Wall clock time and date at job start Tue Mar 31 2020 05:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47166 * 2 1 4 4 H 1.09000 * 109.47004 * 54.78026 * 3 2 1 5 5 C 1.50693 * 109.47135 * 174.78104 * 3 2 1 6 6 H 1.08009 * 120.00033 * 119.99866 * 5 3 2 7 7 C 1.37874 * 120.00188 * 299.99891 * 5 3 2 8 8 N 1.31523 * 120.00036 * 179.97438 * 7 5 3 9 9 Si 1.86796 * 120.00085 * 0.02562 * 7 5 3 10 10 H 1.48502 * 109.47379 * 89.99704 * 9 7 5 11 11 H 1.48496 * 109.47276 * 210.00198 * 9 7 5 12 12 H 1.48505 * 109.46820 * 329.99699 * 9 7 5 13 13 N 1.46903 * 109.47017 * 294.78138 * 3 2 1 14 14 C 1.46899 * 110.99970 * 154.13671 * 13 3 2 15 15 C 1.53002 * 109.47160 * 185.50164 * 14 13 3 16 16 C 1.52999 * 109.47022 * 180.02562 * 15 14 13 17 17 O 1.42902 * 109.47081 * 179.97438 * 16 15 14 18 18 C 1.35897 * 116.99707 * 180.02562 * 17 16 15 19 19 C 1.38770 * 120.04663 * 359.72289 * 18 17 16 20 20 C 1.38129 * 119.99319 * 179.74971 * 19 18 17 21 21 C 1.38257 * 120.07875 * 0.52537 * 20 19 18 22 22 C 1.38470 * 120.08784 * 359.75213 * 21 20 19 23 23 F 1.35099 * 120.00030 * 179.97438 * 22 21 20 24 24 C 1.38384 * 120.00209 * 359.97098 * 22 21 20 25 25 H 1.08996 * 109.47182 * 57.23197 * 1 2 3 26 26 H 1.09002 * 109.47103 * 177.23346 * 1 2 3 27 27 H 1.09002 * 109.46949 * 297.22533 * 1 2 3 28 28 H 1.08994 * 109.47046 * 239.99774 * 2 1 3 29 29 H 1.09006 * 109.47122 * 120.00224 * 2 1 3 30 30 H 0.96999 * 119.99288 * 180.02562 * 8 7 5 31 31 H 1.00896 * 110.99954 * 278.09556 * 13 3 2 32 32 H 1.08998 * 109.47257 * 305.50155 * 14 13 3 33 33 H 1.08998 * 109.47077 * 65.49548 * 14 13 3 34 34 H 1.08998 * 109.46839 * 299.99612 * 15 14 13 35 35 H 1.08999 * 109.47146 * 59.99928 * 15 14 13 36 36 H 1.08998 * 109.47201 * 299.99873 * 16 15 14 37 37 H 1.08999 * 109.47343 * 59.99896 * 16 15 14 38 38 H 1.07993 * 120.00077 * 0.02562 * 19 18 17 39 39 H 1.07995 * 119.96231 * 180.27593 * 20 19 18 40 40 H 1.08008 * 119.95229 * 179.76744 * 21 20 19 41 41 H 1.08005 * 120.03742 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6024 1.9826 0.8396 5 6 3.5414 1.4444 0.1292 6 1 4.1495 1.8880 -0.6453 7 6 4.1388 0.8800 1.2362 8 7 5.4492 0.8812 1.3487 9 14 3.0872 0.1121 2.5755 10 1 2.8674 -1.3244 2.2699 11 1 3.7797 0.2397 3.8829 12 1 1.7782 0.8107 2.6385 13 7 1.6559 2.0976 -1.2575 14 6 1.5566 3.5529 -1.0839 15 6 1.0237 4.1849 -2.3714 16 6 0.9209 5.7007 -2.1908 17 8 0.4238 6.2911 -3.3935 18 6 0.2723 7.6416 -3.4009 19 6 0.5901 8.3827 -2.2715 20 6 0.4406 9.7558 -2.2821 21 6 -0.0358 10.3923 -3.4132 22 6 -0.3594 9.6555 -4.5400 23 9 -0.8252 10.2792 -5.6442 24 6 -0.2055 8.2802 -4.5353 25 1 -0.3633 0.5562 -0.8641 26 1 -0.3633 -1.0265 -0.0496 27 1 -0.3633 0.4702 0.9138 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 5.8694 0.4838 2.1274 31 1 2.3005 1.8649 -1.9980 32 1 0.8765 3.7752 -0.2616 33 1 2.5425 3.9603 -0.8601 34 1 1.7039 3.9627 -3.1936 35 1 0.0378 3.7776 -2.5951 36 1 0.2410 5.9234 -1.3684 37 1 1.9070 6.1078 -1.9673 38 1 0.9585 7.8863 -1.3860 39 1 0.6923 10.3325 -1.4044 40 1 -0.1555 11.4657 -3.4179 41 1 -0.4573 7.7050 -5.4140 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255158132.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:47 Heat of formation + Delta-G solvation = -68.401147 kcal Electronic energy + Delta-G solvation = -20987.996780 eV Core-core repulsion = 17589.329080 eV Total energy + Delta-G solvation = -3398.667700 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.17932 -40.29466 -37.65265 -36.68716 -33.82180 -32.02701 -31.29708 -30.46205 -29.66919 -27.07799 -24.77086 -23.23156 -22.61895 -22.02806 -21.00837 -19.83628 -18.73557 -17.09166 -16.81747 -16.45305 -16.39890 -16.15904 -15.78264 -15.24960 -14.80214 -14.30304 -14.04061 -13.88025 -13.62644 -13.18624 -12.91415 -12.70566 -12.45039 -12.19976 -12.08089 -11.76495 -11.63354 -11.46845 -11.29338 -10.97228 -10.92468 -10.74688 -10.42825 -10.28769 -9.81360 -9.49338 -9.26630 -9.17221 -8.63159 -8.54734 -7.45159 -6.18256 -4.19787 0.84516 1.01934 2.85527 3.22031 3.31538 3.32394 3.34540 4.07250 4.32007 4.45468 4.70009 4.72114 4.87846 4.92838 4.98003 5.09457 5.14777 5.26408 5.43243 5.61417 5.66096 5.78755 5.82609 5.93374 5.99749 6.02896 6.03753 6.08091 6.23574 6.34349 6.43741 6.52452 6.65744 6.69926 6.93470 7.04828 7.16153 7.22624 7.50035 7.95083 8.30401 8.42004 8.83587 9.45008 10.94606 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.030408 B = 0.002696 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.578059 B =10384.683790 C =10807.104742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.116 4.116 3 C 0.184 3.816 4 H 0.032 0.968 5 C -0.548 4.548 6 H 0.072 0.928 7 C 0.073 3.927 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.298 1.298 12 H -0.265 1.265 13 N -0.681 5.681 14 C 0.069 3.931 15 C -0.114 4.114 16 C 0.060 3.940 17 O -0.309 6.309 18 C 0.167 3.833 19 C -0.220 4.220 20 C -0.050 4.050 21 C -0.198 4.198 22 C 0.136 3.864 23 F -0.136 7.136 24 C -0.195 4.195 25 H 0.063 0.937 26 H 0.033 0.967 27 H 0.038 0.962 28 H 0.058 0.942 29 H 0.045 0.955 30 H 0.264 0.736 31 H 0.336 0.664 32 H 0.063 0.937 33 H 0.036 0.964 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.135 0.865 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.550 15.138 -7.406 20.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.154 4.154 3 C 0.075 3.925 4 H 0.050 0.950 5 C -0.587 4.587 6 H 0.090 0.910 7 C -0.130 4.130 8 N -0.535 5.535 9 Si 0.721 3.279 10 H -0.204 1.204 11 H -0.226 1.226 12 H -0.189 1.189 13 N -0.310 5.310 14 C -0.061 4.061 15 C -0.152 4.152 16 C -0.015 4.015 17 O -0.222 6.222 18 C 0.120 3.880 19 C -0.239 4.239 20 C -0.068 4.068 21 C -0.217 4.217 22 C 0.117 3.883 23 F -0.115 7.115 24 C -0.214 4.214 25 H 0.082 0.918 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.153 0.847 32 H 0.081 0.919 33 H 0.054 0.946 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.155 0.845 39 H 0.153 0.847 40 H 0.153 0.847 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -12.129 14.843 -7.381 20.541 hybrid contribution 0.652 -0.085 0.904 1.118 sum -11.477 14.758 -6.477 19.786 Atomic orbital electron populations 1.21744 0.97555 0.99503 1.01357 1.21818 0.93860 0.99292 1.00440 1.19568 0.94323 0.90698 0.87921 0.95031 1.21738 0.90523 1.39322 1.07117 0.90961 1.25017 0.94793 0.95243 0.97977 1.69920 1.08991 1.44932 1.29642 0.86803 0.80576 0.79936 0.80619 1.20393 1.22597 1.18943 1.60696 1.54989 1.05983 1.09320 1.21632 0.99360 0.90170 0.94978 1.21537 1.03365 0.90415 0.99903 1.22966 0.98785 0.94911 0.84887 1.86088 1.79919 1.16845 1.39355 1.18665 0.92997 0.83275 0.93053 1.21438 1.08207 0.95215 0.99032 1.20807 0.94910 0.93701 0.97364 1.21029 1.06700 1.00836 0.93154 1.17283 0.97651 0.89939 0.83426 1.91510 1.86029 1.82520 1.51433 1.20270 1.08691 0.92761 0.99689 0.91776 0.94777 0.94320 0.92355 0.93722 0.92579 0.84738 0.91864 0.94585 0.91068 0.90372 0.91642 0.91572 0.84463 0.84656 0.84729 0.83935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.83 37.16 0.37 -2.22 16 2 C -0.12 -2.47 5.11 -26.73 -0.14 -2.61 16 3 C 0.18 4.13 1.56 -68.87 -0.11 4.02 16 4 H 0.03 0.74 6.76 -51.93 -0.35 0.39 16 5 C -0.55 -14.69 9.05 -34.44 -0.31 -15.01 16 6 H 0.07 2.10 7.97 -52.48 -0.42 1.68 16 7 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 8 N -0.90 -26.84 13.96 55.43 0.77 -26.07 16 9 Si 0.89 21.56 24.41 -169.99 -4.15 17.41 16 10 H -0.28 -6.58 6.83 56.52 0.39 -6.19 16 11 H -0.30 -7.26 7.11 56.52 0.40 -6.86 16 12 H -0.26 -6.13 6.53 56.52 0.37 -5.76 16 13 N -0.68 -12.88 5.63 -107.96 -0.61 -13.49 16 14 C 0.07 1.12 5.51 -3.82 -0.02 1.10 16 15 C -0.11 -1.51 5.89 -26.73 -0.16 -1.67 16 16 C 0.06 0.69 4.74 37.16 0.18 0.87 16 17 O -0.31 -3.88 10.14 -19.42 -0.20 -4.08 16 18 C 0.17 1.92 6.68 -39.22 -0.26 1.65 16 19 C -0.22 -2.17 9.04 -39.42 -0.36 -2.53 16 20 C -0.05 -0.42 10.04 -39.61 -0.40 -0.82 16 21 C -0.20 -1.76 10.02 -39.49 -0.40 -2.16 16 22 C 0.14 1.42 7.30 -39.44 -0.29 1.13 16 23 F -0.14 -1.47 17.27 2.25 0.04 -1.43 16 24 C -0.19 -2.14 9.97 -39.37 -0.39 -2.53 16 25 H 0.06 1.10 7.68 -51.93 -0.40 0.70 16 26 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 29 H 0.04 1.02 3.21 -51.93 -0.17 0.85 16 30 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.34 6.41 8.46 -39.29 -0.33 6.08 16 32 H 0.06 1.01 7.92 -51.93 -0.41 0.60 16 33 H 0.04 0.64 8.12 -51.93 -0.42 0.22 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 0.68 7.65 -51.93 -0.40 0.28 16 37 H 0.07 0.73 7.67 -51.93 -0.40 0.33 16 38 H 0.14 1.19 6.30 -52.49 -0.33 0.86 16 39 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 41 H 0.14 1.44 8.06 -52.48 -0.42 1.02 16 LS Contribution 337.00 15.07 5.08 5.08 Total: -1.00 -29.25 337.00 -7.64 -36.89 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -6.19 Total: 4.50 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: -2.38 Total: -18.82 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: 0.17 Total: -39.55 kcal Atomic # 8 Polarization: -3.88 SS G_CDS: -0.20 Total: -4.08 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.15 Total: 17.41 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.25 -7.64 -36.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158132.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.511 kcal (2) G-P(sol) polarization free energy of solvation -29.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds