Wall clock time and date at job start Tue Mar 31 2020 05:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47166 * 2 1 4 4 H 1.09000 * 109.47004 * 54.78026 * 3 2 1 5 5 C 1.50693 * 109.47135 * 174.78104 * 3 2 1 6 6 H 1.08009 * 120.00033 * 119.99866 * 5 3 2 7 7 C 1.37874 * 120.00188 * 299.99891 * 5 3 2 8 8 N 1.31523 * 120.00036 * 179.97438 * 7 5 3 9 9 Si 1.86796 * 120.00085 * 0.02562 * 7 5 3 10 10 H 1.48502 * 109.47379 * 89.99704 * 9 7 5 11 11 H 1.48496 * 109.47276 * 210.00198 * 9 7 5 12 12 H 1.48505 * 109.46820 * 329.99699 * 9 7 5 13 13 N 1.46903 * 109.47017 * 294.78138 * 3 2 1 14 14 C 1.46899 * 110.99970 * 154.13671 * 13 3 2 15 15 C 1.53002 * 109.47160 * 185.50164 * 14 13 3 16 16 C 1.52999 * 109.47022 * 180.02562 * 15 14 13 17 17 O 1.42902 * 109.47081 * 179.97438 * 16 15 14 18 18 C 1.35897 * 116.99707 * 180.02562 * 17 16 15 19 19 C 1.38770 * 120.04663 * 359.72289 * 18 17 16 20 20 C 1.38129 * 119.99319 * 179.74971 * 19 18 17 21 21 C 1.38257 * 120.07875 * 0.52537 * 20 19 18 22 22 C 1.38470 * 120.08784 * 359.75213 * 21 20 19 23 23 F 1.35099 * 120.00030 * 179.97438 * 22 21 20 24 24 C 1.38384 * 120.00209 * 359.97098 * 22 21 20 25 25 H 1.08996 * 109.47182 * 57.23197 * 1 2 3 26 26 H 1.09002 * 109.47103 * 177.23346 * 1 2 3 27 27 H 1.09002 * 109.46949 * 297.22533 * 1 2 3 28 28 H 1.08994 * 109.47046 * 239.99774 * 2 1 3 29 29 H 1.09006 * 109.47122 * 120.00224 * 2 1 3 30 30 H 0.96999 * 119.99288 * 180.02562 * 8 7 5 31 31 H 1.00896 * 110.99954 * 278.09556 * 13 3 2 32 32 H 1.08998 * 109.47257 * 305.50155 * 14 13 3 33 33 H 1.08998 * 109.47077 * 65.49548 * 14 13 3 34 34 H 1.08998 * 109.46839 * 299.99612 * 15 14 13 35 35 H 1.08999 * 109.47146 * 59.99928 * 15 14 13 36 36 H 1.08998 * 109.47201 * 299.99873 * 16 15 14 37 37 H 1.08999 * 109.47343 * 59.99896 * 16 15 14 38 38 H 1.07993 * 120.00077 * 0.02562 * 19 18 17 39 39 H 1.07995 * 119.96231 * 180.27593 * 20 19 18 40 40 H 1.08008 * 119.95229 * 179.76744 * 21 20 19 41 41 H 1.08005 * 120.03742 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6024 1.9826 0.8396 5 6 3.5414 1.4444 0.1292 6 1 4.1495 1.8880 -0.6453 7 6 4.1388 0.8800 1.2362 8 7 5.4492 0.8812 1.3487 9 14 3.0872 0.1121 2.5755 10 1 2.8674 -1.3244 2.2699 11 1 3.7797 0.2397 3.8829 12 1 1.7782 0.8107 2.6385 13 7 1.6559 2.0976 -1.2575 14 6 1.5566 3.5529 -1.0839 15 6 1.0237 4.1849 -2.3714 16 6 0.9209 5.7007 -2.1908 17 8 0.4238 6.2911 -3.3935 18 6 0.2723 7.6416 -3.4009 19 6 0.5901 8.3827 -2.2715 20 6 0.4406 9.7558 -2.2821 21 6 -0.0358 10.3923 -3.4132 22 6 -0.3594 9.6555 -4.5400 23 9 -0.8252 10.2792 -5.6442 24 6 -0.2055 8.2802 -4.5353 25 1 -0.3633 0.5562 -0.8641 26 1 -0.3633 -1.0265 -0.0496 27 1 -0.3633 0.4702 0.9138 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 5.8694 0.4838 2.1274 31 1 2.3005 1.8649 -1.9980 32 1 0.8765 3.7752 -0.2616 33 1 2.5425 3.9603 -0.8601 34 1 1.7039 3.9627 -3.1936 35 1 0.0378 3.7776 -2.5951 36 1 0.2410 5.9234 -1.3684 37 1 1.9070 6.1078 -1.9673 38 1 0.9585 7.8863 -1.3860 39 1 0.6923 10.3325 -1.4044 40 1 -0.1555 11.4657 -3.4179 41 1 -0.4573 7.7050 -5.4140 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255158132.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:47 Heat of formation + Delta-G solvation = -86.219267 kcal Electronic energy + Delta-G solvation = -20988.769432 eV Core-core repulsion = 17589.329080 eV Total energy + Delta-G solvation = -3399.440352 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.98180 -41.12146 -38.65728 -38.12713 -35.26948 -33.99288 -32.28739 -31.47614 -30.58030 -28.80035 -26.04786 -24.27155 -23.93893 -23.05724 -22.18936 -21.52127 -19.57918 -19.08097 -17.64838 -17.39321 -17.21709 -17.03037 -16.99299 -16.61014 -16.07355 -15.51826 -15.34448 -15.15428 -14.76160 -14.72661 -14.27251 -13.86628 -13.67882 -13.54772 -13.28103 -13.06721 -12.92161 -12.68503 -12.51821 -12.46679 -12.15424 -12.02716 -11.88284 -11.56860 -11.55541 -11.27559 -11.17719 -10.69624 -9.93511 -9.33610 -9.10188 -8.34112 -6.39384 0.08699 0.26739 1.30866 1.35014 1.45802 1.96918 2.29443 2.56723 3.01741 3.29007 3.56752 3.75419 3.95056 3.97381 4.07423 4.08933 4.24176 4.33731 4.37705 4.40603 4.48936 4.51249 4.61482 4.72930 4.79297 4.96197 4.98297 5.06877 5.12824 5.18739 5.19940 5.24990 5.32996 5.34151 5.46520 5.51101 5.65677 5.71113 6.07563 6.31595 6.39602 6.62492 6.78331 7.29952 8.82117 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.030408 B = 0.002696 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.578059 B =10384.683790 C =10807.104742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.118 4.118 3 C 0.189 3.811 4 H 0.029 0.971 5 C -0.546 4.546 6 H 0.034 0.966 7 C 0.015 3.985 8 N -0.947 5.947 9 Si 0.950 3.050 10 H -0.268 1.268 11 H -0.301 1.301 12 H -0.244 1.244 13 N -0.672 5.672 14 C 0.070 3.930 15 C -0.101 4.101 16 C 0.064 3.936 17 O -0.325 6.325 18 C 0.146 3.854 19 C -0.224 4.224 20 C -0.046 4.046 21 C -0.193 4.193 22 C 0.122 3.878 23 F -0.142 7.142 24 C -0.208 4.208 25 H 0.070 0.930 26 H 0.055 0.945 27 H 0.042 0.958 28 H 0.054 0.946 29 H 0.032 0.968 30 H 0.265 0.735 31 H 0.333 0.667 32 H 0.072 0.928 33 H 0.016 0.984 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.149 0.851 39 H 0.167 0.833 40 H 0.158 0.842 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.707 15.922 -6.589 22.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.157 4.157 3 C 0.079 3.921 4 H 0.047 0.953 5 C -0.585 4.585 6 H 0.052 0.948 7 C -0.183 4.183 8 N -0.587 5.587 9 Si 0.778 3.222 10 H -0.194 1.194 11 H -0.229 1.229 12 H -0.168 1.168 13 N -0.300 5.300 14 C -0.060 4.060 15 C -0.139 4.139 16 C -0.011 4.011 17 O -0.239 6.239 18 C 0.100 3.900 19 C -0.242 4.242 20 C -0.063 4.063 21 C -0.212 4.212 22 C 0.103 3.897 23 F -0.121 7.121 24 C -0.227 4.227 25 H 0.089 0.911 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.150 0.850 32 H 0.090 0.910 33 H 0.034 0.966 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.166 0.834 39 H 0.185 0.815 40 H 0.176 0.824 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -14.314 15.642 -6.589 22.203 hybrid contribution 1.371 -0.225 0.556 1.497 sum -12.942 15.417 -6.033 21.014 Atomic orbital electron populations 1.21657 0.94494 1.01199 1.01935 1.21768 0.96565 0.97666 0.99652 1.19442 0.91122 0.92177 0.89317 0.95346 1.22084 0.92917 1.37801 1.05731 0.94780 1.25871 0.95811 0.96053 1.00600 1.70069 1.11035 1.46887 1.30736 0.85821 0.79573 0.79609 0.77239 1.19382 1.22942 1.16772 1.60720 1.54119 1.07529 1.07639 1.21671 0.98669 0.88603 0.97029 1.21321 1.03070 0.91678 0.97838 1.22874 0.99495 0.93562 0.85203 1.86030 1.80409 1.17739 1.39688 1.18836 0.94345 0.82921 0.93942 1.21673 1.07778 0.95985 0.98797 1.21186 0.93665 0.93294 0.98195 1.21361 1.05335 1.02004 0.92476 1.17473 0.98381 0.89923 0.83936 1.91493 1.86206 1.82513 1.51839 1.20370 1.09205 0.93300 0.99835 0.91073 0.92598 0.93840 0.92767 0.94983 0.92581 0.85019 0.90992 0.96605 0.91614 0.89979 0.90094 0.91214 0.83376 0.81538 0.82446 0.84077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.40 9.83 71.98 0.71 -3.69 16 2 C -0.12 -4.81 5.11 30.59 0.16 -4.65 16 3 C 0.19 8.33 1.56 44.17 0.07 8.40 16 4 H 0.03 1.29 6.76 -2.39 -0.02 1.27 16 5 C -0.55 -29.81 9.05 25.60 0.23 -29.58 16 6 H 0.03 2.06 7.97 -2.91 -0.02 2.04 16 7 C 0.01 0.84 5.45 84.65 0.46 1.30 16 8 N -0.95 -58.22 13.96 21.45 0.30 -57.92 16 9 Si 0.95 44.07 24.41 68.60 1.67 45.74 16 10 H -0.27 -11.93 6.83 99.48 0.68 -11.25 16 11 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 12 H -0.24 -10.40 6.53 99.48 0.65 -9.75 16 13 N -0.67 -24.89 5.63 -495.47 -2.79 -27.69 16 14 C 0.07 2.23 5.51 86.30 0.48 2.71 16 15 C -0.10 -2.57 5.89 30.59 0.18 -2.39 16 16 C 0.06 1.39 4.74 71.98 0.34 1.73 16 17 O -0.32 -7.93 10.14 -92.39 -0.94 -8.87 16 18 C 0.15 3.23 6.68 22.50 0.15 3.38 16 19 C -0.22 -3.99 9.04 22.37 0.20 -3.79 16 20 C -0.05 -0.64 10.04 22.25 0.22 -0.42 16 21 C -0.19 -2.99 10.02 22.33 0.22 -2.76 16 22 C 0.12 2.43 7.30 22.36 0.16 2.59 16 23 F -0.14 -2.97 17.27 44.97 0.78 -2.19 16 24 C -0.21 -4.50 9.97 22.41 0.22 -4.28 16 25 H 0.07 2.20 7.68 -2.39 -0.02 2.19 16 26 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.03 1.38 3.21 -2.38 -0.01 1.37 16 30 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 31 H 0.33 12.77 8.46 -89.70 -0.76 12.01 16 32 H 0.07 2.17 7.92 -2.39 -0.02 2.15 16 33 H 0.02 0.56 8.12 -2.39 -0.02 0.54 16 34 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.08 1.51 7.65 -2.39 -0.02 1.49 16 37 H 0.07 1.46 7.67 -2.39 -0.02 1.44 16 38 H 0.15 2.25 6.30 -2.91 -0.02 2.23 16 39 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 40 H 0.16 1.67 8.06 -2.91 -0.02 1.64 16 41 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -63.78 337.00 3.01 -60.76 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: 0.18 Total: 21.62 kcal Atomic # 6 Polarization: -35.27 SS G_CDS: 3.81 Total: -31.46 kcal Atomic # 7 Polarization: -83.11 SS G_CDS: -2.49 Total: -85.61 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: -0.94 Total: -8.87 kcal Atomic # 9 Polarization: -2.97 SS G_CDS: 0.78 Total: -2.19 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.67 Total: 45.74 kcal Total: -63.78 3.01 -60.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158132.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.455 kcal (2) G-P(sol) polarization free energy of solvation -63.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds