Wall clock time and date at job start Tue Mar 31 2020 05:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47165 * 2 1 4 4 H 1.09001 * 109.46698 * 54.36894 * 3 2 1 5 5 C 1.50697 * 109.46823 * 174.36906 * 3 2 1 6 6 H 1.08005 * 120.00059 * 120.00177 * 5 3 2 7 7 C 1.37878 * 120.00193 * 300.00031 * 5 3 2 8 8 N 1.31519 * 119.99940 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00423 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47187 * 89.99793 * 9 7 5 11 11 H 1.48493 * 109.47119 * 210.00257 * 9 7 5 12 12 H 1.48502 * 109.46859 * 329.99955 * 9 7 5 13 13 N 1.46896 * 109.47340 * 294.36875 * 3 2 1 14 14 C 1.46894 * 111.00303 * 155.54739 * 13 3 2 15 15 H 1.09005 * 109.46989 * 32.89459 * 14 13 3 16 16 C 1.53006 * 109.47067 * 272.89985 * 14 13 3 17 17 C 1.50700 * 109.47628 * 152.89731 * 14 13 3 18 18 C 1.38228 * 120.01253 * 24.99481 * 17 14 13 19 19 C 1.38211 * 120.09255 * 179.97438 * 18 17 14 20 20 C 1.38303 * 120.13244 * 0.02562 * 19 18 17 21 21 C 1.38294 * 120.02220 * 359.97438 * 20 19 18 22 22 F 1.35098 * 120.04241 * 180.02562 * 21 20 19 23 23 C 1.38611 * 120.01804 * 204.98178 * 17 14 13 24 24 O 1.35955 * 120.06160 * 0.03747 * 23 17 14 25 25 C 1.42905 * 117.00023 * 90.00543 * 24 23 17 26 26 H 1.09005 * 109.46797 * 305.73949 * 1 2 3 27 27 H 1.09006 * 109.47007 * 65.73660 * 1 2 3 28 28 H 1.08995 * 109.47565 * 185.74400 * 1 2 3 29 29 H 1.09002 * 109.46732 * 240.00391 * 2 1 3 30 30 H 1.08998 * 109.47089 * 120.00520 * 2 1 3 31 31 H 0.97004 * 120.00030 * 180.02562 * 8 7 5 32 32 H 1.00899 * 110.99989 * 31.59256 * 13 3 2 33 33 H 1.08997 * 109.46529 * 295.45188 * 16 14 13 34 34 H 1.08995 * 109.46972 * 55.45810 * 16 14 13 35 35 H 1.09004 * 109.47146 * 175.45711 * 16 14 13 36 36 H 1.07995 * 119.95038 * 359.71422 * 18 17 14 37 37 H 1.08006 * 119.93499 * 179.97438 * 19 18 17 38 38 H 1.07998 * 119.99052 * 179.97438 * 20 19 18 39 39 H 1.09005 * 109.46863 * 300.00149 * 25 24 23 40 40 H 1.09005 * 109.47296 * 59.99712 * 25 24 23 41 41 H 1.08995 * 109.46985 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5967 1.9846 0.8353 5 6 3.5406 1.4447 0.1394 6 1 4.1539 1.8865 -0.6320 7 6 4.1304 0.8828 1.2518 8 7 3.3836 0.3445 2.1910 9 14 5.9904 0.8862 1.4250 10 1 6.4199 2.1216 2.1281 11 1 6.4168 -0.3021 2.2069 12 1 6.6131 0.8416 0.0776 13 7 1.6645 2.0947 -1.2615 14 6 1.5966 3.5532 -1.1004 15 1 2.3398 3.8730 -0.3698 16 6 0.2007 3.9482 -0.6142 17 6 1.8745 4.2184 -2.4238 18 6 1.6322 3.5395 -3.6032 19 6 1.8860 4.1482 -4.8179 20 6 2.3836 5.4380 -4.8576 21 6 2.6278 6.1220 -3.6807 22 9 3.1134 7.3821 -3.7190 23 6 2.3729 5.5113 -2.4589 24 8 2.6124 6.1806 -1.2999 25 6 3.9148 6.0426 -0.7282 26 1 -0.3633 0.6003 0.8342 27 1 -0.3633 0.4223 -0.9369 28 1 -0.3634 -1.0224 0.1028 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 3.7985 -0.0505 2.9738 32 1 0.7921 1.7287 -1.6121 33 1 -0.5342 3.7012 -1.3804 34 1 -0.0323 3.4048 0.3015 35 1 0.1742 5.0200 -0.4175 36 1 1.2481 2.5306 -3.5755 37 1 1.6961 3.6153 -5.7379 38 1 2.5814 5.9113 -5.8079 39 1 4.1040 4.9926 -0.5047 40 1 4.6620 6.4039 -1.4349 41 1 3.9720 6.6262 0.1905 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255164967.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:26 Heat of formation + Delta-G solvation = -63.304515 kcal Electronic energy + Delta-G solvation = -22952.466544 eV Core-core repulsion = 19554.019851 eV Total energy + Delta-G solvation = -3398.446693 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.71251 -39.83188 -37.26389 -36.59925 -33.62873 -31.68734 -29.96174 -29.74156 -28.31486 -26.64082 -26.14223 -23.65327 -22.79331 -22.12149 -20.28652 -19.62308 -17.70129 -16.81198 -16.58874 -16.20129 -15.85631 -14.95684 -14.84898 -14.70980 -14.39294 -14.25937 -13.96739 -13.55503 -12.97862 -12.85297 -12.58584 -12.50095 -12.13003 -11.93407 -11.72251 -11.62280 -11.32637 -11.19381 -11.08832 -10.88079 -10.69274 -10.44179 -9.99751 -9.87156 -9.69901 -9.59309 -9.12952 -8.48260 -8.41836 -8.39133 -7.31727 -6.00558 -4.04803 1.22413 1.36718 3.28189 3.35872 3.40026 3.52380 4.04684 4.32135 4.41801 4.82090 5.12807 5.19393 5.29146 5.38094 5.49501 5.52597 5.62271 5.66472 5.72410 5.80550 5.98771 6.03089 6.12706 6.13981 6.18977 6.29896 6.34789 6.42996 6.48198 6.58915 6.77883 6.82979 6.88201 7.05914 7.13976 7.46864 7.65191 7.74289 7.87666 8.23402 8.35096 8.69672 9.03040 9.60372 11.04660 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016251 B = 0.005991 C = 0.005064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.603795 B = 4672.611451 C = 5528.149206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.220 3.780 4 H 0.005 0.995 5 C -0.494 4.494 6 H 0.060 0.940 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.891 3.109 10 H -0.283 1.283 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.680 5.680 14 C 0.127 3.873 15 H 0.097 0.903 16 C -0.170 4.170 17 C -0.042 4.042 18 C -0.093 4.093 19 C -0.102 4.102 20 C -0.157 4.157 21 C 0.073 3.927 22 F -0.140 7.140 23 C 0.060 3.940 24 O -0.329 6.329 25 C 0.030 3.970 26 H 0.042 0.958 27 H 0.035 0.965 28 H 0.037 0.963 29 H 0.041 0.959 30 H 0.099 0.901 31 H 0.259 0.741 32 H 0.319 0.681 33 H 0.050 0.950 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.139 0.861 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.062 0.938 40 H 0.042 0.958 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.179 7.394 -9.594 12.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C 0.113 3.887 4 H 0.022 0.978 5 C -0.533 4.533 6 H 0.078 0.922 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.719 3.281 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.310 5.310 14 C 0.016 3.984 15 H 0.115 0.885 16 C -0.229 4.229 17 C -0.043 4.043 18 C -0.111 4.111 19 C -0.120 4.120 20 C -0.176 4.176 21 C 0.053 3.947 22 F -0.118 7.118 23 C 0.015 3.985 24 O -0.245 6.245 25 C -0.064 4.064 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.118 0.882 31 H 0.069 0.931 32 H 0.137 0.863 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.157 0.843 37 H 0.148 0.852 38 H 0.150 0.850 39 H 0.081 0.919 40 H 0.060 0.940 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.600 7.449 -9.536 12.625 hybrid contribution 0.552 0.200 0.583 0.827 sum -3.048 7.649 -8.953 12.164 Atomic orbital electron populations 1.21886 0.99579 0.99733 0.99539 1.21763 0.91225 1.00285 1.03114 1.19169 0.95379 0.89946 0.84172 0.97780 1.21188 0.91255 1.36641 1.04173 0.92207 1.24936 0.97925 0.95626 0.95891 1.69867 1.34643 1.39388 1.09535 0.86610 0.85988 0.77432 0.78067 1.20882 1.21309 1.19923 1.60788 1.35561 1.01208 1.33476 1.20269 0.96569 0.89729 0.91811 0.88546 1.22410 0.97216 1.01991 1.01234 1.20348 0.95735 0.90967 0.97281 1.21047 0.99131 1.00367 0.90575 1.21028 0.98598 0.93861 0.98492 1.20961 1.03979 0.96137 0.96544 1.18045 1.01659 0.80864 0.94126 1.91453 1.85739 1.37324 1.97328 1.18522 1.03254 0.92016 0.84700 1.86038 1.33021 1.69369 1.36105 1.23087 0.82450 1.02911 0.97941 0.93872 0.94617 0.94411 0.94030 0.88233 0.93056 0.86349 0.93140 0.92011 0.92304 0.84287 0.85156 0.85017 0.91928 0.93956 0.88767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 9.64 37.16 0.36 -2.39 16 2 C -0.13 -2.81 5.37 -26.73 -0.14 -2.95 16 3 C 0.22 5.16 1.83 -68.87 -0.13 5.04 16 4 H 0.00 0.12 7.26 -51.93 -0.38 -0.26 16 5 C -0.49 -13.04 8.48 -34.44 -0.29 -13.33 16 6 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 7 C 0.06 1.52 5.29 -17.82 -0.09 1.43 16 8 N -0.89 -24.70 11.29 55.43 0.63 -24.08 16 9 Si 0.89 21.00 29.54 -169.99 -5.02 15.97 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 13 N -0.68 -13.33 5.00 -102.17 -0.51 -13.84 16 14 C 0.13 2.32 2.32 -68.87 -0.16 2.16 16 15 H 0.10 2.02 5.88 -51.93 -0.31 1.72 16 16 C -0.17 -2.76 9.14 37.16 0.34 -2.42 16 17 C -0.04 -0.70 5.07 -104.49 -0.53 -1.23 16 18 C -0.09 -1.36 9.32 -39.60 -0.37 -1.73 16 19 C -0.10 -1.27 10.04 -39.57 -0.40 -1.66 16 20 C -0.16 -2.04 10.02 -39.54 -0.40 -2.44 16 21 C 0.07 1.13 7.31 -39.30 -0.29 0.84 16 22 F -0.14 -2.21 17.11 2.25 0.04 -2.17 16 23 C 0.06 1.01 5.70 -39.18 -0.22 0.79 16 24 O -0.33 -5.63 9.55 -19.60 -0.19 -5.82 16 25 C 0.03 0.46 10.80 101.05 1.09 1.55 16 26 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.03 0.58 6.65 -51.93 -0.35 0.23 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.10 2.54 5.94 -51.93 -0.31 2.24 16 31 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 32 H 0.32 5.64 5.85 -39.29 -0.23 5.41 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 1.05 7.54 -51.93 -0.39 0.66 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.14 1.95 6.95 -52.49 -0.36 1.59 16 37 H 0.13 1.23 8.06 -52.48 -0.42 0.80 16 38 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 39 H 0.06 1.05 7.18 -51.93 -0.37 0.68 16 40 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 LS Contribution 336.61 15.07 5.07 5.07 Total: -1.00 -27.93 336.61 -7.26 -35.19 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -6.04 Total: 6.03 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: -1.23 Total: -16.36 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: 0.12 Total: -37.92 kcal Atomic # 8 Polarization: -5.63 SS G_CDS: -0.19 Total: -5.82 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.04 Total: -2.17 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -27.93 -7.26 -35.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164967.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.116 kcal (2) G-P(sol) polarization free energy of solvation -27.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds