Wall clock time and date at job start Tue Mar 31 2020 05:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46988 * 2 1 4 4 H 1.08997 * 109.46949 * 179.01930 * 3 2 1 5 5 C 1.50692 * 109.47460 * 59.01402 * 3 2 1 6 6 H 1.08006 * 120.00317 * 239.99887 * 5 3 2 7 7 C 1.37880 * 120.00280 * 60.00098 * 5 3 2 8 8 N 1.31519 * 119.99722 * 359.97438 * 7 5 3 9 9 Si 1.86791 * 120.00187 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47210 * 90.00181 * 9 7 5 11 11 H 1.48507 * 109.46966 * 209.99643 * 9 7 5 12 12 H 1.48492 * 109.47525 * 330.00149 * 9 7 5 13 13 N 1.46903 * 109.46815 * 299.01019 * 3 2 1 14 14 C 1.46893 * 111.00236 * 273.52051 * 13 3 2 15 15 C 1.50702 * 109.47099 * 181.45679 * 14 13 3 16 16 C 1.38618 * 120.80238 * 2.86284 * 15 14 13 17 17 N 1.32312 * 119.10667 * 180.02562 * 16 15 14 18 18 C 1.31810 * 120.82043 * 359.97438 * 17 16 15 19 19 N 1.31782 * 121.75005 * 0.02562 * 18 17 16 20 20 C 1.32349 * 120.82050 * 359.97438 * 19 18 17 21 21 C 1.50699 * 120.44759 * 179.97438 * 20 19 18 22 22 C 1.53007 * 109.46772 * 293.93627 * 21 20 19 23 23 C 1.52994 * 109.47341 * 53.93865 * 21 20 19 24 24 F 1.39898 * 109.47306 * 173.93919 * 21 20 19 25 25 H 1.08997 * 109.47346 * 184.62245 * 1 2 3 26 26 H 1.08998 * 109.47567 * 304.62668 * 1 2 3 27 27 H 1.09000 * 109.46819 * 64.62736 * 1 2 3 28 28 H 1.09000 * 109.46855 * 239.99483 * 2 1 3 29 29 H 1.09004 * 109.46257 * 119.99749 * 2 1 3 30 30 H 0.96989 * 120.00286 * 179.97438 * 8 7 5 31 31 H 1.00901 * 110.99853 * 149.56015 * 13 3 2 32 32 H 1.09000 * 109.47521 * 61.45806 * 14 13 3 33 33 H 1.09004 * 109.47283 * 301.45520 * 14 13 3 34 34 H 1.08004 * 120.44271 * 359.97438 * 16 15 14 35 35 H 1.07993 * 119.12483 * 180.28380 * 18 17 16 36 36 H 1.09002 * 109.47089 * 60.00360 * 22 21 20 37 37 H 1.09011 * 109.46586 * 179.97438 * 22 21 20 38 38 H 1.08997 * 109.47069 * 299.99588 * 22 21 20 39 39 H 1.08993 * 109.47530 * 59.99696 * 23 21 20 40 40 H 1.09003 * 109.47683 * 180.02562 * 23 21 20 41 41 H 1.09008 * 109.46757 * 299.99801 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1298 1.4425 0.0176 5 6 1.5179 2.1599 1.2180 6 1 0.8987 3.0375 1.1038 7 6 1.8306 1.6962 2.4782 8 7 2.5842 0.6274 2.6173 9 14 1.1839 2.5860 3.9879 10 1 -0.1308 2.0138 4.3745 11 1 2.1442 2.4212 5.1088 12 1 1.0243 4.0300 3.6810 13 7 1.5699 2.1280 -1.2113 14 6 2.4907 1.9044 -2.3337 15 6 1.9956 2.6503 -3.5459 16 6 0.8651 3.4494 -3.4749 17 7 0.4598 4.0889 -4.5600 18 6 1.1167 3.9735 -5.6969 19 7 2.1949 3.2230 -5.8017 20 6 2.6594 2.5539 -4.7585 21 6 3.8928 1.6978 -4.8880 22 6 3.6022 0.5232 -5.8244 23 6 5.0374 2.5358 -5.4609 24 9 4.2567 1.2107 -3.6281 25 1 -0.3634 -1.0243 0.0828 26 1 -0.3634 0.5839 0.8456 27 1 -0.3633 0.4404 -0.9286 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 2.8045 0.3013 3.5038 31 1 1.4397 3.1140 -1.0412 32 1 2.5388 0.8387 -2.5575 33 1 3.4841 2.2646 -2.0661 34 1 0.3221 3.5480 -2.5465 35 1 0.7643 4.5113 -6.5645 36 1 3.3187 0.9026 -6.8061 37 1 4.4946 -0.0959 -5.9184 38 1 2.7868 -0.0739 -5.4161 39 1 5.2444 3.3725 -4.7939 40 1 5.9295 1.9164 -5.5550 41 1 4.7538 2.9152 -6.4427 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255158279.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:20 Heat of formation + Delta-G solvation = 0.245607 kcal Electronic energy + Delta-G solvation = -22809.920070 eV Core-core repulsion = 19446.521868 eV Total energy + Delta-G solvation = -3363.398202 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.160 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -47.99777 -40.99735 -36.54772 -35.36415 -33.72884 -32.41301 -31.47777 -29.99958 -27.65833 -26.81456 -25.33011 -24.67332 -23.13372 -22.10440 -20.98288 -19.10881 -17.73022 -17.32903 -16.52307 -15.81035 -15.35293 -14.95127 -14.90353 -14.60507 -14.37015 -14.06857 -13.70091 -13.35377 -12.96473 -12.85832 -12.68595 -12.42191 -12.27852 -12.16213 -11.91268 -11.62907 -11.32866 -11.24360 -10.96470 -10.81560 -10.63688 -10.47510 -10.38853 -10.14899 -9.73873 -9.40371 -9.15320 -9.10395 -8.77488 -8.47681 -7.33130 -6.03540 -4.09341 0.93276 1.09146 3.28767 3.35800 3.38103 3.64196 3.76336 4.23741 4.32903 4.38726 4.42437 4.61677 4.69021 4.89037 5.15974 5.27657 5.31225 5.36710 5.47711 5.49509 5.55652 5.80561 5.87784 5.93271 6.02446 6.12829 6.33215 6.49206 6.55248 6.67402 6.84604 6.98477 7.22354 7.28002 7.47244 7.72464 7.76075 7.81826 8.09445 8.20105 8.32832 8.59079 8.98300 9.55466 11.02372 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.021964 B = 0.004748 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.529228 B = 5895.948244 C = 6403.667642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.102 4.102 3 C 0.218 3.782 4 H 0.004 0.996 5 C -0.514 4.514 6 H 0.059 0.941 7 C 0.065 3.935 8 N -0.887 5.887 9 Si 0.893 3.107 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.691 5.691 14 C 0.104 3.896 15 C -0.153 4.153 16 C 0.162 3.838 17 N -0.517 5.517 18 C 0.274 3.726 19 N -0.509 5.509 20 C 0.135 3.865 21 C 0.170 3.830 22 C -0.164 4.164 23 C -0.162 4.162 24 F -0.187 7.187 25 H 0.013 0.987 26 H 0.057 0.943 27 H 0.039 0.961 28 H 0.010 0.990 29 H 0.087 0.913 30 H 0.261 0.739 31 H 0.328 0.672 32 H 0.092 0.908 33 H 0.053 0.947 34 H 0.183 0.817 35 H 0.194 0.806 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.226 2.409 -16.136 16.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.141 4.141 3 C 0.111 3.889 4 H 0.021 0.979 5 C -0.553 4.553 6 H 0.077 0.923 7 C -0.138 4.138 8 N -0.526 5.526 9 Si 0.721 3.279 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.323 5.323 14 C -0.027 4.027 15 C -0.157 4.157 16 C -0.004 4.004 17 N -0.230 5.230 18 C -0.014 4.014 19 N -0.222 5.222 20 C -0.012 4.012 21 C 0.151 3.849 22 C -0.222 4.222 23 C -0.220 4.220 24 F -0.167 7.167 25 H 0.032 0.968 26 H 0.076 0.924 27 H 0.058 0.942 28 H 0.028 0.972 29 H 0.105 0.895 30 H 0.071 0.929 31 H 0.145 0.855 32 H 0.110 0.890 33 H 0.071 0.929 34 H 0.200 0.800 35 H 0.210 0.790 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.566 2.265 -16.938 17.160 hybrid contribution 0.618 0.529 1.933 2.097 sum 2.184 2.794 -15.005 15.418 Atomic orbital electron populations 1.21454 0.97537 0.97471 1.01232 1.21429 0.95001 0.98182 0.99455 1.19116 0.93366 0.91478 0.84911 0.97851 1.21163 1.31795 1.12026 0.90316 0.92290 1.24875 0.95002 0.94998 0.98881 1.69883 1.36862 1.22867 1.22959 0.86577 0.78692 0.80033 0.82575 1.20627 1.21341 1.19988 1.60867 1.48069 1.15973 1.07432 1.21180 0.94335 0.99379 0.87771 1.21870 0.97209 0.99231 0.97383 1.23372 0.91701 0.88172 0.97163 1.68445 1.32178 1.22173 1.00196 1.24823 0.87680 0.93252 0.95614 1.67955 1.14300 1.08351 1.31642 1.21635 0.95649 0.94505 0.89430 1.19429 0.91383 0.93400 0.80713 1.22321 1.03458 0.96688 0.99700 1.22298 0.96790 1.00205 1.02694 1.92953 1.92451 1.89108 1.42183 0.96806 0.92378 0.94155 0.97152 0.89517 0.92924 0.85484 0.88994 0.92949 0.80049 0.78967 0.89914 0.90537 0.91286 0.91570 0.90726 0.89647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.65 9.53 37.16 0.35 -2.30 16 2 C -0.10 -2.43 5.59 -26.73 -0.15 -2.58 16 3 C 0.22 5.26 2.31 -68.87 -0.16 5.10 16 4 H 0.00 0.10 7.75 -51.93 -0.40 -0.30 16 5 C -0.51 -13.38 7.20 -34.44 -0.25 -13.63 16 6 H 0.06 1.51 7.60 -52.48 -0.40 1.12 16 7 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 8 N -0.89 -24.69 11.33 55.43 0.63 -24.06 16 9 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 13 N -0.69 -13.79 4.86 -109.23 -0.53 -14.32 16 14 C 0.10 1.84 4.00 -4.98 -0.02 1.82 16 15 C -0.15 -2.40 5.90 -104.36 -0.62 -3.02 16 16 C 0.16 2.49 10.40 -17.20 -0.18 2.31 16 17 N -0.52 -7.56 10.44 -14.58 -0.15 -7.72 16 18 C 0.27 3.48 12.29 -92.15 -1.13 2.35 16 19 N -0.51 -6.74 9.98 -10.80 -0.11 -6.85 16 20 C 0.14 1.91 5.48 -82.25 -0.45 1.46 16 21 C 0.17 2.12 1.61 -91.77 -0.15 1.97 16 22 C -0.16 -1.70 8.89 37.16 0.33 -1.37 16 23 C -0.16 -1.66 8.79 37.15 0.33 -1.33 16 24 F -0.19 -2.79 12.11 2.25 0.03 -2.76 16 25 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 26 H 0.06 1.38 7.02 -51.93 -0.36 1.02 16 27 H 0.04 0.84 7.78 -51.93 -0.40 0.44 16 28 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 16 29 H 0.09 2.30 6.10 -51.93 -0.32 1.99 16 30 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.33 6.33 6.85 -39.29 -0.27 6.06 16 32 H 0.09 1.72 6.54 -51.93 -0.34 1.38 16 33 H 0.05 0.99 6.92 -51.93 -0.36 0.63 16 34 H 0.18 2.76 6.44 -52.48 -0.34 2.42 16 35 H 0.19 1.72 8.06 -52.49 -0.42 1.30 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 0.67 8.14 -51.92 -0.42 0.24 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.08 0.80 7.97 -51.92 -0.41 0.39 16 LS Contribution 330.63 15.07 4.98 4.98 Total: -1.00 -28.22 330.63 -8.45 -36.67 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -6.09 Total: 5.83 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -2.19 Total: -7.58 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: -0.16 Total: -52.95 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.03 Total: -2.76 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.22 -8.45 -36.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158279.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.915 kcal (2) G-P(sol) polarization free energy of solvation -28.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds