Wall clock time and date at job start Tue Mar 31 2020 05:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47568 * 2 1 4 4 H 1.08999 * 109.47585 * 185.32579 * 3 2 1 5 5 C 1.50702 * 109.47083 * 305.33447 * 3 2 1 6 6 H 1.07994 * 120.00579 * 119.99527 * 5 3 2 7 7 C 1.37880 * 119.99484 * 299.99492 * 5 3 2 8 8 N 1.31518 * 120.00252 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00059 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47096 * 59.99862 * 9 7 5 11 11 H 1.48496 * 109.47427 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47062 * 300.00157 * 9 7 5 13 13 N 1.46909 * 109.46927 * 65.32644 * 3 2 1 14 14 C 1.46903 * 110.99643 * 103.54843 * 13 3 2 15 15 C 1.50703 * 109.46766 * 179.42876 * 14 13 3 16 16 C 1.38618 * 120.79653 * 258.36201 * 15 14 13 17 17 N 1.32323 * 119.10117 * 180.02562 * 16 15 14 18 18 C 1.31817 * 120.81683 * 359.97438 * 17 16 15 19 19 N 1.31783 * 121.75257 * 0.02562 * 18 17 16 20 20 C 1.32343 * 120.82000 * 359.70615 * 19 18 17 21 21 C 1.50703 * 120.44945 * 180.28577 * 20 19 18 22 22 C 1.52998 * 109.47140 * 255.79447 * 21 20 19 23 23 C 1.53006 * 109.46645 * 15.79393 * 21 20 19 24 24 F 1.39901 * 109.47054 * 135.79127 * 21 20 19 25 25 H 1.09001 * 109.47467 * 182.09030 * 1 2 3 26 26 H 1.08992 * 109.47150 * 302.09573 * 1 2 3 27 27 H 1.09007 * 109.46904 * 62.09592 * 1 2 3 28 28 H 1.08999 * 109.47018 * 239.99613 * 2 1 3 29 29 H 1.08998 * 109.46781 * 120.00029 * 2 1 3 30 30 H 0.96993 * 119.99923 * 180.02562 * 8 7 5 31 31 H 1.00896 * 110.99915 * 227.50167 * 13 3 2 32 32 H 1.08998 * 109.46835 * 299.42839 * 14 13 3 33 33 H 1.08997 * 109.47314 * 59.42576 * 14 13 3 34 34 H 1.07998 * 120.45065 * 359.97438 * 16 15 14 35 35 H 1.07997 * 119.11936 * 179.97438 * 18 17 16 36 36 H 1.08997 * 109.47050 * 60.00139 * 22 21 20 37 37 H 1.09001 * 109.46809 * 179.97438 * 22 21 20 38 38 H 1.08994 * 109.47184 * 299.99366 * 22 21 20 39 39 H 1.08991 * 109.47157 * 63.32330 * 23 21 20 40 40 H 1.09006 * 109.46749 * 183.32094 * 23 21 20 41 41 H 1.08999 * 109.47363 * 303.31866 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1259 1.4439 -0.0954 5 6 1.4329 2.1900 -1.1591 6 1 0.8242 3.0637 -0.9789 7 6 1.6544 1.7583 -2.4497 8 7 2.3952 0.6940 -2.6692 9 14 0.9024 2.6852 -3.8866 10 1 1.3979 4.0851 -3.8864 11 1 1.2887 2.0241 -5.1589 12 1 -0.5770 2.6839 -3.7568 13 7 1.6582 2.0968 1.2586 14 6 2.8068 2.1980 2.1689 15 6 2.3809 2.8856 3.4405 16 6 2.6813 4.2209 3.6602 17 7 2.2914 4.7909 4.7889 18 6 1.6256 4.1054 5.6969 19 7 1.3226 2.8348 5.5222 20 6 1.6750 2.1996 4.4159 21 6 1.3185 0.7482 4.2221 22 6 2.5621 -0.1159 4.4401 23 6 0.2375 0.3498 5.2290 24 9 0.8387 0.5555 2.9221 25 1 -0.3634 -1.0270 0.0375 26 1 -0.3633 0.5460 0.8705 27 1 -0.3633 0.4810 -0.9083 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.5513 0.3906 -3.5771 31 1 1.2528 3.0044 1.0857 32 1 3.1749 1.1989 2.4018 33 1 3.5989 2.7749 1.6916 34 1 3.2268 4.7880 2.9206 35 1 1.3211 4.5979 6.6085 36 1 2.9358 0.0342 5.4529 37 1 2.3040 -1.1657 4.3004 38 1 3.3320 0.1679 3.7228 39 1 -0.6685 0.9241 5.0357 40 1 0.0218 -0.7140 5.1285 41 1 0.5892 0.5553 6.2400 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255158280.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:23 Heat of formation + Delta-G solvation = 4.572339 kcal Electronic energy + Delta-G solvation = -23396.996404 eV Core-core repulsion = 20033.785823 eV Total energy + Delta-G solvation = -3363.210581 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.160 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -47.12034 -41.00017 -36.43252 -35.22774 -33.76307 -32.30261 -31.36635 -30.00320 -27.62328 -26.59049 -24.96007 -24.77036 -23.10435 -21.95636 -20.74395 -19.02612 -17.72434 -17.27559 -16.56044 -15.46650 -15.04051 -14.84522 -14.62172 -14.48348 -14.34975 -13.71746 -13.58269 -13.49397 -12.85541 -12.69559 -12.33153 -12.17964 -12.09767 -11.88186 -11.69414 -11.49687 -11.04575 -10.97441 -10.87886 -10.79943 -10.58299 -10.43155 -10.34389 -10.12130 -9.64269 -9.29379 -9.15581 -9.11295 -8.78256 -8.43484 -7.18455 -6.01229 -4.07258 0.94870 1.06171 3.29855 3.35013 3.37757 3.75725 3.84580 4.20799 4.40256 4.41470 4.69434 4.87521 4.92335 5.00049 5.09583 5.29132 5.38933 5.49225 5.58112 5.65146 5.72059 5.83966 5.94659 6.13585 6.20198 6.28399 6.34279 6.45760 6.65443 6.84746 6.96573 7.00331 7.30991 7.42983 7.58157 7.81532 7.83837 7.94727 8.08849 8.21731 8.38742 8.65240 9.02723 9.57269 11.03767 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.021883 B = 0.005541 C = 0.004834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.235544 B = 5052.235492 C = 5791.100364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.091 4.091 3 C 0.218 3.782 4 H 0.007 0.993 5 C -0.521 4.521 6 H 0.056 0.944 7 C 0.067 3.933 8 N -0.886 5.886 9 Si 0.890 3.110 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.277 1.277 13 N -0.664 5.664 14 C 0.101 3.899 15 C -0.153 4.153 16 C 0.147 3.853 17 N -0.520 5.520 18 C 0.279 3.721 19 N -0.509 5.509 20 C 0.163 3.837 21 C 0.165 3.835 22 C -0.170 4.170 23 C -0.157 4.157 24 F -0.149 7.149 25 H 0.009 0.991 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.077 0.923 29 H 0.015 0.985 30 H 0.261 0.739 31 H 0.327 0.673 32 H 0.081 0.919 33 H 0.033 0.967 34 H 0.168 0.832 35 H 0.193 0.807 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.502 0.816 14.988 15.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.130 4.130 3 C 0.111 3.889 4 H 0.025 0.975 5 C -0.560 4.560 6 H 0.074 0.926 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.718 3.282 10 H -0.205 1.205 11 H -0.213 1.213 12 H -0.202 1.202 13 N -0.295 5.295 14 C -0.029 4.029 15 C -0.157 4.157 16 C -0.019 4.019 17 N -0.233 5.233 18 C -0.010 4.010 19 N -0.223 5.223 20 C 0.015 3.985 21 C 0.146 3.854 22 C -0.228 4.228 23 C -0.214 4.214 24 F -0.129 7.129 25 H 0.028 0.972 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.095 0.905 29 H 0.034 0.966 30 H 0.071 0.929 31 H 0.145 0.855 32 H 0.099 0.901 33 H 0.051 0.949 34 H 0.185 0.815 35 H 0.210 0.790 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.047 0.561 15.911 15.921 hybrid contribution 0.353 0.958 -2.111 2.345 sum 0.400 1.519 13.800 13.889 Atomic orbital electron populations 1.21441 0.97695 0.97005 1.01341 1.21310 0.95032 0.97814 0.98842 1.19139 0.94055 0.91983 0.83734 0.97540 1.21309 1.31785 1.11937 0.90955 0.92631 1.24853 0.95076 0.94944 0.98635 1.69886 1.38247 1.23514 1.20789 0.86698 0.79800 0.79882 0.81845 1.20476 1.21336 1.20243 1.60928 1.26633 1.25598 1.16354 1.20932 0.94000 0.99041 0.88968 1.21754 0.98910 0.96163 0.98881 1.23227 0.93586 0.91537 0.93564 1.68372 1.12110 1.39894 1.02917 1.24845 0.91420 0.86977 0.97719 1.68128 1.20587 1.10917 1.22640 1.21875 0.90922 0.96717 0.88965 1.19383 0.95488 0.88441 0.82107 1.22448 0.96928 1.00512 1.02937 1.22200 0.98276 1.01746 0.99210 1.93218 1.88977 1.95250 1.35454 0.97192 0.93311 0.93203 0.90502 0.96617 0.92935 0.85539 0.90094 0.94862 0.81526 0.79006 0.91238 0.90298 0.90772 0.91549 0.91563 0.90364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.67 9.33 37.16 0.35 -2.33 16 2 C -0.09 -2.16 5.19 -26.73 -0.14 -2.30 16 3 C 0.22 5.19 2.45 -68.86 -0.17 5.02 16 4 H 0.01 0.18 7.59 -51.93 -0.39 -0.21 16 5 C -0.52 -13.58 7.14 -34.44 -0.25 -13.83 16 6 H 0.06 1.45 7.39 -52.49 -0.39 1.06 16 7 C 0.07 1.80 5.25 -17.82 -0.09 1.70 16 8 N -0.89 -24.58 11.38 55.43 0.63 -23.95 16 9 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 N -0.66 -13.27 3.65 -109.21 -0.40 -13.67 16 14 C 0.10 1.70 4.62 -4.97 -0.02 1.68 16 15 C -0.15 -2.30 5.36 -104.35 -0.56 -2.86 16 16 C 0.15 2.05 10.97 -17.20 -0.19 1.86 16 17 N -0.52 -7.22 10.44 -14.58 -0.15 -7.37 16 18 C 0.28 3.54 12.29 -92.14 -1.13 2.41 16 19 N -0.51 -7.08 9.12 -10.80 -0.10 -7.17 16 20 C 0.16 2.41 5.76 -82.25 -0.47 1.93 16 21 C 0.17 2.34 1.20 -91.77 -0.11 2.23 16 22 C -0.17 -2.05 8.73 37.16 0.32 -1.72 16 23 C -0.16 -1.91 8.38 37.16 0.31 -1.60 16 24 F -0.15 -2.64 11.01 2.25 0.02 -2.61 16 25 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 26 H 0.05 1.08 6.52 -51.93 -0.34 0.74 16 27 H 0.05 1.23 7.11 -51.92 -0.37 0.86 16 28 H 0.08 2.03 6.23 -51.93 -0.32 1.71 16 29 H 0.02 0.34 7.63 -51.93 -0.40 -0.05 16 30 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.33 6.72 7.86 -39.29 -0.31 6.41 16 32 H 0.08 1.37 5.06 -51.93 -0.26 1.10 16 33 H 0.03 0.56 7.99 -51.93 -0.41 0.14 16 34 H 0.17 2.00 8.06 -52.49 -0.42 1.58 16 35 H 0.19 1.73 8.06 -52.49 -0.42 1.31 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.94 5.72 -51.93 -0.30 0.65 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.08 0.87 7.75 -51.93 -0.40 0.47 16 LS Contribution 325.09 15.07 4.90 4.90 Total: -1.00 -28.45 325.09 -8.26 -36.70 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -5.99 Total: 5.06 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: -2.15 Total: -7.80 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: -0.02 Total: -52.16 kcal Atomic # 9 Polarization: -2.64 SS G_CDS: 0.02 Total: -2.61 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.45 -8.26 -36.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158280.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.275 kcal (2) G-P(sol) polarization free energy of solvation -28.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds