Wall clock time and date at job start Tue Mar 31 2020 05:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47182 * 2 1 4 4 H 1.09003 * 109.46726 * 306.89691 * 3 2 1 5 5 C 1.50704 * 109.46863 * 186.90770 * 3 2 1 6 6 H 1.08001 * 119.99854 * 242.59068 * 5 3 2 7 7 C 1.37878 * 120.00574 * 62.58605 * 5 3 2 8 8 N 1.31508 * 120.00077 * 195.59374 * 7 5 3 9 9 Si 1.86804 * 119.99684 * 15.58870 * 7 5 3 10 10 H 1.48499 * 109.46644 * 84.55885 * 9 7 5 11 11 H 1.48499 * 109.46902 * 204.55604 * 9 7 5 12 12 H 1.48499 * 109.47177 * 324.56232 * 9 7 5 13 13 N 1.46896 * 109.47366 * 66.90314 * 3 2 1 14 14 C 1.46903 * 110.99388 * 206.20849 * 13 3 2 15 15 H 1.08993 * 109.47987 * 327.12036 * 14 13 3 16 16 C 1.52999 * 109.46896 * 87.12503 * 14 13 3 17 17 C 1.50704 * 109.46569 * 207.11715 * 14 13 3 18 18 C 1.38222 * 120.01999 * 331.07688 * 17 14 13 19 19 C 1.38216 * 120.09806 * 179.78893 * 18 17 14 20 20 C 1.38299 * 120.12427 * 0.46617 * 19 18 17 21 21 C 1.38291 * 120.02972 * 359.78844 * 20 19 18 22 22 F 1.35102 * 120.04805 * 179.97438 * 21 20 19 23 23 C 1.38621 * 120.01111 * 151.35172 * 17 14 13 24 24 O 1.35949 * 120.06645 * 0.02562 * 23 17 14 25 25 C 1.42898 * 117.00122 * 96.43347 * 24 23 17 26 26 H 1.09002 * 109.47669 * 173.78831 * 1 2 3 27 27 H 1.08999 * 109.47388 * 293.78852 * 1 2 3 28 28 H 1.08998 * 109.47068 * 53.78541 * 1 2 3 29 29 H 1.09003 * 109.46763 * 119.99788 * 2 1 3 30 30 H 1.09005 * 109.46929 * 239.99372 * 2 1 3 31 31 H 0.97002 * 120.00080 * 180.02562 * 8 7 5 32 32 H 1.00895 * 111.00169 * 330.16235 * 13 3 2 33 33 H 1.09003 * 109.47603 * 64.79461 * 16 14 13 34 34 H 1.09008 * 109.47229 * 184.79203 * 16 14 13 35 35 H 1.08998 * 109.47280 * 304.78587 * 16 14 13 36 36 H 1.08007 * 119.95017 * 0.02562 * 18 17 14 37 37 H 1.08004 * 119.93831 * 180.20588 * 19 18 17 38 38 H 1.08004 * 119.98633 * 179.76615 * 20 19 18 39 39 H 1.08998 * 109.47350 * 306.64324 * 25 24 23 40 40 H 1.08999 * 109.47270 * 66.64317 * 25 24 23 41 41 H 1.09003 * 109.47206 * 186.64412 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5794 1.9906 -0.8219 5 6 3.5373 1.4458 -0.1709 6 1 4.1690 1.8439 0.6094 7 6 4.1009 0.9405 -1.3233 8 7 5.3847 0.6573 -1.3580 9 14 3.0408 0.6582 -2.8353 10 1 2.9279 1.9238 -3.6039 11 1 3.6638 -0.3853 -3.6887 12 1 1.6883 0.2118 -2.4152 13 7 1.6910 2.0852 1.2739 14 6 1.5792 3.5414 1.1154 15 1 2.2877 3.8802 0.3596 16 6 0.1572 3.8990 0.6782 17 6 1.8851 4.2145 2.4286 18 6 1.6255 3.5602 3.6181 19 6 1.9096 4.1743 4.8233 20 6 2.4455 5.4491 4.8435 21 6 2.7024 6.1106 3.6566 22 9 3.2254 7.3561 3.6758 23 6 2.4218 5.4925 2.4441 24 8 2.6723 6.1403 1.2754 25 6 1.6740 7.0517 0.8120 26 1 -0.3634 -1.0216 -0.1112 27 1 -0.3634 0.4145 0.9403 28 1 -0.3633 0.6071 -0.8291 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5140 -0.8900 31 1 5.7813 0.3022 -2.1689 32 1 0.8412 1.6965 1.6542 33 1 -0.5434 3.6374 1.4712 34 1 0.0967 4.9689 0.4783 35 1 -0.0947 3.3457 -0.2264 36 1 1.2036 2.5660 3.6057 37 1 1.7087 3.6593 5.7512 38 1 2.6631 5.9283 5.7866 39 1 0.7107 6.5437 0.7677 40 1 1.6078 7.8971 1.4968 41 1 1.9421 7.4095 -0.1822 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255164969.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:30 Heat of formation + Delta-G solvation = -52.378635 kcal Electronic energy + Delta-G solvation = -22924.547080 eV Core-core repulsion = 19526.574168 eV Total energy + Delta-G solvation = -3397.972912 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.73602 -39.89862 -37.39740 -36.77487 -33.72154 -31.92197 -30.08182 -29.81654 -28.68734 -26.78943 -26.52127 -23.74331 -22.58313 -22.18315 -20.41533 -19.75693 -17.84242 -16.86304 -16.71713 -16.60135 -15.89704 -15.01958 -14.89371 -14.79865 -14.55784 -14.39938 -14.08792 -13.62253 -13.20904 -12.97428 -12.81926 -12.66131 -12.23460 -12.17671 -11.97954 -11.85526 -11.61451 -11.44586 -10.99552 -10.90456 -10.77324 -10.40064 -10.25158 -10.08692 -9.78370 -9.42713 -9.16508 -8.52015 -8.44583 -8.42753 -7.42613 -6.02621 -3.94662 1.19809 1.33859 3.28686 3.36994 3.39785 3.50047 3.91175 4.31441 4.45251 4.77304 4.97094 5.10915 5.22804 5.24300 5.26396 5.36625 5.47056 5.51174 5.58066 5.59595 5.77724 5.82652 5.84895 5.88836 6.00788 6.15510 6.19847 6.27104 6.34281 6.49350 6.50819 6.65655 6.69941 6.76800 6.83614 6.97132 7.22400 7.60587 7.79323 7.94788 8.22831 8.77309 9.15945 9.63584 11.10969 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.019053 B = 0.005476 C = 0.005123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.258992 B = 5111.699116 C = 5464.053599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.134 4.134 3 C 0.197 3.803 4 H -0.004 1.004 5 C -0.501 4.501 6 H 0.080 0.920 7 C 0.073 3.927 8 N -0.893 5.893 9 Si 0.854 3.146 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.251 1.251 13 N -0.665 5.665 14 C 0.124 3.876 15 H 0.105 0.895 16 C -0.177 4.177 17 C -0.039 4.039 18 C -0.093 4.093 19 C -0.100 4.100 20 C -0.155 4.155 21 C 0.071 3.929 22 F -0.139 7.139 23 C 0.063 3.937 24 O -0.321 6.321 25 C 0.030 3.970 26 H 0.043 0.957 27 H 0.045 0.955 28 H 0.043 0.957 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.262 0.738 32 H 0.319 0.681 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.137 0.863 37 H 0.131 0.869 38 H 0.133 0.867 39 H 0.050 0.950 40 H 0.043 0.957 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.395 8.471 8.537 17.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.172 4.172 3 C 0.089 3.911 4 H 0.014 0.986 5 C -0.539 4.539 6 H 0.098 0.902 7 C -0.129 4.129 8 N -0.531 5.531 9 Si 0.682 3.318 10 H -0.207 1.207 11 H -0.216 1.216 12 H -0.176 1.176 13 N -0.296 5.296 14 C 0.014 3.986 15 H 0.123 0.877 16 C -0.236 4.236 17 C -0.040 4.040 18 C -0.112 4.112 19 C -0.119 4.119 20 C -0.174 4.174 21 C 0.051 3.949 22 F -0.118 7.118 23 C 0.018 3.982 24 O -0.237 6.237 25 C -0.064 4.064 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.137 0.863 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.155 0.845 37 H 0.149 0.851 38 H 0.151 0.849 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.403 8.435 8.507 16.539 hybrid contribution -1.222 0.229 -1.320 1.813 sum -12.625 8.664 7.187 16.915 Atomic orbital electron populations 1.21919 0.98646 1.00380 1.00304 1.22213 0.92396 1.00155 1.02431 1.19505 0.96825 0.89403 0.85376 0.98621 1.20981 0.89279 1.40046 1.03593 0.90238 1.24903 0.94687 0.94856 0.98471 1.69973 1.11813 1.43419 1.27852 0.87436 0.82232 0.78061 0.84101 1.20740 1.21590 1.17588 1.60572 1.37822 1.00972 1.30195 1.20317 0.95750 0.89578 0.92983 0.87657 1.22601 0.97704 1.01726 1.01589 1.20194 0.94664 0.92222 0.96927 1.21000 0.99442 1.00056 0.90664 1.21018 0.98367 0.93897 0.98569 1.20969 1.03520 0.96496 0.96456 1.18078 1.01396 0.81184 0.94206 1.91458 1.84301 1.38660 1.97375 1.18527 1.02525 0.92744 0.84411 1.86124 1.43474 1.58045 1.36043 1.23130 0.91493 0.91732 1.00033 0.93788 0.93556 0.93802 0.91797 0.91628 0.92825 0.86264 0.92781 0.92573 0.91962 0.84483 0.85086 0.84945 0.93109 0.93820 0.88679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.66 37.16 0.36 -2.16 16 2 C -0.13 -2.74 4.75 -26.73 -0.13 -2.87 16 3 C 0.20 4.41 1.38 -68.87 -0.10 4.32 16 4 H 0.00 -0.08 6.11 -51.93 -0.32 -0.40 16 5 C -0.50 -13.95 9.03 -34.44 -0.31 -14.26 16 6 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 7 C 0.07 2.08 5.31 -17.82 -0.09 1.98 16 8 N -0.89 -27.40 13.96 55.43 0.77 -26.63 16 9 Si 0.85 20.84 25.83 -169.99 -4.39 16.44 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.25 -5.64 5.35 56.52 0.30 -5.33 16 13 N -0.67 -12.70 5.13 -102.17 -0.52 -13.23 16 14 C 0.12 2.20 2.36 -68.86 -0.16 2.04 16 15 H 0.11 2.25 7.09 -51.93 -0.37 1.88 16 16 C -0.18 -2.53 9.13 37.16 0.34 -2.19 16 17 C -0.04 -0.64 5.04 -104.48 -0.53 -1.17 16 18 C -0.09 -1.33 9.31 -39.60 -0.37 -1.70 16 19 C -0.10 -1.23 10.04 -39.57 -0.40 -1.63 16 20 C -0.16 -2.00 10.02 -39.54 -0.40 -2.40 16 21 C 0.07 1.10 7.31 -39.30 -0.29 0.81 16 22 F -0.14 -2.19 17.11 2.25 0.04 -2.16 16 23 C 0.06 1.06 5.70 -39.18 -0.22 0.83 16 24 O -0.32 -5.52 9.35 -19.58 -0.18 -5.70 16 25 C 0.03 0.38 11.12 101.05 1.12 1.51 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.65 6.73 -51.93 -0.35 0.30 16 28 H 0.04 0.71 8.13 -51.93 -0.42 0.29 16 29 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.07 1.46 4.58 -51.93 -0.24 1.22 16 31 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 32 H 0.32 5.23 5.87 -39.29 -0.23 5.00 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.72 5.55 -51.92 -0.29 0.43 16 35 H 0.06 0.92 7.56 -51.93 -0.39 0.52 16 36 H 0.14 1.82 7.02 -52.48 -0.37 1.45 16 37 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 38 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 39 H 0.05 0.58 5.57 -51.93 -0.29 0.29 16 40 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 328.53 15.07 4.95 4.95 Total: -1.00 -31.30 328.53 -6.38 -37.68 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -5.88 Total: 5.52 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: -1.17 Total: -16.88 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: 0.25 Total: -39.86 kcal Atomic # 8 Polarization: -5.52 SS G_CDS: -0.18 Total: -5.70 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.04 Total: -2.16 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.39 Total: 16.44 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.30 -6.38 -37.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164969.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.696 kcal (2) G-P(sol) polarization free energy of solvation -31.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds