Wall clock time and date at job start Tue Mar 31 2020 05:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47218 * 2 1 4 4 H 1.08999 * 109.47058 * 176.00604 * 3 2 1 5 5 C 1.50698 * 109.46780 * 56.00803 * 3 2 1 6 6 H 1.08002 * 119.99481 * 244.33065 * 5 3 2 7 7 C 1.37874 * 120.00451 * 64.33278 * 5 3 2 8 8 N 1.31518 * 119.99836 * 7.70955 * 7 5 3 9 9 Si 1.86796 * 120.00230 * 187.70874 * 7 5 3 10 10 H 1.48492 * 109.47153 * 90.00092 * 9 7 5 11 11 H 1.48502 * 109.47283 * 210.00350 * 9 7 5 12 12 H 1.48503 * 109.47182 * 330.00001 * 9 7 5 13 13 N 1.46898 * 109.46981 * 296.00490 * 3 2 1 14 14 C 1.46893 * 111.00225 * 274.26483 * 13 3 2 15 15 H 1.08998 * 109.47239 * 36.32283 * 14 13 3 16 16 C 1.53000 * 109.47065 * 276.32387 * 14 13 3 17 17 O 1.42901 * 109.47119 * 295.00310 * 16 14 13 18 18 C 1.50694 * 109.47293 * 156.32633 * 14 13 3 19 19 C 1.38267 * 119.98926 * 25.00019 * 18 14 13 20 20 C 1.38227 * 120.05211 * 180.02562 * 19 18 14 21 21 C 1.38214 * 120.02542 * 359.97438 * 20 19 18 22 22 C 1.38440 * 119.97811 * 359.97438 * 21 20 19 23 23 F 1.35098 * 120.02548 * 180.02562 * 22 21 20 24 24 C 1.38180 * 119.98986 * 204.72402 * 18 14 13 25 25 C 1.50702 * 120.00997 * 0.02562 * 24 18 14 26 26 H 1.09005 * 109.46921 * 185.92212 * 1 2 3 27 27 H 1.08997 * 109.46780 * 305.92187 * 1 2 3 28 28 H 1.08996 * 109.46988 * 65.92320 * 1 2 3 29 29 H 1.09001 * 109.46912 * 239.99806 * 2 1 3 30 30 H 1.09007 * 109.47051 * 119.99975 * 2 1 3 31 31 H 0.97004 * 119.99831 * 3.90999 * 8 7 5 32 32 H 1.00899 * 110.99689 * 38.21678 * 13 3 2 33 33 H 1.09007 * 109.47155 * 54.99940 * 16 14 13 34 34 H 1.08999 * 109.47632 * 174.99776 * 16 14 13 35 35 H 0.96703 * 113.99607 * 179.97438 * 17 16 14 36 36 H 1.08004 * 119.97044 * 359.97438 * 19 18 14 37 37 H 1.07995 * 119.98289 * 179.97438 * 20 19 18 38 38 H 1.08005 * 120.00928 * 180.02562 * 21 20 19 39 39 H 1.08996 * 109.47389 * 89.99694 * 25 24 18 40 40 H 1.09000 * 109.47020 * 209.99845 * 25 24 18 41 41 H 1.09002 * 109.46892 * 329.99164 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1277 1.4433 0.0716 5 6 1.4586 2.1808 1.1780 6 1 0.7897 3.0134 1.0168 7 6 1.7804 1.7936 2.4615 8 7 2.7081 0.8829 2.6605 9 14 0.8987 2.5625 3.9179 10 1 -0.3083 1.7617 4.2448 11 1 1.8091 2.5872 5.0909 12 1 0.4946 3.9499 3.5757 13 7 1.6308 2.1066 -1.2448 14 6 2.5968 1.8492 -2.3210 15 1 2.9791 0.8324 -2.2306 16 6 3.7564 2.8415 -2.2136 17 8 3.2733 4.1658 -2.4479 18 6 1.9172 2.0135 -3.6559 19 6 0.8016 2.8225 -3.7686 20 6 0.1768 2.9737 -4.9923 21 6 0.6672 2.3166 -6.1050 22 6 1.7847 1.5071 -5.9938 23 9 2.2651 0.8648 -7.0809 24 6 2.4125 1.3601 -4.7682 25 6 3.6317 0.4828 -4.6463 26 1 -0.3633 -1.0222 0.1060 27 1 -0.3633 0.6029 0.8322 28 1 -0.3633 0.4192 -0.9382 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.2055 0.5249 1.9086 32 1 0.7017 1.8228 -1.5173 33 1 4.1919 2.7848 -1.2159 34 1 4.5155 2.5950 -2.9559 35 1 3.9561 4.8486 -2.3949 36 1 0.4175 3.3360 -2.8995 37 1 -0.6947 3.6056 -5.0789 38 1 0.1791 2.4353 -7.0612 39 1 3.3243 -0.5359 -4.4105 40 1 4.1789 0.4882 -5.5890 41 1 4.2740 0.8618 -3.8513 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255158588.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:41 Heat of formation + Delta-G solvation = -77.464862 kcal Electronic energy + Delta-G solvation = -22949.777024 eV Core-core repulsion = 19550.716292 eV Total energy + Delta-G solvation = -3399.060732 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.82768 -39.66808 -37.15161 -35.83119 -33.57849 -32.55533 -31.16280 -29.61588 -27.62254 -26.93312 -25.43376 -23.64193 -23.11493 -21.50989 -20.40766 -19.25721 -17.51938 -17.12621 -16.57556 -16.15612 -15.64830 -15.53926 -15.25020 -14.23839 -13.98714 -13.70730 -13.53965 -13.45533 -13.20407 -13.15323 -12.90298 -12.77738 -12.46695 -12.21611 -11.76890 -11.69498 -11.27233 -11.13980 -11.07786 -10.77792 -10.58149 -10.24653 -10.12117 -10.08784 -9.86981 -9.48854 -8.71689 -8.55081 -8.45263 -8.25779 -7.35126 -6.30446 -3.98569 1.29556 1.33469 3.45759 3.48916 3.64750 3.70481 4.27143 4.53211 4.62096 4.79297 4.80796 4.96538 5.11388 5.18143 5.38745 5.45116 5.52232 5.61238 5.68745 5.74093 5.83883 5.92726 6.02611 6.08068 6.12872 6.15685 6.23227 6.28475 6.30672 6.52462 6.66288 6.69445 6.96506 7.01133 7.05873 7.23223 7.29649 7.88592 8.06726 8.25259 8.39995 8.66589 8.92530 9.68508 11.05470 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.025029 B = 0.004695 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.450380 B = 5962.697190 C = 5998.361082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.152 4.152 3 C 0.203 3.797 4 H 0.024 0.976 5 C -0.565 4.565 6 H 0.056 0.944 7 C 0.018 3.982 8 N -0.917 5.917 9 Si 1.066 2.934 10 H -0.289 1.289 11 H -0.288 1.288 12 H -0.289 1.289 13 N -0.659 5.659 14 C 0.123 3.877 15 H 0.059 0.941 16 C 0.096 3.904 17 O -0.550 6.550 18 C -0.041 4.041 19 C -0.092 4.092 20 C -0.102 4.102 21 C -0.159 4.159 22 C 0.086 3.914 23 F -0.145 7.145 24 C -0.120 4.120 25 C -0.118 4.118 26 H 0.028 0.972 27 H 0.074 0.926 28 H 0.032 0.968 29 H 0.018 0.982 30 H 0.069 0.931 31 H 0.267 0.733 32 H 0.332 0.668 33 H 0.053 0.947 34 H 0.034 0.966 35 H 0.366 0.634 36 H 0.143 0.857 37 H 0.129 0.871 38 H 0.128 0.872 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.409 1.698 -14.605 14.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.192 4.192 3 C 0.095 3.905 4 H 0.042 0.958 5 C -0.604 4.604 6 H 0.075 0.925 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.895 3.105 10 H -0.216 1.216 11 H -0.214 1.214 12 H -0.215 1.215 13 N -0.291 5.291 14 C 0.012 3.988 15 H 0.076 0.924 16 C 0.017 3.983 17 O -0.353 6.353 18 C -0.041 4.041 19 C -0.110 4.110 20 C -0.120 4.120 21 C -0.178 4.178 22 C 0.067 3.933 23 F -0.124 7.124 24 C -0.121 4.121 25 C -0.174 4.174 26 H 0.047 0.953 27 H 0.093 0.907 28 H 0.051 0.949 29 H 0.037 0.963 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.152 0.848 33 H 0.071 0.929 34 H 0.052 0.948 35 H 0.211 0.789 36 H 0.161 0.839 37 H 0.147 0.853 38 H 0.146 0.854 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.805 1.911 -12.877 13.043 hybrid contribution 0.594 -0.823 -2.089 2.323 sum -0.211 1.088 -14.966 15.007 Atomic orbital electron populations 1.21591 0.96715 0.99284 1.01304 1.22230 0.96268 1.01299 0.99403 1.19395 0.95259 0.88346 0.87478 0.95839 1.21820 1.30585 1.17243 0.90759 0.92522 1.25683 0.96647 0.96057 1.00121 1.70789 1.21322 1.28127 1.35155 0.83576 0.75744 0.75590 0.75555 1.21626 1.21353 1.21471 1.60868 1.03413 1.62561 1.02298 1.20493 0.93876 0.96131 0.88277 0.92385 1.22129 0.94068 0.83286 0.98767 1.86596 1.38451 1.15763 1.94489 1.19686 0.95119 0.95229 0.94092 1.21230 0.94738 0.96950 0.98101 1.21008 0.99897 0.99043 0.92074 1.21032 0.96856 0.99606 1.00270 1.17426 0.95935 0.97110 0.82863 1.91439 1.87751 1.80152 1.53022 1.19736 0.99089 1.01320 0.91963 1.20793 0.94884 0.98724 1.03002 0.95321 0.90738 0.94930 0.96317 0.91287 0.92169 0.84833 0.92857 0.94809 0.78919 0.83897 0.85310 0.85362 0.90926 0.91396 0.90780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.69 9.39 37.16 0.35 -2.34 16 2 C -0.15 -3.36 5.46 -26.73 -0.15 -3.51 16 3 C 0.20 4.75 1.75 -68.86 -0.12 4.63 16 4 H 0.02 0.60 6.36 -51.93 -0.33 0.27 16 5 C -0.57 -14.96 7.23 -34.44 -0.25 -15.21 16 6 H 0.06 1.56 7.83 -52.49 -0.41 1.15 16 7 C 0.02 0.49 5.25 -17.82 -0.09 0.40 16 8 N -0.92 -26.33 12.91 55.43 0.72 -25.62 16 9 Si 1.07 24.70 29.91 -169.99 -5.08 19.61 16 10 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 12 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 13 N -0.66 -13.31 5.21 -102.18 -0.53 -13.84 16 14 C 0.12 2.12 1.74 -68.87 -0.12 2.00 16 15 H 0.06 1.02 6.01 -51.93 -0.31 0.71 16 16 C 0.10 1.57 6.61 37.16 0.25 1.81 16 17 O -0.55 -8.96 12.87 -35.23 -0.45 -9.41 16 18 C -0.04 -0.64 4.52 -104.64 -0.47 -1.12 16 19 C -0.09 -1.40 8.61 -39.57 -0.34 -1.74 16 20 C -0.10 -1.32 10.04 -39.59 -0.40 -1.71 16 21 C -0.16 -2.03 10.03 -39.52 -0.40 -2.42 16 22 C 0.09 1.22 7.24 -39.42 -0.29 0.93 16 23 F -0.14 -2.04 16.48 2.25 0.04 -2.00 16 24 C -0.12 -1.75 5.89 -104.55 -0.62 -2.37 16 25 C -0.12 -1.49 9.04 36.01 0.33 -1.17 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.07 1.67 6.88 -51.93 -0.36 1.31 16 28 H 0.03 0.60 6.63 -51.93 -0.34 0.26 16 29 H 0.02 0.37 7.42 -51.93 -0.39 -0.01 16 30 H 0.07 1.70 6.34 -51.93 -0.33 1.37 16 31 H 0.27 7.62 6.07 -40.82 -0.25 7.37 16 32 H 0.33 6.53 5.20 -39.29 -0.20 6.32 16 33 H 0.05 0.96 7.28 -51.92 -0.38 0.58 16 34 H 0.03 0.47 6.80 -51.93 -0.35 0.12 16 35 H 0.37 4.31 9.12 45.56 0.42 4.73 16 36 H 0.14 2.32 6.99 -52.48 -0.37 1.96 16 37 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 38 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.07 0.78 7.65 -51.93 -0.40 0.39 16 41 H 0.07 0.91 5.36 -51.93 -0.28 0.63 16 LS Contribution 325.86 15.07 4.91 4.91 Total: -1.00 -29.61 325.86 -7.49 -37.10 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -4.77 Total: 11.04 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: -2.32 Total: -21.80 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.18 Total: -39.46 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: -0.45 Total: -9.41 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.04 Total: -2.00 kcal Atomic # 14 Polarization: 24.70 SS G_CDS: -5.08 Total: 19.61 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.61 -7.49 -37.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158588.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.368 kcal (2) G-P(sol) polarization free energy of solvation -29.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds