Wall clock time and date at job start Tue Mar 31 2020 05:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47031 * 2 1 4 4 H 1.09002 * 109.47588 * 305.72095 * 3 2 1 5 5 C 1.50706 * 109.47008 * 185.72802 * 3 2 1 6 6 H 1.08008 * 119.99652 * 240.00288 * 5 3 2 7 7 C 1.37877 * 120.00250 * 59.99471 * 5 3 2 8 8 N 1.31513 * 120.00003 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99961 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.47181 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47362 * 119.99855 * 9 7 5 12 12 H 1.48497 * 109.47133 * 239.99983 * 9 7 5 13 13 N 1.46892 * 109.47739 * 65.72634 * 3 2 1 14 14 C 1.46897 * 111.00233 * 208.30022 * 13 3 2 15 15 H 1.09000 * 109.47385 * 33.75756 * 14 13 3 16 16 C 1.53004 * 109.46721 * 273.75758 * 14 13 3 17 17 O 1.42893 * 109.47388 * 294.99970 * 16 14 13 18 18 C 1.53004 * 109.47390 * 153.76091 * 14 13 3 19 19 C 1.50693 * 109.47017 * 295.00079 * 18 14 13 20 20 C 1.38264 * 119.99172 * 90.00171 * 19 18 14 21 21 C 1.38226 * 120.05295 * 180.02562 * 20 19 18 22 22 C 1.38218 * 120.02551 * 0.25119 * 21 20 19 23 23 C 1.38438 * 119.97347 * 359.47223 * 22 21 20 24 24 F 1.35101 * 120.02816 * 180.25588 * 23 22 21 25 25 C 1.38176 * 119.98335 * 270.01575 * 19 18 14 26 26 H 1.09000 * 109.47102 * 54.09065 * 1 2 3 27 27 H 1.08999 * 109.47329 * 174.09358 * 1 2 3 28 28 H 1.09007 * 109.47033 * 294.09599 * 1 2 3 29 29 H 1.09000 * 109.46749 * 239.99823 * 2 1 3 30 30 H 1.09001 * 109.47238 * 119.99668 * 2 1 3 31 31 H 0.97000 * 119.99831 * 180.02562 * 8 7 5 32 32 H 1.00911 * 110.99390 * 332.24828 * 13 3 2 33 33 H 1.08994 * 109.46782 * 55.00447 * 16 14 13 34 34 H 1.09001 * 109.46861 * 174.99630 * 16 14 13 35 35 H 0.96703 * 114.00065 * 179.97438 * 17 16 14 36 36 H 1.08997 * 109.47009 * 174.99299 * 18 14 13 37 37 H 1.08998 * 109.46940 * 54.99748 * 18 14 13 38 38 H 1.07997 * 119.97392 * 359.97438 * 20 19 18 39 39 H 1.07997 * 119.98447 * 179.97438 * 21 20 19 40 40 H 1.07999 * 120.01062 * 179.72172 * 22 21 20 41 41 H 1.08001 * 120.01390 * 359.97438 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5954 1.9851 -0.8343 5 6 3.5403 1.4448 -0.1418 6 1 4.1549 1.8861 0.6290 7 6 4.1285 0.8835 -1.2554 8 7 3.3801 0.3465 -2.1941 9 14 5.9882 0.8858 -1.4307 10 1 6.5962 1.5451 -0.2470 11 1 6.4784 -0.5128 -1.5239 12 1 6.3685 1.6266 -2.6603 13 7 1.6665 2.0940 1.2624 14 6 1.5093 3.5432 1.0806 15 1 1.1158 3.7438 0.0841 16 6 2.8685 4.2274 1.2396 17 8 3.3307 4.0627 2.5816 18 6 0.5388 4.0868 2.1311 19 6 -0.8315 3.5048 1.8979 20 6 -1.1931 2.3202 2.5124 21 6 -2.4495 1.7849 2.2989 22 6 -3.3441 2.4309 1.4666 23 6 -2.9853 3.6200 0.8552 24 9 -3.8608 4.2549 0.0455 25 6 -1.7262 4.1551 1.0696 26 1 -0.3633 0.6027 -0.8324 27 1 -0.3634 -1.0222 -0.1057 28 1 -0.3633 0.4196 0.9382 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.7940 -0.0487 -2.9773 32 1 0.8277 1.6847 1.6462 33 1 3.5841 3.7781 0.5511 34 1 2.7686 5.2899 1.0175 35 1 4.1895 4.4721 2.7549 36 1 0.4904 5.1729 2.0535 37 1 0.8870 3.8088 3.1259 38 1 -0.4930 1.8122 3.1591 39 1 -2.7306 0.8593 2.7792 40 1 -4.3241 2.0101 1.2964 41 1 -1.4436 5.0806 0.5898 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255157361.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:00 Heat of formation + Delta-G solvation = -79.999480 kcal Electronic energy + Delta-G solvation = -22907.115344 eV Core-core repulsion = 19507.944703 eV Total energy + Delta-G solvation = -3399.170641 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.83255 -39.39409 -37.26408 -35.39298 -33.70195 -31.84905 -30.84385 -30.40743 -28.27376 -26.20257 -25.68126 -22.83335 -22.62506 -21.64147 -19.78487 -19.50096 -17.29238 -16.70258 -16.34808 -16.20493 -16.12614 -15.55570 -14.88715 -14.76758 -14.27410 -13.83111 -13.69146 -13.31826 -13.14484 -12.96220 -12.64826 -12.34809 -12.11215 -11.94118 -11.73375 -11.52680 -11.13251 -11.11012 -10.92443 -10.80017 -10.62013 -10.29181 -9.87824 -9.61672 -9.59752 -9.25777 -8.99018 -8.80360 -8.51759 -8.31549 -7.15535 -5.94770 -3.97982 1.23355 1.27573 3.30409 3.39057 3.42999 3.65088 4.28846 4.44992 4.74662 4.84793 4.94484 5.08837 5.18540 5.30817 5.35264 5.43396 5.59375 5.70598 5.77735 6.00048 6.06187 6.14157 6.17592 6.20112 6.20888 6.33445 6.37664 6.45014 6.53470 6.68605 6.71726 6.88837 6.98021 7.10150 7.22351 7.52317 7.80954 7.96667 8.24932 8.39322 8.45081 8.81348 9.11026 9.66368 11.10435 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.019182 B = 0.005409 C = 0.004771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.381997 B = 5175.546146 C = 5867.190130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C 0.217 3.783 4 H 0.001 0.999 5 C -0.487 4.487 6 H 0.066 0.934 7 C 0.053 3.947 8 N -0.896 5.896 9 Si 0.891 3.109 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.287 1.287 13 N -0.673 5.673 14 C 0.106 3.894 15 H 0.047 0.953 16 C 0.084 3.916 17 O -0.559 6.559 18 C -0.084 4.084 19 C -0.046 4.046 20 C -0.125 4.125 21 C -0.086 4.086 22 C -0.163 4.163 23 C 0.097 3.903 24 F -0.144 7.144 25 C -0.153 4.153 26 H 0.040 0.960 27 H 0.035 0.965 28 H 0.037 0.963 29 H 0.099 0.901 30 H 0.040 0.960 31 H 0.258 0.742 32 H 0.321 0.679 33 H 0.075 0.925 34 H 0.024 0.976 35 H 0.363 0.637 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.134 0.866 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.317 6.233 7.815 13.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C 0.110 3.890 4 H 0.018 0.982 5 C -0.526 4.526 6 H 0.084 0.916 7 C -0.148 4.148 8 N -0.536 5.536 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.214 1.214 13 N -0.307 5.307 14 C -0.005 4.005 15 H 0.065 0.935 16 C 0.005 3.995 17 O -0.362 6.362 18 C -0.122 4.122 19 C -0.046 4.046 20 C -0.143 4.143 21 C -0.104 4.104 22 C -0.182 4.182 23 C 0.077 3.923 24 F -0.123 7.123 25 C -0.172 4.172 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.117 0.883 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.141 0.859 33 H 0.093 0.907 34 H 0.042 0.958 35 H 0.208 0.792 36 H 0.090 0.910 37 H 0.110 0.890 38 H 0.152 0.848 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.262 5.884 7.876 13.507 hybrid contribution 0.460 0.343 -1.120 1.259 sum -8.802 6.227 6.756 12.723 Atomic orbital electron populations 1.21914 0.99576 0.99556 0.99742 1.21783 0.91229 1.00544 1.02966 1.19262 0.95519 0.89994 0.84229 0.98180 1.21337 0.91347 1.36004 1.03918 0.91558 1.24992 0.97866 0.95838 0.96061 1.69889 1.34463 1.39703 1.09577 0.86547 0.86109 0.77645 0.77710 1.19820 1.21195 1.21380 1.60785 1.38429 1.00323 1.31201 1.21417 0.92308 0.91224 0.95568 0.93546 1.22377 0.96917 0.95799 0.84368 1.86513 1.39381 1.80804 1.29506 1.20856 0.89636 0.99661 1.02031 1.19929 0.95746 0.94422 0.94519 1.21236 0.96521 0.95717 1.00836 1.20995 0.93177 0.99330 0.96921 1.21069 1.01520 0.95274 1.00341 1.17691 0.88183 0.93009 0.93379 1.91477 1.68354 1.81545 1.70939 1.21035 0.92497 1.02146 1.01538 0.94115 0.94538 0.94365 0.88314 0.94162 0.93231 0.85898 0.90712 0.95812 0.79243 0.91018 0.89041 0.84814 0.85092 0.85161 0.85031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 9.65 37.16 0.36 -2.61 16 2 C -0.13 -2.99 5.34 -26.73 -0.14 -3.13 16 3 C 0.22 5.31 2.03 -68.87 -0.14 5.17 16 4 H 0.00 0.02 7.35 -51.93 -0.38 -0.36 16 5 C -0.49 -13.01 7.36 -34.44 -0.25 -13.27 16 6 H 0.07 1.81 6.80 -52.48 -0.36 1.45 16 7 C 0.05 1.43 5.29 -17.82 -0.09 1.33 16 8 N -0.90 -25.27 11.29 55.43 0.63 -24.64 16 9 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 10 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 N -0.67 -13.99 6.11 -100.96 -0.62 -14.61 16 14 C 0.11 1.93 2.43 -67.71 -0.16 1.76 16 15 H 0.05 0.91 7.37 -51.93 -0.38 0.53 16 16 C 0.08 1.48 6.58 37.16 0.24 1.72 16 17 O -0.56 -9.43 12.83 -35.23 -0.45 -9.88 16 18 C -0.08 -1.25 4.69 -27.88 -0.13 -1.38 16 19 C -0.05 -0.66 4.85 -104.64 -0.51 -1.16 16 20 C -0.12 -1.68 6.93 -39.58 -0.27 -1.95 16 21 C -0.09 -1.04 9.91 -39.59 -0.39 -1.43 16 22 C -0.16 -2.03 10.03 -39.52 -0.40 -2.43 16 23 C 0.10 1.35 7.30 -39.42 -0.29 1.06 16 24 F -0.14 -2.06 17.27 2.25 0.04 -2.03 16 25 C -0.15 -2.15 9.68 -39.51 -0.38 -2.54 16 26 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.04 0.67 5.36 -51.92 -0.28 0.40 16 29 H 0.10 2.62 5.94 -51.93 -0.31 2.31 16 30 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.32 6.12 3.41 -39.29 -0.13 5.99 16 33 H 0.07 1.54 5.76 -51.93 -0.30 1.24 16 34 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.36 4.55 9.12 45.56 0.42 4.97 16 36 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 37 H 0.09 1.40 7.67 -51.93 -0.40 1.01 16 38 H 0.13 1.74 7.50 -52.49 -0.39 1.35 16 39 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 40 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 41 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 329.83 15.07 4.97 4.97 Total: -1.00 -29.54 329.83 -8.05 -37.59 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -5.03 Total: 11.33 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: -2.56 Total: -18.85 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.01 Total: -39.25 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: -0.45 Total: -9.88 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.04 Total: -2.03 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.54 -8.05 -37.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255157361.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.412 kcal (2) G-P(sol) polarization free energy of solvation -29.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds