Wall clock time and date at job start Tue Mar 31 2020 05:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47380 * 2 1 4 4 H 1.09004 * 109.46780 * 54.45371 * 3 2 1 5 5 C 1.50696 * 109.47325 * 174.45149 * 3 2 1 6 6 H 1.07998 * 119.99778 * 119.99832 * 5 3 2 7 7 C 1.37878 * 120.00117 * 300.00683 * 5 3 2 8 8 N 1.31512 * 120.00081 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99664 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47487 * 359.97438 * 9 7 5 11 11 H 1.48507 * 109.47198 * 119.99494 * 9 7 5 12 12 H 1.48501 * 109.47250 * 239.99496 * 9 7 5 13 13 N 1.46893 * 109.47162 * 294.45874 * 3 2 1 14 14 C 1.46898 * 111.00248 * 156.21596 * 13 3 2 15 15 H 1.08999 * 109.47333 * 34.11552 * 14 13 3 16 16 C 1.52998 * 109.46943 * 274.11311 * 14 13 3 17 17 O 1.42896 * 109.47459 * 295.19393 * 16 14 13 18 18 C 1.50706 * 109.47237 * 154.11422 * 14 13 3 19 19 C 1.38266 * 119.98539 * 24.72249 * 18 14 13 20 20 C 1.38219 * 120.04930 * 179.76518 * 19 18 14 21 21 C 1.38224 * 120.02854 * 0.51401 * 20 19 18 22 22 C 1.38436 * 119.97075 * 359.74081 * 21 20 19 23 23 F 1.35093 * 120.02672 * 179.97438 * 22 21 20 24 24 C 1.38172 * 119.98618 * 205.00179 * 18 14 13 25 25 C 1.50695 * 120.01573 * 359.97438 * 24 18 14 26 26 H 1.09000 * 109.46980 * 57.74342 * 1 2 3 27 27 H 1.09001 * 109.47165 * 297.74600 * 1 2 3 28 28 H 1.09003 * 109.47301 * 177.74184 * 1 2 3 29 29 H 1.09000 * 109.46685 * 119.99748 * 2 1 3 30 30 H 1.08993 * 109.47283 * 239.99984 * 2 1 3 31 31 H 0.96998 * 119.99861 * 180.02562 * 8 7 5 32 32 H 1.00899 * 111.00318 * 32.25511 * 13 3 2 33 33 H 1.08999 * 109.47275 * 55.19742 * 16 14 13 34 34 H 1.08999 * 109.46951 * 175.19452 * 16 14 13 35 35 H 0.96696 * 114.00257 * 179.97438 * 17 16 14 36 36 H 1.08006 * 119.97668 * 0.02562 * 19 18 14 37 37 H 1.08001 * 119.98909 * 180.25332 * 20 19 18 38 38 H 1.07998 * 120.01302 * 179.72106 * 21 20 19 39 39 H 1.09004 * 109.47233 * 90.00081 * 25 24 18 40 40 H 1.08999 * 109.47355 * 210.00538 * 25 24 18 41 41 H 1.09001 * 109.47317 * 330.00915 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5979 1.9842 0.8362 5 6 3.5408 1.4447 0.1374 6 1 4.1530 1.8867 -0.6347 7 6 4.1322 0.8822 1.2486 8 7 3.3866 0.3442 2.1889 9 14 5.9924 0.8843 1.4184 10 1 6.5969 1.5448 0.2337 11 1 6.3765 1.6239 2.6476 12 1 6.4829 -0.5144 1.5088 13 7 1.6627 2.0953 -1.2606 14 6 1.6105 3.5548 -1.1027 15 1 2.3761 3.8712 -0.3943 16 6 0.2317 3.9622 -0.5794 17 8 -0.7610 3.6482 -1.5581 18 6 1.8567 4.2135 -2.4357 19 6 1.5815 3.5298 -3.6056 20 6 1.8022 4.1344 -4.8288 21 6 2.3083 5.4195 -4.8839 22 6 2.5891 6.1030 -3.7133 23 9 3.0843 7.3588 -3.7659 24 6 2.3627 5.4982 -2.4882 25 6 2.6678 6.2409 -1.2130 26 1 -0.3633 0.5485 -0.8691 27 1 -0.3633 0.4784 0.9095 28 1 -0.3634 -1.0269 -0.0405 29 1 1.8933 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 3.8027 -0.0512 2.9709 32 1 0.7844 1.7371 -1.6046 33 1 0.0180 3.4202 0.3418 34 1 0.2204 5.0339 -0.3813 35 1 -1.6617 3.8795 -1.2929 36 1 1.1899 2.5242 -3.5636 37 1 1.5831 3.6010 -5.7419 38 1 2.4849 5.8900 -5.8399 39 1 3.6975 6.0431 -0.9148 40 1 2.5356 7.3106 -1.3750 41 1 1.9913 5.9061 -0.4267 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255158591.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:43 Heat of formation + Delta-G solvation = -78.294408 kcal Electronic energy + Delta-G solvation = -22943.431223 eV Core-core repulsion = 19544.334519 eV Total energy + Delta-G solvation = -3399.096704 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.63904 -39.43729 -37.15748 -35.59035 -33.35259 -32.34531 -31.43005 -29.58152 -27.64082 -26.71033 -25.96854 -23.31532 -22.68747 -21.30532 -20.03939 -19.58612 -17.34416 -16.85566 -16.26267 -16.07095 -15.47061 -15.38013 -14.91443 -14.73171 -14.39801 -13.90817 -13.51723 -13.22453 -13.03424 -12.94425 -12.74086 -12.36189 -12.11881 -12.00138 -11.72206 -11.50260 -11.30445 -11.08159 -10.98000 -10.90121 -10.64229 -10.50179 -9.98725 -9.84179 -9.73193 -9.57818 -9.08497 -8.38595 -8.35871 -8.22505 -7.28501 -5.99827 -4.03963 1.52705 1.57430 3.29653 3.38305 3.44174 3.92832 4.39667 4.46900 4.55465 4.94461 5.01495 5.21989 5.26659 5.32577 5.36882 5.52793 5.61975 5.73415 5.81149 5.88817 5.91161 6.08316 6.14144 6.17321 6.20172 6.33106 6.41362 6.45645 6.53117 6.72454 6.83936 6.98719 7.04631 7.14805 7.26912 7.47063 7.75846 7.78596 7.90915 8.25476 8.36578 8.73962 9.05409 9.61780 11.05378 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015661 B = 0.006018 C = 0.005006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.416572 B = 4651.627151 C = 5591.848243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.219 3.781 4 H 0.001 0.999 5 C -0.494 4.494 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.675 5.675 14 C 0.131 3.869 15 H 0.108 0.892 16 C 0.049 3.951 17 O -0.564 6.564 18 C -0.019 4.019 19 C -0.082 4.082 20 C -0.107 4.107 21 C -0.163 4.163 22 C 0.084 3.916 23 F -0.147 7.147 24 C -0.121 4.121 25 C -0.116 4.116 26 H 0.039 0.961 27 H 0.040 0.960 28 H 0.036 0.964 29 H 0.099 0.901 30 H 0.041 0.959 31 H 0.259 0.741 32 H 0.329 0.671 33 H 0.052 0.948 34 H 0.042 0.958 35 H 0.371 0.629 36 H 0.133 0.867 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.076 0.924 40 H 0.064 0.936 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.964 8.327 -7.818 13.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C 0.112 3.888 4 H 0.019 0.981 5 C -0.533 4.533 6 H 0.081 0.919 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.720 3.280 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.211 1.211 13 N -0.307 5.307 14 C 0.020 3.980 15 H 0.125 0.875 16 C -0.031 4.031 17 O -0.368 6.368 18 C -0.020 4.020 19 C -0.100 4.100 20 C -0.125 4.125 21 C -0.182 4.182 22 C 0.065 3.935 23 F -0.126 7.126 24 C -0.123 4.123 25 C -0.173 4.173 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.117 0.883 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.149 0.851 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.217 0.783 36 H 0.151 0.849 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.738 8.048 -8.206 12.847 hybrid contribution -0.167 0.471 1.002 1.120 sum -5.906 8.519 -7.204 12.623 Atomic orbital electron populations 1.21886 0.99556 0.99523 0.99801 1.21748 0.91266 1.00228 1.03096 1.19176 0.95397 0.90108 0.84145 0.98137 1.21268 0.91255 1.36496 1.04234 0.91944 1.24942 0.98022 0.95590 0.95862 1.69876 1.34597 1.39527 1.09578 0.86533 0.85919 0.77660 0.77875 1.19733 1.21250 1.21125 1.60692 1.35966 1.00751 1.33301 1.20526 0.93590 0.90907 0.92977 0.87460 1.22982 0.90232 0.98575 0.91267 1.86489 1.18587 1.86987 1.44768 1.19595 0.94820 0.91424 0.96150 1.21023 0.97875 1.00217 0.90900 1.20955 0.99225 0.94050 0.98275 1.20953 1.04205 0.96342 0.96730 1.17415 1.01623 0.80334 0.94166 1.91423 1.85597 1.38274 1.97303 1.19719 1.02843 0.95689 0.94019 1.20774 1.02806 0.99310 0.94396 0.94214 0.94095 0.94503 0.88269 0.94014 0.93138 0.85121 0.92969 0.93983 0.78285 0.84875 0.85723 0.85685 0.90577 0.91746 0.90959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 9.78 37.16 0.36 -2.45 16 2 C -0.12 -2.85 5.37 -26.73 -0.14 -2.99 16 3 C 0.22 5.16 1.84 -68.87 -0.13 5.03 16 4 H 0.00 0.03 7.16 -51.93 -0.37 -0.35 16 5 C -0.49 -13.16 8.43 -34.44 -0.29 -13.45 16 6 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 7 C 0.06 1.52 5.29 -17.82 -0.09 1.42 16 8 N -0.90 -24.78 11.29 55.43 0.63 -24.16 16 9 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 13 N -0.68 -13.60 5.01 -102.18 -0.51 -14.11 16 14 C 0.13 2.36 1.74 -68.86 -0.12 2.24 16 15 H 0.11 2.13 6.43 -51.93 -0.33 1.79 16 16 C 0.05 0.74 6.53 37.16 0.24 0.98 16 17 O -0.56 -7.81 12.30 -35.23 -0.43 -8.24 16 18 C -0.02 -0.32 4.65 -104.63 -0.49 -0.81 16 19 C -0.08 -1.32 9.07 -39.58 -0.36 -1.68 16 20 C -0.11 -1.50 10.04 -39.59 -0.40 -1.90 16 21 C -0.16 -2.30 10.03 -39.51 -0.40 -2.70 16 22 C 0.08 1.31 7.24 -39.42 -0.29 1.02 16 23 F -0.15 -2.27 16.48 2.25 0.04 -2.23 16 24 C -0.12 -1.96 5.89 -104.56 -0.62 -2.58 16 25 C -0.12 -1.66 9.04 36.00 0.33 -1.33 16 26 H 0.04 0.69 6.38 -51.93 -0.33 0.35 16 27 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.10 2.56 5.94 -51.93 -0.31 2.25 16 30 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 32 H 0.33 6.27 5.15 -39.29 -0.20 6.06 16 33 H 0.05 0.83 7.43 -51.93 -0.39 0.45 16 34 H 0.04 0.57 6.82 -51.93 -0.35 0.21 16 35 H 0.37 3.46 9.12 45.56 0.42 3.87 16 36 H 0.13 2.18 6.91 -52.48 -0.36 1.82 16 37 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 38 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 39 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.06 0.83 7.64 -51.93 -0.40 0.43 16 41 H 0.07 0.98 5.38 -51.93 -0.28 0.70 16 LS Contribution 330.07 15.07 4.97 4.97 Total: -1.00 -28.70 330.07 -7.71 -36.41 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -4.99 Total: 10.37 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: -2.38 Total: -19.20 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: 0.11 Total: -38.27 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: -0.43 Total: -8.24 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.04 Total: -2.23 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.70 -7.71 -36.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158591.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.887 kcal (2) G-P(sol) polarization free energy of solvation -28.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds