Wall clock time and date at job start Tue Mar 31 2020 05:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46862 * 2 1 4 4 H 1.08996 * 109.47384 * 54.45790 * 3 2 1 5 5 C 1.50702 * 109.46679 * 174.45099 * 3 2 1 6 6 H 1.07998 * 119.99958 * 120.00094 * 5 3 2 7 7 C 1.37879 * 119.99935 * 300.00085 * 5 3 2 8 8 N 1.31512 * 120.00050 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00061 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47120 * 89.99721 * 9 7 5 11 11 H 1.48499 * 109.47535 * 209.99897 * 9 7 5 12 12 H 1.48502 * 109.47284 * 329.99952 * 9 7 5 13 13 N 1.46895 * 109.47492 * 294.44571 * 3 2 1 14 14 C 1.46902 * 110.99893 * 151.41886 * 13 3 2 15 15 H 1.09002 * 109.47329 * 323.16164 * 14 13 3 16 16 C 1.52999 * 109.46766 * 83.15787 * 14 13 3 17 17 O 1.42906 * 109.47113 * 64.99924 * 16 14 13 18 18 C 1.53006 * 109.47086 * 203.15839 * 14 13 3 19 19 C 1.50692 * 109.46877 * 65.00396 * 18 14 13 20 20 C 1.38264 * 119.99087 * 90.00085 * 19 18 14 21 21 C 1.38223 * 120.05549 * 179.73844 * 20 19 18 22 22 C 1.38221 * 120.02528 * 0.25953 * 21 20 19 23 23 C 1.38443 * 119.97251 * 359.97438 * 22 21 20 24 24 F 1.35102 * 120.02648 * 179.97438 * 23 22 21 25 25 C 1.38178 * 119.98822 * 270.25046 * 19 18 14 26 26 H 1.09004 * 109.47020 * 176.10556 * 1 2 3 27 27 H 1.09001 * 109.47399 * 296.11118 * 1 2 3 28 28 H 1.09001 * 109.47054 * 56.11258 * 1 2 3 29 29 H 1.09002 * 109.47038 * 239.99932 * 2 1 3 30 30 H 1.08996 * 109.46616 * 119.99967 * 2 1 3 31 31 H 0.97002 * 119.99967 * 179.97438 * 8 7 5 32 32 H 1.00907 * 110.99757 * 27.46883 * 13 3 2 33 33 H 1.09000 * 109.46925 * 184.99844 * 16 14 13 34 34 H 1.08994 * 109.47210 * 304.99987 * 16 14 13 35 35 H 0.96704 * 114.00078 * 179.97438 * 17 16 14 36 36 H 1.09001 * 109.46667 * 305.00194 * 18 14 13 37 37 H 1.08997 * 109.46756 * 185.00295 * 18 14 13 38 38 H 1.08000 * 119.96992 * 0.02562 * 20 19 18 39 39 H 1.07995 * 119.98637 * 180.27561 * 21 20 19 40 40 H 1.07992 * 120.01386 * 179.97438 * 22 21 20 41 41 H 1.08006 * 120.01493 * 359.97438 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5979 1.9842 0.8362 5 6 3.5407 1.4447 0.1374 6 1 4.1530 1.8867 -0.6346 7 6 4.1320 0.8822 1.2487 8 7 3.3864 0.3443 2.1891 9 14 5.9922 0.8855 1.4194 10 1 6.4226 2.1208 2.1225 11 1 6.4199 -0.3030 2.2002 12 1 6.6131 0.8416 0.0711 13 7 1.6628 2.0952 -1.2608 14 6 1.4996 3.5434 -1.0755 15 1 1.0550 3.7370 -0.0993 16 6 2.8668 4.2252 -1.1575 17 8 3.3983 4.0700 -2.4749 18 6 0.5866 4.0980 -2.1709 19 6 -0.7953 3.5178 -2.0144 20 6 -1.7314 4.1644 -1.2286 21 6 -3.0010 3.6363 -1.0884 22 6 -3.3347 2.4581 -1.7294 23 6 -2.3968 1.8072 -2.5126 24 9 -2.7217 0.6552 -3.1392 25 6 -1.1250 2.3371 -2.6520 26 1 -0.3633 -1.0253 -0.0698 27 1 -0.3634 0.4523 0.9228 28 1 -0.3633 0.5730 -0.8531 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8025 -0.0517 2.9708 32 1 0.8257 1.6832 -1.6450 33 1 2.7578 5.2861 -0.9323 34 1 3.5444 3.7684 -0.4362 35 1 4.2656 4.4791 -2.5998 36 1 0.9859 3.8270 -3.1483 37 1 0.5366 5.1835 -2.0871 38 1 -1.4716 5.0853 -0.7277 39 1 -3.7326 4.1447 -0.4779 40 1 -4.3266 2.0455 -1.6194 41 1 -0.3926 1.8302 -3.2628 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255157363.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:02 Heat of formation + Delta-G solvation = -79.125749 kcal Electronic energy + Delta-G solvation = -22996.000928 eV Core-core repulsion = 19596.868174 eV Total energy + Delta-G solvation = -3399.132754 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.77292 -39.38183 -37.28409 -35.37266 -33.68880 -31.79808 -30.91068 -30.39393 -28.24363 -26.21953 -25.66214 -22.87182 -22.54615 -21.68085 -19.77433 -19.45918 -17.22019 -16.77166 -16.31249 -16.17235 -16.11220 -15.54247 -14.89390 -14.73881 -14.23156 -14.03155 -13.54849 -13.24913 -13.07439 -12.91068 -12.65702 -12.39430 -12.16822 -11.93385 -11.66938 -11.48129 -11.28882 -11.09231 -10.82749 -10.77132 -10.66088 -10.28201 -9.85349 -9.61426 -9.58856 -9.24028 -8.98413 -8.78187 -8.53219 -8.30917 -7.14739 -5.94046 -3.97038 1.23023 1.27522 3.31073 3.38998 3.43486 3.64481 4.31385 4.45503 4.75355 4.83969 4.95667 5.08958 5.19523 5.26758 5.34706 5.44744 5.60639 5.72597 5.77140 6.03143 6.03435 6.13757 6.17771 6.21422 6.22741 6.30009 6.41369 6.46157 6.50753 6.70179 6.73670 6.90218 6.98144 7.10266 7.22801 7.53168 7.82125 7.97459 8.26820 8.40392 8.46127 8.81604 9.11768 9.66962 11.11145 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.019180 B = 0.005638 C = 0.004852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.540605 B = 4965.436442 C = 5768.937317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C 0.218 3.782 4 H 0.001 0.999 5 C -0.487 4.487 6 H 0.067 0.933 7 C 0.053 3.947 8 N -0.896 5.896 9 Si 0.892 3.108 10 H -0.284 1.284 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.675 5.675 14 C 0.106 3.894 15 H 0.045 0.955 16 C 0.083 3.917 17 O -0.558 6.558 18 C -0.083 4.083 19 C -0.046 4.046 20 C -0.130 4.130 21 C -0.090 4.090 22 C -0.165 4.165 23 C 0.102 3.898 24 F -0.141 7.141 25 C -0.149 4.149 26 H 0.036 0.964 27 H 0.041 0.959 28 H 0.035 0.965 29 H 0.039 0.961 30 H 0.099 0.901 31 H 0.258 0.742 32 H 0.321 0.679 33 H 0.023 0.977 34 H 0.077 0.923 35 H 0.363 0.637 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.127 0.873 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.847 8.133 -6.436 14.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C 0.111 3.889 4 H 0.018 0.982 5 C -0.526 4.526 6 H 0.085 0.915 7 C -0.147 4.147 8 N -0.537 5.537 9 Si 0.720 3.280 10 H -0.210 1.210 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.309 5.309 14 C -0.005 4.005 15 H 0.063 0.937 16 C 0.004 3.996 17 O -0.361 6.361 18 C -0.121 4.121 19 C -0.046 4.046 20 C -0.149 4.149 21 C -0.108 4.108 22 C -0.184 4.184 23 C 0.082 3.918 24 F -0.120 7.120 25 C -0.168 4.168 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.117 0.883 31 H 0.068 0.932 32 H 0.141 0.859 33 H 0.042 0.958 34 H 0.095 0.905 35 H 0.207 0.793 36 H 0.108 0.892 37 H 0.091 0.909 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -9.767 7.707 -6.590 14.079 hybrid contribution 0.548 -0.024 0.824 0.990 sum -9.220 7.683 -5.766 13.315 Atomic orbital electron populations 1.21909 0.99653 0.99454 0.99783 1.21787 0.91148 1.00583 1.02989 1.19225 0.95492 0.89980 0.84232 0.98166 1.21303 0.91312 1.36003 1.04001 0.91535 1.24992 0.97868 0.95810 0.96073 1.69878 1.34581 1.39605 1.09596 0.86601 0.86110 0.77290 0.77997 1.21027 1.21446 1.19895 1.60789 1.38474 1.00317 1.31301 1.21404 0.92601 0.91210 0.95267 0.93714 1.22388 0.96109 0.95804 0.85252 1.86524 1.37401 1.81068 1.31146 1.20839 0.89685 0.99555 1.02009 1.19937 0.96335 0.93647 0.94682 1.21127 0.93280 1.00932 0.99512 1.20943 0.96641 0.94932 0.98319 1.21071 0.99779 0.97439 1.00086 1.17704 0.94339 0.83734 0.95975 1.91493 1.93114 1.46896 1.80497 1.21163 0.95250 0.97336 1.03074 0.94520 0.94013 0.94606 0.94180 0.88255 0.93180 0.85894 0.95846 0.90521 0.79263 0.89167 0.90865 0.85531 0.85307 0.85166 0.84266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 9.81 37.16 0.36 -2.74 16 2 C -0.13 -3.06 5.33 -26.73 -0.14 -3.20 16 3 C 0.22 5.38 2.02 -68.87 -0.14 5.24 16 4 H 0.00 0.02 7.38 -51.93 -0.38 -0.36 16 5 C -0.49 -13.09 7.17 -34.44 -0.25 -13.34 16 6 H 0.07 1.82 6.87 -52.49 -0.36 1.46 16 7 C 0.05 1.44 5.29 -17.82 -0.09 1.34 16 8 N -0.90 -25.32 11.29 55.43 0.63 -24.70 16 9 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 13 N -0.67 -14.32 6.11 -100.95 -0.62 -14.94 16 14 C 0.11 1.94 2.42 -67.71 -0.16 1.77 16 15 H 0.05 0.86 7.44 -51.93 -0.39 0.48 16 16 C 0.08 1.46 6.48 37.16 0.24 1.71 16 17 O -0.56 -9.57 12.83 -35.23 -0.45 -10.02 16 18 C -0.08 -1.24 4.70 -27.88 -0.13 -1.37 16 19 C -0.05 -0.65 4.83 -104.64 -0.51 -1.16 16 20 C -0.13 -1.64 9.70 -39.58 -0.38 -2.02 16 21 C -0.09 -1.04 10.04 -39.59 -0.40 -1.43 16 22 C -0.16 -2.05 10.03 -39.51 -0.40 -2.44 16 23 C 0.10 1.47 7.30 -39.42 -0.29 1.18 16 24 F -0.14 -2.13 17.27 2.25 0.04 -2.09 16 25 C -0.15 -2.23 6.99 -39.51 -0.28 -2.50 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.04 0.69 5.33 -51.93 -0.28 0.41 16 29 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.10 2.67 5.94 -51.93 -0.31 2.36 16 31 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.32 6.40 3.35 -39.29 -0.13 6.27 16 33 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 1.59 5.70 -51.93 -0.30 1.29 16 35 H 0.36 4.64 9.12 45.56 0.42 5.05 16 36 H 0.09 1.43 7.67 -51.93 -0.40 1.03 16 37 H 0.07 0.94 8.09 -51.93 -0.42 0.52 16 38 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 39 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 40 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 41 H 0.14 2.11 7.55 -52.48 -0.40 1.72 16 LS Contribution 329.97 15.07 4.97 4.97 Total: -1.00 -29.73 329.97 -8.05 -37.78 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -5.04 Total: 11.77 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: -2.56 Total: -18.96 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.01 Total: -39.63 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: -0.45 Total: -10.02 kcal Atomic # 9 Polarization: -2.13 SS G_CDS: 0.04 Total: -2.09 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.73 -8.05 -37.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255157363.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.346 kcal (2) G-P(sol) polarization free energy of solvation -29.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds