Wall clock time and date at job start Tue Mar 31 2020 05:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47176 * 2 1 4 4 H 1.08994 * 109.47362 * 305.89584 * 3 2 1 5 5 C 1.50702 * 109.47334 * 185.89383 * 3 2 1 6 6 H 1.07999 * 120.00013 * 243.26610 * 5 3 2 7 7 C 1.37867 * 119.99770 * 63.26233 * 5 3 2 8 8 N 1.31519 * 119.99923 * 195.95813 * 7 5 3 9 9 Si 1.86801 * 120.00453 * 15.96227 * 7 5 3 10 10 H 1.48500 * 109.47413 * 93.32834 * 9 7 5 11 11 H 1.48501 * 109.47455 * 213.33530 * 9 7 5 12 12 H 1.48505 * 109.46833 * 333.33248 * 9 7 5 13 13 N 1.46902 * 109.47179 * 65.89128 * 3 2 1 14 14 C 1.46901 * 111.00173 * 258.88797 * 13 3 2 15 15 C 1.53003 * 109.46997 * 175.54137 * 14 13 3 16 16 C 1.50702 * 109.46962 * 180.02562 * 15 14 13 17 17 C 1.38250 * 119.95823 * 100.00408 * 16 15 14 18 18 C 1.38131 * 120.08151 * 179.72253 * 17 16 15 19 19 C 1.38770 * 119.99334 * 0.25344 * 18 17 16 20 20 O 1.35894 * 120.04064 * 180.02562 * 19 18 17 21 21 C 1.42901 * 116.99821 * 180.02562 * 20 19 18 22 22 C 1.38671 * 119.91318 * 0.02562 * 19 18 17 23 23 C 1.38377 * 119.92398 * 359.97438 * 22 19 18 24 24 F 1.35103 * 119.99901 * 179.97438 * 23 22 19 25 25 H 1.08993 * 109.47484 * 295.94188 * 1 2 3 26 26 H 1.09007 * 109.46754 * 55.93610 * 1 2 3 27 27 H 1.09000 * 109.47051 * 175.92899 * 1 2 3 28 28 H 1.08994 * 109.47475 * 240.00084 * 2 1 3 29 29 H 1.09004 * 109.46619 * 119.99586 * 2 1 3 30 30 H 0.96999 * 120.00105 * 179.97438 * 8 7 5 31 31 H 1.00901 * 111.00041 * 22.84695 * 13 3 2 32 32 H 1.09001 * 109.46903 * 55.54669 * 14 13 3 33 33 H 1.08993 * 109.47205 * 295.54356 * 14 13 3 34 34 H 1.09007 * 109.47268 * 60.00374 * 15 14 13 35 35 H 1.09001 * 109.47084 * 300.00249 * 15 14 13 36 36 H 1.08001 * 119.95514 * 359.97438 * 17 16 15 37 37 H 1.08002 * 120.00122 * 180.27376 * 18 17 16 38 38 H 1.09003 * 109.46966 * 180.02562 * 21 20 19 39 39 H 1.09002 * 109.47280 * 299.99663 * 21 20 19 40 40 H 1.09003 * 109.47529 * 59.99914 * 21 20 19 41 41 H 1.08003 * 120.03528 * 179.97438 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5931 1.9859 -0.8324 5 6 3.5400 1.4450 -0.1459 6 1 4.1590 1.8378 0.6471 7 6 4.1219 0.9458 -1.2917 8 7 5.4043 0.6544 -1.3046 9 14 3.0890 0.6834 -2.8259 10 1 3.1724 1.8876 -3.6908 11 1 3.5984 -0.4967 -3.5698 12 1 1.6749 0.4504 -2.4367 13 7 1.6699 2.0927 1.2642 14 6 0.4961 2.9582 1.0872 15 6 0.0744 3.5290 2.4426 16 6 -1.1301 4.4164 2.2611 17 6 -2.3928 3.9345 2.5523 18 6 -3.4980 4.7475 2.3923 19 6 -3.3421 6.0479 1.9337 20 8 -4.4287 6.8487 1.7765 21 6 -4.1934 8.1752 1.3000 22 6 -2.0760 6.5291 1.6362 23 6 -0.9713 5.7117 1.7978 24 9 0.2628 6.1788 1.5079 25 1 -0.3634 0.4495 0.9240 26 1 -0.3633 0.5757 -0.8514 27 1 -0.3633 -1.0251 -0.0730 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 5.8137 0.3029 -2.1107 31 1 1.5093 1.4093 1.9889 32 1 -0.3242 2.3763 0.6668 33 1 0.7460 3.7754 0.4106 34 1 0.8947 4.1109 2.8630 35 1 -0.1755 2.7117 3.1192 36 1 -2.5147 2.9225 2.9092 37 1 -4.4834 4.3711 2.6244 38 1 -5.1420 8.7063 1.2204 39 1 -3.5405 8.7011 1.9967 40 1 -3.7183 8.1305 0.3200 41 1 -1.9524 7.5408 1.2788 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255159044.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:36 Heat of formation + Delta-G solvation = -62.949331 kcal Electronic energy + Delta-G solvation = -21855.936433 eV Core-core repulsion = 18457.505141 eV Total energy + Delta-G solvation = -3398.431292 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.88856 -40.30426 -37.98663 -36.77840 -33.55697 -31.97280 -30.91559 -30.66002 -28.48856 -27.50203 -25.94630 -23.04700 -22.85604 -22.06505 -20.99745 -19.82762 -18.66817 -17.20263 -16.67813 -16.17113 -16.13824 -15.67828 -15.37626 -15.02240 -14.78353 -14.60196 -14.13342 -13.99512 -13.41767 -12.95188 -12.91808 -12.76750 -12.59487 -12.31609 -12.01032 -11.81023 -11.62660 -11.47638 -11.32467 -10.98653 -10.84231 -10.78496 -10.56501 -10.31437 -9.91588 -9.41857 -9.27019 -9.08856 -8.35675 -8.24236 -7.28558 -6.01895 -3.92788 0.98583 1.09763 2.92223 3.30707 3.39652 3.40040 3.42636 4.13562 4.47490 4.49634 4.64536 4.70853 4.81021 4.81921 5.02350 5.13643 5.23942 5.27176 5.36952 5.46432 5.66895 5.78655 5.84727 5.86369 5.87609 5.92736 6.00434 6.03870 6.17519 6.36463 6.45596 6.52801 6.56206 6.63240 6.79688 6.91180 7.05331 7.22477 7.81694 7.98913 8.40217 8.77526 9.16232 9.65337 11.11707 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.024945 B = 0.003691 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.185606 B = 7584.890877 C = 7779.020501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.150 4.150 3 C 0.193 3.807 4 H 0.022 0.978 5 C -0.499 4.499 6 H 0.080 0.920 7 C 0.071 3.929 8 N -0.895 5.895 9 Si 0.858 3.142 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.255 1.255 13 N -0.672 5.672 14 C 0.062 3.938 15 C -0.077 4.077 16 C -0.141 4.141 17 C -0.051 4.051 18 C -0.161 4.161 19 C 0.146 3.854 20 O -0.314 6.314 21 C 0.025 3.975 22 C -0.246 4.246 23 C 0.144 3.856 24 F -0.128 7.128 25 H 0.046 0.954 26 H 0.044 0.956 27 H 0.041 0.959 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.262 0.738 31 H 0.326 0.674 32 H 0.025 0.975 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.139 0.861 37 H 0.135 0.865 38 H 0.101 0.899 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.545 10.375 7.162 24.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.189 4.189 3 C 0.085 3.915 4 H 0.040 0.960 5 C -0.537 4.537 6 H 0.098 0.902 7 C -0.131 4.131 8 N -0.534 5.534 9 Si 0.685 3.315 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.179 1.179 13 N -0.301 5.301 14 C -0.068 4.068 15 C -0.114 4.114 16 C -0.143 4.143 17 C -0.069 4.069 18 C -0.180 4.180 19 C 0.100 3.900 20 O -0.227 6.227 21 C -0.070 4.070 22 C -0.265 4.265 23 C 0.125 3.875 24 F -0.106 7.106 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.143 0.857 32 H 0.043 0.957 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.157 0.843 37 H 0.153 0.847 38 H 0.119 0.881 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -20.081 10.808 6.983 23.850 hybrid contribution -0.754 -0.461 -1.311 1.581 sum -20.836 10.347 5.673 23.945 Atomic orbital electron populations 1.21959 0.98543 1.00136 1.00527 1.22609 0.92726 1.01612 1.01949 1.19557 0.96711 0.88141 0.87133 0.95987 1.21006 0.89236 1.39717 1.03741 0.90165 1.24903 0.94734 0.94849 0.98578 1.69981 1.11533 1.43640 1.28197 0.87295 0.82101 0.77759 0.84334 1.20820 1.21456 1.17933 1.60631 1.34259 1.25567 1.09679 1.22038 0.92366 0.97230 0.95159 1.20546 0.94132 0.97876 0.98876 1.19981 0.96834 0.93654 1.03828 1.20782 0.90153 0.99441 0.96515 1.20450 1.00169 0.91562 1.05813 1.18684 0.85126 0.90884 0.95304 1.86083 1.30659 1.24646 1.81341 1.23103 1.03621 0.81181 0.99119 1.21126 0.91636 1.02064 1.11704 1.17258 0.79676 0.92242 0.98354 1.91550 1.39831 1.88649 1.90559 0.93517 0.93668 0.94005 0.92139 0.92352 0.92856 0.85668 0.95687 0.91630 0.89818 0.90881 0.84293 0.84676 0.88074 0.92463 0.92399 0.84363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 8.74 37.16 0.32 -2.35 16 2 C -0.15 -3.18 4.49 -26.73 -0.12 -3.30 16 3 C 0.19 4.55 1.73 -68.86 -0.12 4.43 16 4 H 0.02 0.55 6.36 -51.93 -0.33 0.22 16 5 C -0.50 -14.23 9.29 -34.44 -0.32 -14.55 16 6 H 0.08 2.54 8.06 -52.49 -0.42 2.11 16 7 C 0.07 2.06 5.31 -17.82 -0.09 1.96 16 8 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 9 Si 0.86 21.41 25.75 -169.99 -4.38 17.03 16 10 H -0.28 -7.08 7.11 56.52 0.40 -6.67 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 12 H -0.26 -5.95 5.48 56.52 0.31 -5.64 16 13 N -0.67 -13.66 6.10 -107.95 -0.66 -14.32 16 14 C 0.06 1.07 5.04 -3.82 -0.02 1.05 16 15 C -0.08 -1.07 5.28 -27.88 -0.15 -1.22 16 16 C -0.14 -1.82 5.15 -104.53 -0.54 -2.36 16 17 C -0.05 -0.54 9.66 -39.62 -0.38 -0.93 16 18 C -0.16 -1.66 9.99 -39.42 -0.39 -2.06 16 19 C 0.15 1.60 6.69 -39.22 -0.26 1.34 16 20 O -0.31 -3.13 10.50 -19.41 -0.20 -3.33 16 21 C 0.02 0.16 9.81 101.05 0.99 1.15 16 22 C -0.25 -2.83 9.02 -39.37 -0.35 -3.18 16 23 C 0.14 1.95 7.24 -39.44 -0.29 1.66 16 24 F -0.13 -1.96 16.66 2.25 0.04 -1.92 16 25 H 0.05 0.72 6.50 -51.93 -0.34 0.38 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.06 1.38 4.86 -51.93 -0.25 1.13 16 29 H 0.06 1.21 8.01 -51.93 -0.42 0.80 16 30 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 31 H 0.33 6.04 7.97 -39.29 -0.31 5.73 16 32 H 0.03 0.42 5.97 -51.93 -0.31 0.11 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.08 1.26 7.95 -51.93 -0.41 0.85 16 35 H 0.07 0.88 8.00 -51.93 -0.42 0.47 16 36 H 0.14 1.18 8.03 -52.49 -0.42 0.76 16 37 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.32 7.66 -51.93 -0.40 -0.07 16 40 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 41 H 0.14 1.32 6.30 -52.48 -0.33 0.99 16 LS Contribution 332.36 15.07 5.01 5.01 Total: -1.00 -31.82 332.36 -7.24 -39.06 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -6.10 Total: 3.70 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: -1.72 Total: -18.34 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: 0.11 Total: -41.21 kcal Atomic # 8 Polarization: -3.13 SS G_CDS: -0.20 Total: -3.33 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.38 Total: 17.03 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.82 -7.24 -39.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159044.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.888 kcal (2) G-P(sol) polarization free energy of solvation -31.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds