Wall clock time and date at job start Tue Mar 31 2020 05:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47277 * 2 1 4 4 H 1.08991 * 109.47541 * 183.79755 * 3 2 1 5 5 C 1.50702 * 109.47223 * 303.79729 * 3 2 1 6 6 H 1.08003 * 120.00030 * 119.99792 * 5 3 2 7 7 C 1.37874 * 120.00185 * 300.00089 * 5 3 2 8 8 N 1.31520 * 119.99637 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00324 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47043 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47178 * 120.00080 * 9 7 5 12 12 H 1.48498 * 109.46963 * 239.99974 * 9 7 5 13 13 N 1.46903 * 109.47071 * 63.79700 * 3 2 1 14 14 C 1.46894 * 111.00121 * 84.90782 * 13 3 2 15 15 H 1.09006 * 109.47010 * 324.58383 * 14 13 3 16 16 C 1.53003 * 109.47047 * 84.58239 * 14 13 3 17 17 C 1.50700 * 109.47095 * 204.58260 * 14 13 3 18 18 C 1.38219 * 120.01612 * 256.67627 * 17 14 13 19 19 C 1.38222 * 120.09728 * 180.02562 * 18 17 14 20 20 C 1.38291 * 120.12390 * 359.95543 * 19 18 17 21 21 C 1.38295 * 120.03283 * 0.02562 * 20 19 18 22 22 F 1.35096 * 120.04974 * 180.02562 * 21 20 19 23 23 C 1.38614 * 120.01374 * 76.40768 * 17 14 13 24 24 O 1.35953 * 120.06767 * 359.97438 * 23 17 14 25 25 C 1.42894 * 117.00457 * 94.73608 * 24 23 17 26 26 H 1.09000 * 109.46743 * 54.25503 * 1 2 3 27 27 H 1.09000 * 109.47500 * 294.25541 * 1 2 3 28 28 H 1.09002 * 109.47303 * 174.24941 * 1 2 3 29 29 H 1.08999 * 109.46688 * 120.00138 * 2 1 3 30 30 H 1.08997 * 109.46803 * 239.99865 * 2 1 3 31 31 H 0.96996 * 119.99839 * 180.02562 * 8 7 5 32 32 H 1.00897 * 111.00122 * 320.95012 * 13 3 2 33 33 H 1.09004 * 109.47029 * 174.18574 * 16 14 13 34 34 H 1.09003 * 109.47111 * 294.17950 * 16 14 13 35 35 H 1.08999 * 109.47028 * 54.18346 * 16 14 13 36 36 H 1.08003 * 119.95273 * 0.02562 * 18 17 14 37 37 H 1.08003 * 119.93717 * 179.97438 * 19 18 17 38 38 H 1.08002 * 119.99024 * 180.02562 * 20 19 18 39 39 H 1.08996 * 109.46944 * 65.03569 * 25 24 23 40 40 H 1.08998 * 109.47530 * 185.04030 * 25 24 23 41 41 H 1.09005 * 109.47231 * 305.03732 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1278 1.4432 -0.0681 5 6 1.4624 2.1795 -1.1807 6 1 0.8495 3.0548 -1.0237 7 6 1.7162 1.7365 -2.4614 8 7 2.4630 0.6709 -2.6526 9 14 1.0008 2.6505 -3.9250 10 1 0.2035 3.8074 -3.4445 11 1 2.1037 3.1353 -4.7932 12 1 0.1260 1.7351 -4.7008 13 7 1.6267 2.1079 1.2427 14 6 2.5789 1.8357 2.3276 15 1 2.9618 0.8199 2.2285 16 6 3.7403 2.8285 2.2479 17 6 1.8825 1.9827 3.6559 18 6 2.0885 3.1138 4.4231 19 6 1.4510 3.2502 5.6419 20 6 0.6044 2.2562 6.0974 21 6 0.3942 1.1224 5.3339 22 9 -0.4332 0.1514 5.7783 23 6 1.0307 0.9863 4.1063 24 8 0.8219 -0.1244 3.3505 25 6 1.6321 -1.2660 3.6373 26 1 -0.3633 0.6004 -0.8341 27 1 -0.3634 0.4222 0.9369 28 1 -0.3634 -1.0225 -0.1030 29 1 1.8933 -0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 2.6419 0.3594 -3.5536 32 1 0.6916 1.8349 1.5053 33 1 4.3928 2.6944 3.1107 34 1 4.3066 2.6526 1.3333 35 1 3.3489 3.8458 2.2430 36 1 2.7486 3.8923 4.0697 37 1 1.6142 4.1350 6.2395 38 1 0.1071 2.3652 7.0499 39 1 1.4023 -1.6325 4.6377 40 1 1.4276 -2.0494 2.9075 41 1 2.6845 -0.9870 3.5854 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255164968.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:28 Heat of formation + Delta-G solvation = -60.114032 kcal Electronic energy + Delta-G solvation = -23234.141553 eV Core-core repulsion = 19835.833209 eV Total energy + Delta-G solvation = -3398.308344 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.83529 -40.02847 -37.33251 -36.62195 -33.71952 -31.44082 -30.11557 -29.63486 -28.06806 -26.75602 -26.06422 -23.79049 -23.03547 -22.22699 -20.45185 -18.92666 -17.94270 -16.89167 -16.88057 -15.99303 -15.92860 -15.06266 -14.95631 -14.83800 -14.66345 -14.39758 -13.92010 -13.39596 -12.88872 -12.72825 -12.49129 -12.38005 -12.17246 -11.99343 -11.74801 -11.49835 -11.26351 -11.22108 -10.92591 -10.79466 -10.49341 -10.40360 -9.94081 -9.83136 -9.71402 -9.43320 -8.87477 -8.75360 -8.57712 -8.28531 -7.14280 -5.92549 -3.93346 1.05852 1.16792 3.34561 3.37967 3.42745 3.48101 3.83605 4.22475 4.49188 4.69478 4.90723 5.16028 5.21677 5.33009 5.38556 5.39364 5.40187 5.51502 5.66959 5.75387 5.89101 5.98530 6.07795 6.22968 6.29198 6.38107 6.48929 6.54338 6.60122 6.69624 6.70775 6.80017 7.10020 7.36106 7.40476 7.53792 7.62716 7.80541 7.95165 8.35816 8.62129 8.69069 9.12635 9.70023 11.14403 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.023338 B = 0.005214 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.461350 B = 5369.234612 C = 5857.275281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.140 4.140 3 C 0.216 3.784 4 H 0.032 0.968 5 C -0.484 4.484 6 H 0.061 0.939 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.287 1.287 13 N -0.670 5.670 14 C 0.125 3.875 15 H 0.047 0.953 16 C -0.138 4.138 17 C -0.060 4.060 18 C -0.106 4.106 19 C -0.099 4.099 20 C -0.153 4.153 21 C 0.074 3.926 22 F -0.137 7.137 23 C 0.065 3.935 24 O -0.316 6.316 25 C 0.037 3.963 26 H 0.063 0.937 27 H 0.032 0.968 28 H 0.020 0.980 29 H 0.013 0.987 30 H 0.088 0.912 31 H 0.257 0.743 32 H 0.333 0.667 33 H 0.045 0.955 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.140 0.860 37 H 0.133 0.867 38 H 0.134 0.866 39 H 0.042 0.958 40 H 0.097 0.903 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.328 0.556 16.391 16.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.180 4.180 3 C 0.109 3.891 4 H 0.050 0.950 5 C -0.523 4.523 6 H 0.079 0.921 7 C -0.143 4.143 8 N -0.537 5.537 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.213 1.213 13 N -0.301 5.301 14 C 0.015 3.985 15 H 0.065 0.935 16 C -0.196 4.196 17 C -0.061 4.061 18 C -0.125 4.125 19 C -0.117 4.117 20 C -0.172 4.172 21 C 0.054 3.946 22 F -0.116 7.116 23 C 0.020 3.980 24 O -0.232 6.232 25 C -0.058 4.058 26 H 0.082 0.918 27 H 0.051 0.949 28 H 0.039 0.961 29 H 0.032 0.968 30 H 0.107 0.893 31 H 0.067 0.933 32 H 0.153 0.847 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.158 0.842 37 H 0.151 0.849 38 H 0.152 0.848 39 H 0.061 0.939 40 H 0.115 0.885 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.532 0.982 15.920 15.959 hybrid contribution -0.656 -0.860 -0.396 1.152 sum -0.124 0.122 15.524 15.525 Atomic orbital electron populations 1.21552 0.97738 0.98492 1.00671 1.22036 0.95003 1.00950 0.99986 1.19248 0.95628 0.88690 0.85579 0.95028 1.21098 1.30318 1.11330 0.89564 0.92078 1.24893 0.95585 0.95167 0.98702 1.69896 1.38815 1.23838 1.21111 0.86542 0.78820 0.79854 0.82800 1.19798 1.21283 1.21315 1.61129 1.04025 1.62500 1.02490 1.20303 0.93628 0.97762 0.86833 0.93532 1.21880 0.96842 0.99889 1.01009 1.20480 0.94766 0.93549 0.97303 1.21214 1.00154 0.97325 0.93795 1.21024 0.96054 0.98319 0.96321 1.21012 1.01869 0.93476 1.00868 1.18135 0.94540 0.88214 0.93682 1.91471 1.69512 1.61487 1.89104 1.18645 0.98750 0.90366 0.90283 1.86177 1.60381 1.19729 1.56949 1.22995 0.94457 0.87178 1.01123 0.91806 0.94870 0.96090 0.96849 0.89320 0.93296 0.84740 0.93598 0.91889 0.91778 0.84249 0.84949 0.84808 0.93906 0.88471 0.93441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 9.39 37.16 0.35 -2.48 16 2 C -0.14 -3.30 5.51 -26.73 -0.15 -3.44 16 3 C 0.22 5.28 2.14 -68.87 -0.15 5.13 16 4 H 0.03 0.85 7.14 -51.93 -0.37 0.48 16 5 C -0.48 -13.08 7.30 -34.44 -0.25 -13.33 16 6 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 7 C 0.06 1.55 5.30 -17.82 -0.09 1.45 16 8 N -0.90 -25.26 11.36 55.43 0.63 -24.63 16 9 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 N -0.67 -14.15 6.03 -102.17 -0.62 -14.77 16 14 C 0.12 2.20 2.27 -68.87 -0.16 2.04 16 15 H 0.05 0.88 6.30 -51.93 -0.33 0.55 16 16 C -0.14 -2.19 8.10 37.16 0.30 -1.89 16 17 C -0.06 -0.93 5.13 -104.49 -0.54 -1.46 16 18 C -0.11 -1.36 9.02 -39.59 -0.36 -1.72 16 19 C -0.10 -1.07 10.04 -39.57 -0.40 -1.47 16 20 C -0.15 -1.79 10.02 -39.54 -0.40 -2.19 16 21 C 0.07 1.07 7.31 -39.29 -0.29 0.78 16 22 F -0.14 -2.06 17.11 2.25 0.04 -2.02 16 23 C 0.06 1.03 5.46 -39.18 -0.21 0.82 16 24 O -0.32 -5.32 9.45 -19.59 -0.19 -5.51 16 25 C 0.04 0.50 10.78 101.05 1.09 1.59 16 26 H 0.06 1.54 6.89 -51.93 -0.36 1.18 16 27 H 0.03 0.70 6.62 -51.93 -0.34 0.35 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.01 0.28 7.16 -51.93 -0.37 -0.09 16 30 H 0.09 2.35 6.18 -51.93 -0.32 2.03 16 31 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.33 7.21 5.92 -39.29 -0.23 6.97 16 33 H 0.05 0.59 7.94 -51.93 -0.41 0.18 16 34 H 0.06 1.11 7.48 -51.93 -0.39 0.72 16 35 H 0.06 0.99 7.18 -51.93 -0.37 0.61 16 36 H 0.14 1.59 6.09 -52.48 -0.32 1.27 16 37 H 0.13 1.02 8.06 -52.48 -0.42 0.59 16 38 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 39 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.05 0.62 7.70 -51.93 -0.40 0.22 16 LS Contribution 331.87 15.07 5.00 5.00 Total: -1.00 -28.80 331.87 -7.28 -36.07 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -5.88 Total: 5.58 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: -1.25 Total: -16.16 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: 0.01 Total: -39.40 kcal Atomic # 8 Polarization: -5.32 SS G_CDS: -0.19 Total: -5.51 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.04 Total: -2.02 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.80 -7.28 -36.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164968.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.042 kcal (2) G-P(sol) polarization free energy of solvation -28.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds