Wall clock time and date at job start Tue Mar 31 2020 05:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.47099 * 2 1 4 4 H 1.08998 * 109.46756 * 303.02842 * 3 2 1 5 5 C 1.50701 * 109.46996 * 183.02544 * 3 2 1 6 6 H 1.07994 * 119.99811 * 240.00076 * 5 3 2 7 7 C 1.37878 * 119.99897 * 60.00448 * 5 3 2 8 8 N 1.31513 * 120.00186 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99639 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47265 * 89.99958 * 9 7 5 11 11 H 1.48501 * 109.46626 * 209.99822 * 9 7 5 12 12 H 1.48498 * 109.47152 * 329.99536 * 9 7 5 13 13 N 1.46892 * 109.46718 * 63.02388 * 3 2 1 14 14 C 1.46905 * 110.99957 * 209.59486 * 13 3 2 15 15 H 1.08999 * 109.47063 * 30.54838 * 14 13 3 16 16 C 1.53002 * 109.46847 * 270.54956 * 14 13 3 17 17 C 1.50699 * 109.47023 * 150.55076 * 14 13 3 18 18 C 1.38221 * 120.01878 * 25.91839 * 17 14 13 19 19 C 1.38220 * 120.09509 * 179.79299 * 18 17 14 20 20 C 1.38300 * 120.12660 * 0.46567 * 19 18 17 21 21 C 1.38292 * 120.02668 * 359.78901 * 20 19 18 22 22 F 1.35101 * 120.04283 * 179.97438 * 21 20 19 23 23 C 1.38624 * 120.01051 * 206.19862 * 17 14 13 24 24 O 1.35954 * 120.06656 * 359.97438 * 23 17 14 25 25 C 1.42893 * 117.00003 * 95.14844 * 24 23 17 26 26 H 1.08999 * 109.46795 * 174.97897 * 1 2 3 27 27 H 1.09006 * 109.47347 * 54.98417 * 1 2 3 28 28 H 1.08990 * 109.47186 * 294.98359 * 1 2 3 29 29 H 1.08996 * 109.47561 * 120.00260 * 2 1 3 30 30 H 1.09003 * 109.47118 * 240.00120 * 2 1 3 31 31 H 0.97002 * 119.99805 * 180.02562 * 8 7 5 32 32 H 1.00901 * 111.00051 * 85.64166 * 13 3 2 33 33 H 1.08999 * 109.47192 * 299.99803 * 16 14 13 34 34 H 1.08989 * 109.47221 * 60.00054 * 16 14 13 35 35 H 1.08998 * 109.46718 * 180.02562 * 16 14 13 36 36 H 1.08003 * 119.95393 * 0.02630 * 18 17 14 37 37 H 1.08002 * 119.93734 * 180.25807 * 19 18 17 38 38 H 1.07995 * 119.98551 * 179.77127 * 20 19 18 39 39 H 1.09000 * 109.47090 * 65.01559 * 25 24 23 40 40 H 1.09001 * 109.47279 * 185.00767 * 25 24 23 41 41 H 1.09001 * 109.47716 * 305.01433 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6330 1.9718 -0.8616 5 6 3.5452 1.4432 -0.0750 6 1 4.1249 1.8967 0.7152 7 6 4.1819 0.8648 -1.1525 8 7 3.4759 0.3121 -2.1146 9 14 6.0477 0.8650 -1.2450 10 1 6.5758 -0.3597 -0.5922 11 1 6.4726 0.8901 -2.6677 12 1 6.5777 2.0649 -0.5489 13 7 1.6109 2.1135 1.2343 14 6 1.4327 3.5552 1.0152 15 1 1.1250 3.7307 -0.0156 16 6 2.7539 4.2788 1.2833 17 6 0.3743 4.0785 1.9515 18 6 0.1269 3.4304 3.1470 19 6 -0.8406 3.9115 4.0090 20 6 -1.5709 5.0372 3.6741 21 6 -1.3312 5.6867 2.4769 22 9 -2.0447 6.7861 2.1492 23 6 -0.3556 5.2070 1.6116 24 8 -0.1174 5.8430 0.4339 25 6 -0.9499 5.4918 -0.6731 26 1 -0.3633 -1.0237 -0.0899 27 1 -0.3634 0.5897 -0.8417 28 1 -0.3633 0.4340 0.9314 29 1 1.8934 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.9239 -0.0951 -2.8724 32 1 2.2617 1.9396 1.9854 33 1 3.0617 4.1033 2.3140 34 1 3.5194 3.9003 0.6061 35 1 2.6216 5.3485 1.1211 36 1 0.6929 2.5488 3.4097 37 1 -1.0290 3.4054 4.9443 38 1 -2.3288 5.4090 4.3476 39 1 -1.9774 5.7897 -0.4639 40 1 -0.5985 6.0038 -1.5689 41 1 -0.9092 4.4140 -0.8309 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255164965.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:23 Heat of formation + Delta-G solvation = -65.722488 kcal Electronic energy + Delta-G solvation = -22883.225377 eV Core-core repulsion = 19484.673832 eV Total energy + Delta-G solvation = -3398.551545 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.76800 -39.85588 -37.30934 -36.50858 -33.58745 -31.59794 -30.06590 -29.83010 -28.11723 -26.74264 -26.08157 -23.49289 -22.79907 -22.13401 -20.30805 -19.57167 -17.78123 -16.82139 -16.76903 -16.38962 -15.91843 -14.93765 -14.89524 -14.69323 -14.39374 -14.16864 -13.89857 -13.46682 -12.98989 -12.65430 -12.64524 -12.30721 -12.11013 -11.89537 -11.76243 -11.41190 -11.32908 -11.14620 -11.07405 -10.84226 -10.69624 -10.44340 -10.16159 -9.91113 -9.61557 -9.49562 -9.06914 -8.51390 -8.46074 -8.41170 -7.37001 -6.03817 -4.15644 1.17872 1.33005 3.24663 3.32471 3.34488 3.48134 3.97405 4.28040 4.36917 4.79226 5.10089 5.18206 5.24708 5.33340 5.42600 5.49218 5.55100 5.62782 5.71613 5.84887 6.01469 6.08690 6.17654 6.31605 6.36149 6.44170 6.47556 6.56710 6.67544 6.75524 6.83442 6.90670 7.09011 7.13642 7.41125 7.54246 7.59026 7.74511 8.04469 8.08005 8.27620 8.58572 8.95911 9.51833 10.97048 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.022020 B = 0.004890 C = 0.004718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.249901 B = 5724.289796 C = 5933.547658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.106 4.106 3 C 0.218 3.782 4 H 0.030 0.970 5 C -0.543 4.543 6 H 0.057 0.943 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.887 3.113 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.683 5.683 14 C 0.132 3.868 15 H 0.083 0.917 16 C -0.169 4.169 17 C -0.042 4.042 18 C -0.092 4.092 19 C -0.102 4.102 20 C -0.158 4.158 21 C 0.070 3.930 22 F -0.140 7.140 23 C 0.058 3.942 24 O -0.326 6.326 25 C 0.033 3.967 26 H 0.024 0.976 27 H 0.034 0.966 28 H 0.046 0.954 29 H 0.031 0.969 30 H 0.089 0.911 31 H 0.261 0.739 32 H 0.331 0.669 33 H 0.047 0.953 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.141 0.859 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.043 0.957 40 H 0.095 0.905 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.609 7.059 8.062 13.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.144 4.144 3 C 0.110 3.890 4 H 0.048 0.952 5 C -0.582 4.582 6 H 0.075 0.925 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.715 3.285 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.312 5.312 14 C 0.021 3.979 15 H 0.101 0.899 16 C -0.228 4.228 17 C -0.044 4.044 18 C -0.111 4.111 19 C -0.120 4.120 20 C -0.176 4.176 21 C 0.050 3.950 22 F -0.119 7.119 23 C 0.013 3.987 24 O -0.243 6.243 25 C -0.061 4.061 26 H 0.043 0.957 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.108 0.892 31 H 0.071 0.929 32 H 0.148 0.852 33 H 0.066 0.934 34 H 0.100 0.900 35 H 0.068 0.932 36 H 0.158 0.842 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.061 0.939 40 H 0.113 0.887 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.154 6.980 7.704 13.851 hybrid contribution 1.606 0.356 -0.297 1.671 sum -7.548 7.336 7.407 12.870 Atomic orbital electron populations 1.21686 0.99096 0.98220 1.00305 1.21506 0.91934 0.99235 1.01740 1.19203 0.92744 0.91019 0.86005 0.95172 1.21865 0.92402 1.37620 1.06307 0.92467 1.24923 0.97921 0.94981 0.95627 1.69875 1.34979 1.37633 1.09802 0.86681 0.86193 0.78407 0.77217 1.20682 1.21273 1.20032 1.60931 1.53200 1.06443 1.10626 1.20213 0.91368 0.89582 0.96717 0.89920 1.22452 0.98398 1.00155 1.01757 1.20424 0.96486 0.91217 0.96254 1.21069 0.97628 0.99721 0.92642 1.21047 0.95750 0.95347 0.99830 1.20964 1.02830 0.97914 0.95940 1.18084 0.93789 0.86782 0.96296 1.91454 1.76674 1.50912 1.92852 1.18541 0.97136 0.94887 0.88130 1.86071 1.58255 1.63203 1.16752 1.23029 0.93936 1.01160 0.87991 0.95725 0.94672 0.93445 0.94990 0.89235 0.92885 0.85199 0.93413 0.90015 0.93217 0.84152 0.85150 0.85040 0.93859 0.88682 0.92816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.72 37.16 0.36 -2.33 16 2 C -0.11 -2.41 5.44 -26.73 -0.15 -2.55 16 3 C 0.22 5.04 2.02 -68.86 -0.14 4.90 16 4 H 0.03 0.79 7.29 -51.93 -0.38 0.41 16 5 C -0.54 -13.69 7.33 -34.44 -0.25 -13.94 16 6 H 0.06 1.42 6.89 -52.49 -0.36 1.06 16 7 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 8 N -0.88 -24.16 11.30 55.43 0.63 -23.54 16 9 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 13 N -0.68 -13.09 4.45 -102.17 -0.45 -13.55 16 14 C 0.13 2.38 2.56 -68.86 -0.18 2.20 16 15 H 0.08 1.65 6.21 -51.93 -0.32 1.33 16 16 C -0.17 -2.98 8.89 37.16 0.33 -2.65 16 17 C -0.04 -0.68 5.06 -104.49 -0.53 -1.21 16 18 C -0.09 -1.30 9.32 -39.59 -0.37 -1.67 16 19 C -0.10 -1.21 10.04 -39.57 -0.40 -1.61 16 20 C -0.16 -1.96 10.02 -39.54 -0.40 -2.35 16 21 C 0.07 1.04 7.31 -39.30 -0.29 0.76 16 22 F -0.14 -2.13 17.11 2.25 0.04 -2.09 16 23 C 0.06 0.94 5.70 -39.18 -0.22 0.71 16 24 O -0.33 -5.36 9.45 -19.60 -0.19 -5.55 16 25 C 0.03 0.45 10.86 101.05 1.10 1.55 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.89 7.84 -51.93 -0.41 0.49 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.09 2.31 5.99 -51.93 -0.31 2.00 16 31 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 32 H 0.33 6.23 7.61 -39.29 -0.30 5.93 16 33 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 34 H 0.08 1.63 6.31 -51.94 -0.33 1.30 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.14 1.91 7.04 -52.48 -0.37 1.54 16 37 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 38 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 39 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.05 0.76 7.80 -51.93 -0.41 0.35 16 LS Contribution 337.12 15.07 5.08 5.08 Total: -1.00 -26.99 337.12 -7.26 -34.25 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -6.12 Total: 6.42 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: -1.22 Total: -16.51 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.17 Total: -37.08 kcal Atomic # 8 Polarization: -5.36 SS G_CDS: -0.19 Total: -5.55 kcal Atomic # 9 Polarization: -2.13 SS G_CDS: 0.04 Total: -2.09 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -26.99 -7.26 -34.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164965.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.474 kcal (2) G-P(sol) polarization free energy of solvation -26.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds