Wall clock time and date at job start Tue Mar 31 2020 05:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47318 * 2 1 4 4 H 1.09003 * 109.46574 * 305.41265 * 3 2 1 5 5 C 1.50699 * 109.46963 * 185.41623 * 3 2 1 6 6 H 1.08003 * 119.99772 * 239.99394 * 5 3 2 7 7 C 1.37874 * 120.00330 * 60.00206 * 5 3 2 8 8 N 1.31523 * 119.99833 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00341 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46918 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46756 * 119.99774 * 9 7 5 12 12 H 1.48500 * 109.47224 * 239.99570 * 9 7 5 13 13 N 1.46897 * 109.47059 * 65.41379 * 3 2 1 14 14 C 1.46903 * 110.99738 * 204.05160 * 13 3 2 15 15 H 1.08992 * 109.47342 * 327.68883 * 14 13 3 16 16 C 1.53000 * 109.46534 * 87.68776 * 14 13 3 17 17 O 1.42904 * 109.47325 * 64.75526 * 16 14 13 18 18 C 1.52995 * 109.47161 * 207.68304 * 14 13 3 19 19 C 1.50702 * 109.46867 * 65.00744 * 18 14 13 20 20 C 1.38256 * 119.99030 * 89.99866 * 19 18 14 21 21 C 1.38224 * 120.05361 * 180.02562 * 20 19 18 22 22 C 1.38220 * 120.02602 * 359.97438 * 21 20 19 23 23 C 1.38433 * 119.97270 * 0.02562 * 22 21 20 24 24 F 1.35107 * 120.02587 * 180.02562 * 23 22 21 25 25 C 1.38180 * 119.98526 * 269.72399 * 19 18 14 26 26 H 1.08999 * 109.47247 * 55.77058 * 1 2 3 27 27 H 1.08995 * 109.47374 * 175.76692 * 1 2 3 28 28 H 1.08998 * 109.47014 * 295.76962 * 1 2 3 29 29 H 1.08997 * 109.47415 * 239.99802 * 2 1 3 30 30 H 1.09000 * 109.47239 * 119.99860 * 2 1 3 31 31 H 0.97001 * 119.99470 * 180.02562 * 8 7 5 32 32 H 1.00897 * 111.00235 * 328.00738 * 13 3 2 33 33 H 1.09007 * 109.47153 * 184.74932 * 16 14 13 34 34 H 1.09000 * 109.47712 * 304.75252 * 16 14 13 35 35 H 0.96700 * 114.00219 * 179.97438 * 17 16 14 36 36 H 1.08997 * 109.47303 * 185.00255 * 18 14 13 37 37 H 1.09001 * 109.47388 * 305.00649 * 18 14 13 38 38 H 1.07999 * 119.97748 * 359.97438 * 20 19 18 39 39 H 1.08006 * 119.98778 * 180.02562 * 21 20 19 40 40 H 1.08000 * 120.01127 * 179.97438 * 22 21 20 41 41 H 1.08004 * 120.01332 * 0.02562 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5996 1.9835 -0.8376 5 6 3.5410 1.4445 -0.1341 6 1 4.1516 1.8873 0.6389 7 6 4.1348 0.8813 -1.2437 8 7 3.3912 0.3418 -2.1849 9 14 5.9954 0.8845 -1.4103 10 1 6.5973 1.5465 -0.2251 11 1 6.4868 -0.5142 -1.4982 12 1 6.3811 1.6228 -2.6396 13 7 1.6599 2.0962 1.2594 14 6 1.6019 3.5553 1.0985 15 1 2.3447 3.8698 0.3655 16 6 0.2072 3.9601 0.6172 17 8 -0.7546 3.6476 1.6269 18 6 1.8934 4.2284 2.4412 19 6 3.3110 3.9292 2.8558 20 6 4.3361 4.7739 2.4722 21 6 5.6369 4.5004 2.8514 22 6 5.9142 3.3822 3.6150 23 6 4.8886 2.5357 3.9996 24 9 5.1584 1.4426 4.7465 25 6 3.5851 2.8138 3.6240 26 1 -0.3634 0.5781 -0.8496 27 1 -0.3634 -1.0248 -0.0759 28 1 -0.3633 0.4468 0.9254 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8091 -0.0547 -2.9653 32 1 0.7830 1.7353 1.6039 33 1 0.1886 5.0315 0.4171 34 1 -0.0345 3.4157 -0.2956 35 1 -1.6632 3.8781 1.3896 36 1 1.7634 5.3061 2.3431 37 1 1.2058 3.8466 3.1959 38 1 4.1206 5.6476 1.8752 39 1 6.4369 5.1612 2.5515 40 1 6.9307 3.1685 3.9107 41 1 2.7836 2.1562 3.9269 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255157364.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:04 Heat of formation + Delta-G solvation = -83.157694 kcal Electronic energy + Delta-G solvation = -23058.293083 eV Core-core repulsion = 19658.985491 eV Total energy + Delta-G solvation = -3399.307592 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.39145 -38.92947 -37.51656 -35.53634 -33.55301 -31.81728 -30.70201 -30.02944 -28.24754 -26.01215 -25.64393 -22.81877 -22.23461 -21.45658 -19.85926 -19.54225 -17.25972 -16.74460 -16.16174 -15.85796 -15.70287 -15.09022 -14.93921 -14.63637 -14.37515 -13.85544 -13.56971 -13.36546 -12.98221 -12.74196 -12.60548 -12.31598 -11.95750 -11.77933 -11.54297 -11.30852 -11.12362 -10.98652 -10.80176 -10.65945 -10.50917 -10.34438 -9.91627 -9.82350 -9.66617 -9.51867 -8.98841 -8.35705 -8.31286 -8.15381 -7.13692 -5.92797 -3.95582 1.66326 1.75905 3.33057 3.41645 3.48660 4.07370 4.47154 4.54226 4.74013 5.10100 5.15392 5.30975 5.38862 5.43295 5.52189 5.59937 5.66600 5.79542 5.89910 5.96985 6.18273 6.19932 6.22199 6.24052 6.42269 6.47435 6.51738 6.63016 6.66321 6.75504 6.89326 7.07040 7.11334 7.23692 7.41098 7.54786 7.78804 7.83737 7.99702 8.36693 8.45446 8.85184 9.14567 9.69794 11.12511 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.010481 B = 0.008962 C = 0.006011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2670.914467 B = 3123.588992 C = 4656.975372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C 0.221 3.779 4 H -0.002 1.002 5 C -0.484 4.484 6 H 0.063 0.937 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.287 1.287 13 N -0.674 5.674 14 C 0.102 3.898 15 H 0.093 0.907 16 C 0.045 3.955 17 O -0.568 6.568 18 C -0.064 4.064 19 C -0.023 4.023 20 C -0.132 4.132 21 C -0.096 4.096 22 C -0.167 4.167 23 C 0.094 3.906 24 F -0.147 7.147 25 C -0.113 4.113 26 H 0.039 0.961 27 H 0.035 0.965 28 H 0.038 0.962 29 H 0.098 0.902 30 H 0.040 0.960 31 H 0.257 0.743 32 H 0.327 0.673 33 H 0.039 0.961 34 H 0.047 0.953 35 H 0.370 0.630 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.120 0.880 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.616 8.847 7.820 12.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C 0.113 3.887 4 H 0.015 0.985 5 C -0.523 4.523 6 H 0.081 0.919 7 C -0.145 4.145 8 N -0.539 5.539 9 Si 0.715 3.285 10 H -0.196 1.196 11 H -0.213 1.213 12 H -0.214 1.214 13 N -0.306 5.306 14 C -0.009 4.009 15 H 0.111 0.889 16 C -0.034 4.034 17 O -0.372 6.372 18 C -0.102 4.102 19 C -0.024 4.024 20 C -0.151 4.151 21 C -0.114 4.114 22 C -0.186 4.186 23 C 0.075 3.925 24 F -0.126 7.126 25 C -0.131 4.131 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.116 0.884 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.146 0.854 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.216 0.784 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.138 0.862 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.385 8.489 8.233 12.064 hybrid contribution -0.163 -0.094 -1.168 1.183 sum -2.548 8.395 7.065 11.264 Atomic orbital electron populations 1.21864 0.99657 0.99460 0.99596 1.21747 0.91165 1.00502 1.02950 1.19150 0.95285 0.89877 0.84364 0.98457 1.21271 0.91260 1.35784 1.03994 0.91889 1.24926 0.97728 0.95827 0.95998 1.69888 1.34421 1.39855 1.09690 0.86601 0.86431 0.77621 0.77834 1.19604 1.21254 1.21367 1.60664 1.35794 1.01140 1.32985 1.21558 0.92287 0.91283 0.95780 0.88867 1.23065 0.91410 0.98244 0.90678 1.86476 1.19269 1.87220 1.44235 1.20554 0.92115 0.99068 0.98456 1.19527 0.95755 0.93099 0.93977 1.21000 0.92572 1.00420 1.01065 1.20804 0.96710 0.96576 0.97344 1.20956 0.98423 0.96552 1.02672 1.17715 0.94357 0.85030 0.95431 1.91454 1.94705 1.52181 1.74273 1.20909 0.94787 0.97987 0.99459 0.94221 0.94630 0.94288 0.88419 0.94148 0.93316 0.85447 0.94308 0.93499 0.78400 0.91821 0.90478 0.86175 0.85941 0.85820 0.84886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.66 37.15 0.36 -2.52 16 2 C -0.13 -2.94 5.37 -26.73 -0.14 -3.08 16 3 C 0.22 5.28 1.84 -68.87 -0.13 5.15 16 4 H 0.00 -0.06 7.30 -51.93 -0.38 -0.44 16 5 C -0.48 -13.06 8.46 -34.44 -0.29 -13.35 16 6 H 0.06 1.77 7.81 -52.48 -0.41 1.36 16 7 C 0.06 1.52 5.29 -17.82 -0.09 1.42 16 8 N -0.90 -25.43 11.29 55.43 0.63 -24.81 16 9 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 10 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 N -0.67 -13.56 5.44 -100.96 -0.55 -14.11 16 14 C 0.10 1.78 2.19 -67.71 -0.15 1.63 16 15 H 0.09 1.84 7.58 -51.93 -0.39 1.44 16 16 C 0.05 0.67 6.70 37.16 0.25 0.92 16 17 O -0.57 -7.61 12.24 -35.23 -0.43 -8.04 16 18 C -0.06 -0.97 4.75 -27.88 -0.13 -1.10 16 19 C -0.02 -0.39 4.95 -104.64 -0.52 -0.90 16 20 C -0.13 -2.04 9.70 -39.58 -0.38 -2.42 16 21 C -0.10 -1.45 10.04 -39.59 -0.40 -1.85 16 22 C -0.17 -2.71 10.03 -39.52 -0.40 -3.11 16 23 C 0.09 1.68 7.30 -39.42 -0.29 1.39 16 24 F -0.15 -2.70 17.27 2.25 0.04 -2.66 16 25 C -0.11 -2.00 9.30 -39.51 -0.37 -2.37 16 26 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.04 0.70 6.59 -51.93 -0.34 0.35 16 29 H 0.10 2.60 5.94 -51.93 -0.31 2.29 16 30 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.33 6.37 5.72 -39.29 -0.22 6.14 16 33 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.76 7.58 -51.93 -0.39 0.36 16 35 H 0.37 3.29 9.12 45.56 0.42 3.71 16 36 H 0.06 0.83 8.08 -51.93 -0.42 0.41 16 37 H 0.08 1.19 7.68 -51.93 -0.40 0.79 16 38 H 0.12 1.58 8.06 -52.49 -0.42 1.15 16 39 H 0.12 1.50 8.06 -52.48 -0.42 1.07 16 40 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 41 H 0.13 2.35 8.06 -52.48 -0.42 1.92 16 LS Contribution 339.19 15.07 5.11 5.11 Total: -1.00 -29.47 339.19 -8.28 -37.75 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -5.37 Total: 10.17 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: -2.68 Total: -20.19 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.08 Total: -38.92 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: -0.43 Total: -8.04 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.04 Total: -2.66 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.47 -8.28 -37.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255157364.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.408 kcal (2) G-P(sol) polarization free energy of solvation -29.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds