Wall clock time and date at job start Tue Mar 31 2020 05:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47046 * 2 1 4 4 H 1.09003 * 109.46913 * 183.89907 * 3 2 1 5 5 C 1.50700 * 109.47042 * 303.89968 * 3 2 1 6 6 H 1.08000 * 120.00014 * 115.36533 * 5 3 2 7 7 C 1.37874 * 120.00191 * 295.35546 * 5 3 2 8 8 N 1.31515 * 120.00080 * 354.19681 * 7 5 3 9 9 Si 1.86798 * 119.99986 * 174.19347 * 7 5 3 10 10 H 1.48507 * 109.47056 * 180.02562 * 9 7 5 11 11 H 1.48497 * 109.47560 * 300.00204 * 9 7 5 12 12 H 1.48503 * 109.47387 * 60.00613 * 9 7 5 13 13 N 1.46896 * 109.47135 * 63.90002 * 3 2 1 14 14 C 1.46899 * 110.99857 * 80.80501 * 13 3 2 15 15 C 1.53010 * 109.46868 * 184.83675 * 14 13 3 16 16 C 1.50700 * 109.46889 * 180.02562 * 15 14 13 17 17 C 1.38260 * 119.95611 * 264.72513 * 16 15 14 18 18 C 1.38136 * 120.07725 * 179.76786 * 17 16 15 19 19 C 1.38766 * 119.99309 * 0.53222 * 18 17 16 20 20 O 1.35906 * 120.04129 * 179.70396 * 19 18 17 21 21 C 1.42901 * 116.99637 * 0.02562 * 20 19 18 22 22 C 1.38667 * 119.91889 * 359.71710 * 19 18 17 23 23 C 1.38383 * 119.91869 * 0.02562 * 22 19 18 24 24 F 1.35104 * 119.99581 * 179.97438 * 23 22 19 25 25 H 1.09003 * 109.47338 * 304.86327 * 1 2 3 26 26 H 1.09006 * 109.47483 * 64.86845 * 1 2 3 27 27 H 1.08999 * 109.47210 * 184.86683 * 1 2 3 28 28 H 1.09003 * 109.46846 * 240.00223 * 2 1 3 29 29 H 1.08994 * 109.47484 * 120.00578 * 2 1 3 30 30 H 0.97001 * 120.00049 * 354.16763 * 8 7 5 31 31 H 1.00898 * 111.00085 * 316.85394 * 13 3 2 32 32 H 1.09003 * 109.47152 * 304.83386 * 14 13 3 33 33 H 1.08991 * 109.47653 * 64.83747 * 14 13 3 34 34 H 1.08996 * 109.47254 * 299.99487 * 15 14 13 35 35 H 1.09001 * 109.47023 * 60.00183 * 15 14 13 36 36 H 1.07993 * 119.95810 * 359.97438 * 17 16 15 37 37 H 1.08001 * 120.00092 * 180.25134 * 18 17 16 38 38 H 1.09004 * 109.46753 * 180.02562 * 21 20 19 39 39 H 1.08999 * 109.47057 * 300.00087 * 21 20 19 40 40 H 1.08996 * 109.47506 * 60.00245 * 21 20 19 41 41 H 1.08003 * 120.04244 * 180.02562 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1277 1.4432 -0.0699 5 6 1.4602 2.1802 -1.1793 6 1 0.7873 3.0097 -1.0197 7 6 1.7891 1.7964 -2.4621 8 7 2.6948 0.8630 -2.6574 9 14 0.9481 2.6019 -3.9226 10 1 1.4743 2.0162 -5.1817 11 1 -0.5160 2.3672 -3.8422 12 1 1.2170 4.0623 -3.9052 13 7 1.6287 2.1072 1.2437 14 6 2.5284 1.7561 2.3506 15 6 2.0010 2.3678 3.6502 16 6 2.9243 2.0082 4.7856 17 6 2.6456 0.9124 5.5814 18 6 3.4928 0.5777 6.6198 19 6 4.6191 1.3480 6.8721 20 8 5.4501 1.0230 7.8972 21 6 5.1033 -0.1250 8.6743 22 6 4.8956 2.4499 6.0770 23 6 4.0474 2.7790 5.0343 24 9 4.3151 3.8526 4.2590 25 1 -0.3634 0.5874 0.8432 26 1 -0.3634 0.4365 -0.9304 27 1 -0.3633 -1.0239 0.0872 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.1920 0.5047 -1.9055 31 1 0.6711 1.8864 1.4722 32 1 2.5740 0.6717 2.4518 33 1 3.5260 2.1441 2.1451 34 1 1.9554 3.4521 3.5491 35 1 1.0034 1.9797 3.8557 36 1 1.7664 0.3157 5.3888 37 1 3.2761 -0.2809 7.2382 38 1 5.8472 -0.2718 9.4575 39 1 4.1236 0.0256 9.1278 40 1 5.0745 -1.0042 8.0308 41 1 5.7719 3.0506 6.2712 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255159045.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:39 Heat of formation + Delta-G solvation = -71.267527 kcal Electronic energy + Delta-G solvation = -21723.233533 eV Core-core repulsion = 18324.441538 eV Total energy + Delta-G solvation = -3398.791996 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.89558 -40.32199 -37.94881 -36.78319 -33.80651 -31.81103 -30.97821 -30.22471 -28.19866 -27.04020 -25.18776 -23.53855 -23.06966 -22.47421 -20.91894 -19.48849 -18.66877 -17.14701 -16.74006 -16.18138 -16.15113 -15.64383 -15.42388 -15.10271 -14.69194 -14.01047 -13.94410 -13.69531 -13.57118 -13.00678 -12.89652 -12.81782 -12.54063 -12.48910 -12.09924 -11.65671 -11.37325 -11.26245 -11.03886 -10.87387 -10.84705 -10.73429 -10.18786 -10.04391 -9.99423 -9.82081 -9.04031 -8.57904 -8.30952 -8.22328 -7.28815 -6.25586 -3.94968 0.97627 1.10418 2.85217 3.38931 3.48755 3.50514 3.68908 4.28061 4.48235 4.56311 4.68051 4.70354 4.78567 4.80173 5.08081 5.12840 5.17459 5.36534 5.43555 5.46458 5.67924 5.80347 5.88377 5.94112 6.01730 6.11527 6.14577 6.17353 6.33006 6.41748 6.49347 6.57246 6.70540 7.02053 7.05039 7.09695 7.28718 7.31700 7.95891 8.30795 8.50900 8.68363 8.96897 9.73059 11.10095 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.030604 B = 0.003291 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.702074 B = 8506.237358 C = 8866.373222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.152 4.152 3 C 0.204 3.796 4 H 0.025 0.975 5 C -0.570 4.570 6 H 0.055 0.945 7 C 0.017 3.983 8 N -0.917 5.917 9 Si 1.065 2.935 10 H -0.285 1.285 11 H -0.289 1.289 12 H -0.289 1.289 13 N -0.677 5.677 14 C 0.065 3.935 15 C -0.076 4.076 16 C -0.140 4.140 17 C -0.050 4.050 18 C -0.217 4.217 19 C 0.146 3.854 20 O -0.316 6.316 21 C 0.027 3.973 22 C -0.189 4.189 23 C 0.144 3.856 24 F -0.126 7.126 25 H 0.035 0.965 26 H 0.067 0.933 27 H 0.025 0.975 28 H 0.068 0.932 29 H 0.019 0.981 30 H 0.268 0.732 31 H 0.327 0.673 32 H 0.020 0.980 33 H 0.063 0.937 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.135 0.865 37 H 0.133 0.867 38 H 0.100 0.900 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.388 -2.332 21.722 21.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.192 4.192 3 C 0.096 3.904 4 H 0.043 0.957 5 C -0.608 4.608 6 H 0.073 0.927 7 C -0.186 4.186 8 N -0.554 5.554 9 Si 0.893 3.107 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.215 1.215 13 N -0.308 5.308 14 C -0.065 4.065 15 C -0.114 4.114 16 C -0.142 4.142 17 C -0.068 4.068 18 C -0.236 4.236 19 C 0.100 3.900 20 O -0.229 6.229 21 C -0.068 4.068 22 C -0.208 4.208 23 C 0.125 3.875 24 F -0.104 7.104 25 H 0.054 0.946 26 H 0.086 0.914 27 H 0.045 0.955 28 H 0.087 0.913 29 H 0.038 0.962 30 H 0.079 0.921 31 H 0.146 0.854 32 H 0.038 0.962 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.153 0.847 37 H 0.150 0.850 38 H 0.119 0.881 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.790 -1.646 19.945 20.092 hybrid contribution -0.145 -1.007 1.864 2.123 sum 1.645 -2.653 21.808 22.031 Atomic orbital electron populations 1.21538 0.96810 0.98152 1.01936 1.22215 0.96083 1.01457 0.99468 1.19300 0.95388 0.88374 0.87350 0.95742 1.21843 1.30349 1.17599 0.91053 0.92698 1.25703 0.96721 0.95985 1.00164 1.70792 1.22485 1.26810 1.35346 0.83609 0.75587 0.75621 0.75840 1.21016 1.21576 1.21514 1.60814 1.04851 1.62457 1.02663 1.21879 0.97982 0.96605 0.90028 1.20539 0.96751 1.02595 0.91486 1.19960 0.96911 0.97189 1.00134 1.20742 0.98607 0.94732 0.92708 1.21247 0.96874 1.02871 1.02590 1.18560 0.89594 0.93599 0.88209 1.86062 1.48593 1.46731 1.41499 1.23091 1.02119 0.86700 0.94884 1.20209 1.03077 0.99972 0.97592 1.17147 0.94587 0.85556 0.90250 1.91547 1.93422 1.52397 1.73082 0.94583 0.91361 0.95545 0.91309 0.96193 0.92071 0.85441 0.96218 0.91845 0.89907 0.90992 0.84738 0.84951 0.88117 0.92483 0.92406 0.84023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.64 9.38 37.16 0.35 -2.29 16 2 C -0.15 -3.51 5.46 -26.73 -0.15 -3.66 16 3 C 0.20 5.11 1.95 -68.87 -0.13 4.97 16 4 H 0.02 0.68 7.31 -51.93 -0.38 0.30 16 5 C -0.57 -15.81 7.42 -34.44 -0.26 -16.06 16 6 H 0.05 1.56 7.82 -52.49 -0.41 1.15 16 7 C 0.02 0.49 5.27 -17.82 -0.09 0.40 16 8 N -0.92 -27.36 12.88 55.43 0.71 -26.65 16 9 Si 1.06 25.31 29.91 -169.99 -5.08 20.23 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 13 N -0.68 -14.54 6.25 -107.95 -0.67 -15.21 16 14 C 0.07 1.19 5.49 -3.82 -0.02 1.17 16 15 C -0.08 -1.12 5.33 -27.88 -0.15 -1.27 16 16 C -0.14 -1.89 5.14 -104.53 -0.54 -2.43 16 17 C -0.05 -0.56 9.67 -39.61 -0.38 -0.94 16 18 C -0.22 -2.21 9.04 -39.42 -0.36 -2.57 16 19 C 0.15 1.66 6.68 -39.23 -0.26 1.40 16 20 O -0.32 -3.23 10.50 -19.45 -0.20 -3.43 16 21 C 0.03 0.16 9.81 101.05 0.99 1.16 16 22 C -0.19 -2.35 9.97 -39.37 -0.39 -2.75 16 23 C 0.14 2.02 7.24 -39.44 -0.29 1.73 16 24 F -0.13 -1.96 16.56 2.25 0.04 -1.93 16 25 H 0.04 0.68 6.24 -51.93 -0.32 0.35 16 26 H 0.07 1.56 7.30 -51.93 -0.38 1.18 16 27 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 1.76 6.27 -51.93 -0.33 1.43 16 29 H 0.02 0.42 7.04 -51.93 -0.37 0.05 16 30 H 0.27 7.99 6.04 -40.82 -0.25 7.74 16 31 H 0.33 6.57 6.44 -39.29 -0.25 6.31 16 32 H 0.02 0.36 7.00 -51.93 -0.36 0.00 16 33 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.08 1.29 7.78 -51.93 -0.40 0.89 16 35 H 0.07 0.94 8.05 -51.93 -0.42 0.52 16 36 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 37 H 0.13 0.99 6.30 -52.49 -0.33 0.66 16 38 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 40 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 41 H 0.14 1.58 8.06 -52.48 -0.42 1.16 16 LS Contribution 334.72 15.07 5.04 5.04 Total: -1.00 -30.91 334.72 -7.75 -38.66 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -5.91 Total: 4.44 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: -1.68 Total: -21.15 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 0.04 Total: -41.86 kcal Atomic # 8 Polarization: -3.23 SS G_CDS: -0.20 Total: -3.43 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.93 kcal Atomic # 14 Polarization: 25.31 SS G_CDS: -5.08 Total: 20.23 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.91 -7.75 -38.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159045.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.610 kcal (2) G-P(sol) polarization free energy of solvation -30.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds