Wall clock time and date at job start Tue Mar 31 2020 05:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30829 * 125.96085 * 2 1 4 4 C 1.33239 * 109.82920 * 180.02562 * 3 2 1 5 5 C 1.50707 * 125.52839 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.46625 * 345.01279 * 5 4 3 7 7 C 1.52993 * 109.47159 * 105.01656 * 5 4 3 8 8 N 1.46503 * 109.46943 * 225.01717 * 5 4 3 9 9 C 1.34772 * 120.00150 * 154.99716 * 8 5 4 10 10 O 1.21589 * 119.99837 * 0.02562 * 9 8 5 11 11 N 1.34772 * 120.00116 * 179.97438 * 9 8 5 12 12 C 1.46505 * 119.99846 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.46914 * 179.97438 * 12 11 9 14 14 C 1.52998 * 109.46882 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.47072 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99687 * 0.02562 * 15 14 13 17 17 C 1.37870 * 120.00154 * 179.97438 * 15 14 13 18 18 N 1.31522 * 120.00236 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 120.00225 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47067 * 89.99507 * 19 17 15 21 21 H 1.48493 * 109.47410 * 209.99696 * 19 17 15 22 22 H 1.48498 * 109.46872 * 330.00049 * 19 17 15 23 23 N 1.30714 * 108.94945 * 359.97438 * 4 3 2 24 24 N 1.34428 * 125.96156 * 180.02562 * 2 1 3 25 25 H 0.97003 * 126.82574 * 359.97438 * 24 2 1 26 26 H 1.08997 * 109.47240 * 90.00565 * 1 2 3 27 27 H 1.09010 * 109.47044 * 210.00470 * 1 2 3 28 28 H 1.09002 * 109.47122 * 330.00306 * 1 2 3 29 29 H 1.08997 * 109.47484 * 59.99753 * 7 5 4 30 30 H 1.09002 * 109.47061 * 180.02562 * 7 5 4 31 31 H 1.09007 * 109.47033 * 299.99500 * 7 5 4 32 32 H 0.97002 * 119.99883 * 334.99757 * 8 5 4 33 33 H 0.97002 * 120.00374 * 359.97438 * 11 9 8 34 34 H 1.08997 * 109.46754 * 299.99611 * 12 11 9 35 35 H 1.08997 * 109.46784 * 60.00173 * 12 11 9 36 36 H 1.08999 * 109.47061 * 300.00211 * 13 12 11 37 37 H 1.09000 * 109.46752 * 59.99664 * 13 12 11 38 38 H 1.09004 * 109.47146 * 300.00086 * 14 13 12 39 39 H 1.09001 * 109.46908 * 59.99936 * 14 13 12 40 40 H 0.96997 * 119.99941 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6888 -0.0006 5 6 4.7373 1.6236 -0.0013 6 1 4.4062 2.6276 -0.2671 7 6 5.3698 1.6471 1.3916 8 7 5.7255 1.1605 -0.9787 9 6 6.5912 2.0353 -1.5280 10 8 6.5523 3.2088 -1.2120 11 7 7.5006 1.6092 -2.4267 12 6 8.4420 2.5600 -3.0234 13 6 9.3589 1.8237 -4.0023 14 6 10.3416 2.8169 -4.6258 15 6 11.2452 2.0916 -5.5895 16 1 11.1297 1.0286 -5.7421 17 6 12.2185 2.7851 -6.2769 18 7 13.0067 2.1522 -7.1183 19 14 12.4177 4.6237 -6.0134 20 1 13.3785 4.8639 -4.9069 21 1 12.9302 5.2496 -7.2586 22 1 11.1027 5.2191 -5.6650 23 7 3.6195 -0.6168 -0.0004 24 7 2.2964 -1.0881 -0.0005 25 1 2.0094 -2.0147 -0.0006 26 1 -0.3633 -0.0001 -1.0276 27 1 -0.3634 -0.8900 0.5140 28 1 -0.3633 0.8900 0.5138 29 1 5.7007 0.6432 1.6573 30 1 6.2245 2.3236 1.3911 31 1 4.6345 1.9917 2.1188 32 1 5.7567 0.2243 -1.2305 33 1 7.5324 0.6728 -2.6780 34 1 7.8885 3.3338 -3.5554 35 1 9.0428 3.0180 -2.2377 36 1 9.9123 1.0501 -3.4699 37 1 8.7583 1.3654 -4.7879 38 1 9.7879 3.5902 -5.1583 39 1 10.9421 3.2756 -3.8403 40 1 13.6917 2.6401 -7.6016 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001259131539.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:55 Heat of formation + Delta-G solvation = 38.480683 kcal Electronic energy + Delta-G solvation = -20935.403843 eV Core-core repulsion = 17593.583600 eV Total energy + Delta-G solvation = -3341.820243 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.63812 -39.89885 -36.39882 -35.16819 -33.37204 -32.95764 -32.84018 -31.52824 -30.19044 -28.44525 -26.98416 -24.73953 -22.90185 -21.73495 -20.88068 -20.53800 -20.18206 -18.63644 -17.83303 -16.86285 -16.40616 -16.14579 -15.49721 -14.92827 -14.64801 -14.35949 -14.28234 -13.94277 -13.68619 -13.59697 -13.38509 -12.97863 -12.66485 -12.41394 -12.18426 -11.98589 -11.85947 -11.60459 -11.02439 -10.85865 -10.56661 -10.47902 -10.25781 -9.99491 -9.94109 -9.78297 -9.64472 -9.29221 -9.19523 -8.66564 -8.52568 -6.03571 -4.02095 1.09710 2.13709 2.28087 2.80232 3.31976 3.34275 3.41621 3.46617 3.52080 4.06776 4.28669 4.40372 4.47399 4.79544 4.85779 5.01042 5.16417 5.21598 5.30663 5.44659 5.58243 5.70297 5.74412 5.75306 5.87189 6.06275 6.08741 6.36446 6.42618 6.51661 6.56436 6.73709 6.86514 7.02920 7.27501 7.40775 7.62874 7.78874 8.11851 8.53157 8.71530 9.00350 9.58807 11.09639 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.037659 B = 0.002456 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.330605 B =11398.566193 C =11680.137093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.285 3.715 3 N -0.530 5.530 4 C 0.227 3.773 5 C 0.259 3.741 6 H 0.116 0.884 7 C -0.157 4.157 8 N -0.744 5.744 9 C 0.705 3.295 10 O -0.590 6.590 11 N -0.740 5.740 12 C 0.133 3.867 13 C -0.113 4.113 14 C -0.011 4.011 15 C -0.521 4.521 16 H 0.071 0.929 17 C 0.065 3.935 18 N -0.904 5.904 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.264 1.264 23 N -0.306 5.306 24 N -0.481 5.481 25 H 0.441 0.559 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.100 0.900 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.399 0.601 33 H 0.395 0.605 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.019 0.981 39 H 0.015 0.985 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.263 -7.753 17.217 32.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.006 3.994 3 N -0.259 5.259 4 C -0.056 4.056 5 C 0.150 3.850 6 H 0.134 0.866 7 C -0.217 4.217 8 N -0.401 5.401 9 C 0.405 3.595 10 O -0.468 6.468 11 N -0.394 5.394 12 C 0.010 3.990 13 C -0.151 4.151 14 C -0.049 4.049 15 C -0.559 4.559 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.543 5.543 19 Si 0.707 3.293 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.188 1.188 23 N -0.135 5.135 24 N -0.200 5.200 25 H 0.287 0.713 26 H 0.112 0.888 27 H 0.102 0.898 28 H 0.119 0.881 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.233 0.767 33 H 0.229 0.771 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.037 0.963 39 H 0.033 0.967 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -25.551 -6.620 17.361 31.593 hybrid contribution -0.124 -0.785 -0.243 0.831 sum -25.675 -7.405 17.118 31.735 Atomic orbital electron populations 1.20428 0.83354 1.05162 1.04811 1.24469 0.96753 0.82682 0.95471 1.70361 1.01041 1.29527 1.25014 1.24277 0.93401 0.90102 0.97832 1.18805 0.81311 0.95181 0.89661 0.86586 1.22179 1.01875 1.03063 0.94534 1.45089 1.36486 1.11596 1.46934 1.15891 0.79405 0.84842 0.79349 1.90922 1.74253 1.15672 1.65985 1.45318 1.36118 1.12737 1.45245 1.21528 0.89948 0.91411 0.96136 1.21709 0.96994 0.99517 0.96896 1.19504 0.94331 0.95131 0.95952 1.21102 1.15191 0.96770 1.22828 0.91042 1.25037 0.95404 0.98421 0.94710 1.69917 1.20537 1.36301 1.27529 0.86766 0.78991 0.85888 0.77613 1.20243 1.21417 1.18825 1.77950 0.96889 1.12165 1.26522 1.47997 1.04210 1.10154 1.57624 0.71306 0.88769 0.89750 0.88130 0.92009 0.90342 0.91358 0.76654 0.77118 0.91898 0.91867 0.92140 0.92169 0.96256 0.96675 0.92735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.20 10.51 36.01 0.38 0.18 16 2 C 0.28 2.10 8.24 -155.70 -1.28 0.81 16 3 N -0.53 -5.83 11.19 -8.16 -0.09 -5.93 16 4 C 0.23 2.59 6.95 -156.85 -1.09 1.50 16 5 C 0.26 3.07 3.12 -69.08 -0.22 2.85 16 6 H 0.12 1.56 7.58 -51.93 -0.39 1.16 16 7 C -0.16 -1.64 9.47 37.15 0.35 -1.29 16 8 N -0.74 -9.08 5.07 -59.81 -0.30 -9.38 16 9 C 0.71 10.90 8.53 -86.93 -0.74 10.16 16 10 O -0.59 -11.28 16.01 5.29 0.08 -11.20 16 11 N -0.74 -10.77 5.56 -65.22 -0.36 -11.13 16 12 C 0.13 2.28 5.67 -4.04 -0.02 2.26 16 13 C -0.11 -2.15 5.27 -26.73 -0.14 -2.29 16 14 C -0.01 -0.27 4.04 -27.88 -0.11 -0.38 16 15 C -0.52 -14.83 9.66 -34.44 -0.33 -15.16 16 16 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 17 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 18 N -0.90 -28.00 13.96 55.43 0.77 -27.23 16 19 Si 0.88 21.98 27.47 -169.99 -4.67 17.31 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 23 N -0.31 -3.16 12.46 32.42 0.40 -2.76 16 24 N -0.48 -3.34 7.45 32.62 0.24 -3.09 16 25 H 0.44 1.38 8.96 -182.33 -1.63 -0.25 16 26 H 0.09 0.16 8.14 -51.93 -0.42 -0.27 16 27 H 0.08 0.00 8.14 -51.92 -0.42 -0.42 16 28 H 0.10 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.40 4.20 8.34 -40.82 -0.34 3.86 16 33 H 0.40 4.72 8.49 -40.82 -0.35 4.37 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 39 H 0.01 0.35 7.57 -51.93 -0.39 -0.04 16 40 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 342.69 15.07 5.16 5.16 Total: -1.00 -36.45 342.69 -9.36 -45.81 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -7.30 Total: 1.98 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -3.31 Total: 0.46 kcal Atomic # 7 Polarization: -60.19 SS G_CDS: 0.66 Total: -59.52 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.08 Total: -11.20 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -36.45 -9.36 -45.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259131539.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.290 kcal (2) G-P(sol) polarization free energy of solvation -36.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds