0.330 0.670 33 H 0.048 0.952 34 H 0.032 0.968 35 H 0.363 0.637 36 H 0.089 0.911 37 H 0.069 0.931 38 H 0.133 0.867 39 H 0.130 0.870 40 H 0.129 0.871 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.119 7.274 -9.318 12.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.143 4.143 3 C 0.107 3.893 4 H 0.047 0.953 5 C -0.581 4.581 6 H 0.071 0.929 7 C -0.133 4.133 8 N -0.524 5.524 9 Si 0.710 3.290 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.308 5.308 14 C -0.013 4.013 15 H 0.077 0.923 16 C 0.012 3.988 17 O -0.360 6.360 18 C -0.116 4.116 19 C -0.044 4.044 20 C -0.139 4.139 21 C -0.104 4.104 22 C -0.182 4.182 23 C 0.077 3.923 24 F -0.124 7.124 25 C -0.169 4.169 26 H 0.075 0.925 27 H 0.051 0.949 28 H 0.041 0.959 29 H 0.106 0.894 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.149 0.851 33 H 0.066 0.934 34 H 0.050 0.950 35 H 0.208 0.792 36 H 0.107 0.893 37 H 0.087 0.913 38 H 0.151 0.849 39 H 0.148 0.852 40 H 0.147 0.853 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.209 6.911 -9.365 12.073 hybrid contribution 1.977 0.483 0.821 2.195 sum -1.232 7.394 -8.544 11.365 Atomic orbital electron populations 1.21715 0.98955 0.98346 1.00518 1.21470 0.92136 0.99232 1.01483 1.19157 0.92380 0.91196 0.86540 0.95262 1.21841 0.92711 1.37647 1.05868 0.92932 1.24891 0.97647 0.95056 0.95685 1.69867 1.34871 1.38052 1.09627 0.86808 0.86544 0.78255 0.77348 1.20404 1.21267 1.20263 1.60977 1.55917 1.04411 1.09487 1.21368 0.94198 0.91390 0.94342 0.92301 1.22244 0.88121 0.96355 0.92037 1.86572 1.16834 1.88133 1.44440 1.20749 0.92087 1.00495 0.98222 1.19827 0.95725 0.93657 0.95152 1.21176 0.97448 0.97284 0.97999 1.20966 0.92315 0.98239 0.98914 1.21055 1.00667 0.95261 1.01263 1.17679 0.84947 0.90220 0.99467 1.91465 1.59372 1.69681 1.91927 1.20976 0.91399 1.01981 1.02539 0.92476 0.94923 0.95936 0.89383 0.95281 0.92918 0.85053 0.93381 0.94995 0.79227 0.89283 0.91265 0.84904 0.85211 0.85324 0.85188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.84 37.16 0.37 -2.49 16 2 C -0.10 -2.50 5.44 -26.74 -0.15 -2.65 16 3 C 0.22 5.19 1.78 -68.87 -0.12 5.07 16 4 H 0.03 0.78 7.01 -51.93 -0.36 0.42 16 5 C -0.54 -14.41 8.28 -34.44 -0.28 -14.69 16 6 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 7 C 0.07 1.90 5.30 -17.82 -0.09 1.81 16 8 N -0.89 -24.91 11.30 55.43 0.63 -24.29 16 9 Si 0.88 21.48 29.54 -169.99 -5.02 16.46 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 N -0.68 -13.71 5.32 -100.95 -0.54 -14.25 16 14 C 0.10 1.75 2.25 -67.71 -0.15 1.60 16 15 H 0.06 1.20 7.66 -51.93 -0.40 0.80 16 16 C 0.09 1.44 6.77 37.16 0.25 1.69 16 17 O -0.56 -8.23 12.83 -35.23 -0.45 -8.68 16 18 C -0.08 -1.17 4.70 -27.88 -0.13 -1.30 16 19 C -0.04 -0.67 4.83 -104.64 -0.51 -1.18 16 20 C -0.12 -1.80 8.03 -39.58 -0.32 -2.12 16 21 C -0.09 -1.20 10.04 -39.59 -0.40 -1.60 16 22 C -0.16 -2.39 10.03 -39.51 -0.40 -2.79 16 23 C 0.10 1.54 7.30 -39.41 -0.29 1.25 16 24 F -0.15 -2.38 17.27 2.25 0.04 -2.34 16 25 C -0.15 -2.36 9.68 -39.52 -0.38 -2.75 16 26 H 0.06 1.16 7.60 -51.93 -0.39 0.76 16 27 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 2.35 5.98 -51.93 -0.31 2.04 16 30 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.26 7.07 8.31 -40.82 -0.34 6.74 16 32 H 0.33 6.69 5.21 -39.29 -0.20 6.48 16 33 H 0.05 0.84 7.29 -51.93 -0.38 0.46 16 34 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.36 3.72 9.12 45.56 0.42 4.13 16 36 H 0.09 1.34 7.68 -51.93 -0.40 0.94 16 37 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 38 H 0.13 1.85 7.55 -52.48 -0.40 1.45 16 39 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 40 H 0.13 1.61 8.06 -52.49 -0.42 1.18 16 41 H 0.13 1.86 8.06 -52.49 -0.42 1.43 16 LS Contribution 337.82 15.07 5.09 5.09 Total: -1.00 -29.30 337.82 -8.21 -37.50 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -5.35 Total: 10.65 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: -2.60 Total: -20.14 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: 0.09 Total: -38.54 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: -0.45 Total: -8.68 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.04 Total: -2.34 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.30 -8.21 -37.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255157360.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.014 kcal (2) G-P(sol) polarization free energy of solvation -29.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds