Wall clock time and date at job start Tue Mar 31 2020 05:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30834 * 125.95659 * 2 1 4 4 C 1.33241 * 109.82716 * 179.97438 * 3 2 1 5 5 C 1.50701 * 125.52704 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.47316 * 15.00149 * 5 4 3 7 7 C 1.52999 * 109.47320 * 254.99765 * 5 4 3 8 8 N 1.46505 * 109.47033 * 135.00064 * 5 4 3 9 9 C 1.34772 * 119.99996 * 205.00080 * 8 5 4 10 10 O 1.21591 * 120.00247 * 359.97438 * 9 8 5 11 11 N 1.34778 * 120.00176 * 179.97438 * 9 8 5 12 12 C 1.46503 * 119.99874 * 179.97438 * 11 9 8 13 13 C 1.53005 * 109.46563 * 180.02562 * 12 11 9 14 14 C 1.53003 * 109.46875 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.47320 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99458 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00051 * 179.97438 * 15 14 13 18 18 N 1.31509 * 119.99967 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99760 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46771 * 60.00925 * 19 17 15 21 21 H 1.48504 * 109.47220 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47551 * 300.00847 * 19 17 15 23 23 N 1.30718 * 108.94820 * 359.97438 * 4 3 2 24 24 N 1.34428 * 125.96307 * 179.97438 * 2 1 3 25 25 H 0.96998 * 126.82131 * 0.02562 * 24 2 1 26 26 H 1.09005 * 109.47279 * 90.00387 * 1 2 3 27 27 H 1.09000 * 109.47450 * 210.00065 * 1 2 3 28 28 H 1.08997 * 109.47789 * 330.00215 * 1 2 3 29 29 H 1.08997 * 109.47240 * 300.00430 * 7 5 4 30 30 H 1.08999 * 109.46771 * 59.99642 * 7 5 4 31 31 H 1.08994 * 109.47116 * 179.97438 * 7 5 4 32 32 H 0.97002 * 119.99984 * 25.00069 * 8 5 4 33 33 H 0.97002 * 119.99803 * 0.02562 * 11 9 8 34 34 H 1.08990 * 109.47431 * 299.99876 * 12 11 9 35 35 H 1.08997 * 109.46839 * 60.01079 * 12 11 9 36 36 H 1.08998 * 109.47084 * 299.99569 * 13 12 11 37 37 H 1.08994 * 109.47356 * 60.00157 * 13 12 11 38 38 H 1.09003 * 109.46983 * 300.00155 * 14 13 12 39 39 H 1.09003 * 109.47044 * 59.99572 * 14 13 12 40 40 H 0.97005 * 119.99832 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2752 1.0591 0.0000 4 6 3.5551 0.6889 0.0006 5 6 4.7371 1.6238 0.0002 6 1 4.4062 2.6279 0.2654 7 6 5.3691 1.6464 -1.3930 8 7 5.7258 1.1614 0.9774 9 6 6.5916 2.0366 1.5258 10 8 6.5526 3.2099 1.2091 11 7 7.5009 1.6113 2.4252 12 6 8.4425 2.5626 3.0208 13 6 9.3590 1.8272 4.0006 14 6 10.3420 2.8208 4.6232 15 6 11.2444 2.0966 5.5887 16 1 11.1287 1.0339 5.7426 17 6 12.2184 2.7906 6.2748 18 7 12.3596 4.0845 6.0870 19 14 13.3365 1.8930 7.4722 20 1 14.0902 0.8374 6.7492 21 1 14.2907 2.8573 8.0764 22 1 12.5173 1.2709 8.5432 23 7 3.6194 -0.6167 0.0015 24 7 2.2964 -1.0881 0.0005 25 1 2.0093 -2.0146 0.0006 26 1 -0.3634 -0.0001 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 5.7000 0.6423 -1.6582 30 1 4.6335 1.9904 -2.1201 31 1 6.2237 2.3229 -1.3933 32 1 5.7572 0.2253 1.2298 33 1 7.5323 0.6752 2.6776 34 1 9.0435 3.0195 2.2347 35 1 7.8892 3.3371 3.5519 36 1 8.7583 1.3701 4.7868 37 1 9.9122 1.0528 3.4693 38 1 10.9428 3.2784 3.8371 39 1 9.7885 3.5950 5.1545 40 1 13.0447 4.5728 6.5700 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001259131540.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:56 Heat of formation + Delta-G solvation = 35.113765 kcal Electronic energy + Delta-G solvation = -20884.202627 eV Core-core repulsion = 17542.236383 eV Total energy + Delta-G solvation = -3341.966244 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.61320 -39.82803 -36.32494 -35.06255 -33.34453 -32.94597 -32.81853 -31.35431 -30.02112 -28.42277 -26.56326 -24.69680 -23.05560 -21.73070 -20.81094 -20.56462 -20.20566 -18.59472 -17.76754 -16.65585 -16.23269 -16.03769 -15.39285 -14.84102 -14.60730 -14.43350 -14.19303 -14.04435 -13.65668 -13.61375 -13.32276 -12.92049 -12.38885 -12.24545 -12.14950 -11.76614 -11.72721 -11.52558 -10.85839 -10.67602 -10.59315 -10.54090 -10.45312 -10.08837 -9.91392 -9.81122 -9.40051 -9.23273 -9.10055 -8.57643 -8.33697 -5.98443 -4.01421 1.11944 2.15818 2.31360 2.85695 3.34241 3.38598 3.38857 3.40874 3.55684 4.09748 4.31641 4.43663 4.49630 4.83052 4.86128 5.05076 5.19914 5.23778 5.37074 5.48559 5.69462 5.75818 5.80796 5.87249 5.90242 6.10038 6.23933 6.41685 6.57768 6.59347 6.67788 6.85616 7.06977 7.12109 7.65389 7.67531 7.81081 8.00680 8.18840 8.41695 8.78831 9.05058 9.62351 11.12786 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.036529 B = 0.002360 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.331725 B =11863.167449 C =12222.695324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.284 3.716 3 N -0.530 5.530 4 C 0.228 3.772 5 C 0.259 3.741 6 H 0.117 0.883 7 C -0.157 4.157 8 N -0.745 5.745 9 C 0.705 3.295 10 O -0.589 6.589 11 N -0.740 5.740 12 C 0.135 3.865 13 C -0.121 4.121 14 C 0.024 3.976 15 C -0.522 4.522 16 H 0.054 0.946 17 C 0.056 3.944 18 N -0.893 5.893 19 Si 0.894 3.106 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 N -0.306 5.306 24 N -0.482 5.482 25 H 0.441 0.559 26 H 0.093 0.907 27 H 0.084 0.916 28 H 0.100 0.900 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.399 0.601 33 H 0.394 0.606 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.020 0.980 39 H 0.019 0.981 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.506 -12.122 -14.689 31.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.006 3.994 3 N -0.259 5.259 4 C -0.055 4.055 5 C 0.150 3.850 6 H 0.134 0.866 7 C -0.216 4.216 8 N -0.402 5.402 9 C 0.404 3.596 10 O -0.467 6.467 11 N -0.394 5.394 12 C 0.012 3.988 13 C -0.159 4.159 14 C -0.014 4.014 15 C -0.561 4.561 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.532 5.532 19 Si 0.721 3.279 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 N -0.136 5.136 24 N -0.200 5.200 25 H 0.287 0.713 26 H 0.112 0.888 27 H 0.103 0.897 28 H 0.119 0.881 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.233 0.767 33 H 0.227 0.773 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -23.832 -10.853 -14.900 30.129 hybrid contribution 0.290 -2.117 0.944 2.336 sum -23.542 -12.970 -13.957 30.286 Atomic orbital electron populations 1.20422 0.83371 1.05245 1.04708 1.24467 0.96749 0.82692 0.95503 1.70368 1.01054 1.29509 1.24978 1.24291 0.93407 0.90095 0.97747 1.18806 0.81304 0.95193 0.89681 0.86571 1.22179 1.01892 1.03039 0.94532 1.45094 1.36498 1.11573 1.47012 1.15912 0.79424 0.84844 0.79396 1.90926 1.74205 1.15670 1.65925 1.45376 1.36158 1.12728 1.45160 1.21522 0.89811 0.91306 0.96149 1.21893 0.97334 0.99949 0.96689 1.19026 0.92955 0.93854 0.95524 1.21170 1.16193 0.94776 1.23927 0.92733 1.25032 0.97510 0.94878 0.97090 1.69957 1.33904 1.07026 1.42356 0.86640 0.80501 0.79411 0.81311 1.20275 1.21290 1.20289 1.77950 0.96863 1.12184 1.26575 1.47995 1.04227 1.10134 1.57663 0.71337 0.88822 0.89750 0.88108 0.92051 0.91387 0.90302 0.76729 0.77298 0.91851 0.91886 0.92809 0.92761 0.96211 0.96228 0.92888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.21 10.51 36.00 0.38 0.17 16 2 C 0.28 2.15 8.24 -155.70 -1.28 0.87 16 3 N -0.53 -5.97 11.19 -8.16 -0.09 -6.06 16 4 C 0.23 2.66 6.95 -156.85 -1.09 1.57 16 5 C 0.26 3.17 3.12 -69.08 -0.22 2.95 16 6 H 0.12 1.61 7.58 -51.93 -0.39 1.22 16 7 C -0.16 -1.70 9.47 37.16 0.35 -1.35 16 8 N -0.74 -9.43 5.07 -59.81 -0.30 -9.73 16 9 C 0.70 11.34 8.53 -86.92 -0.74 10.60 16 10 O -0.59 -11.72 16.01 5.29 0.08 -11.64 16 11 N -0.74 -11.31 5.56 -65.23 -0.36 -11.68 16 12 C 0.14 2.48 5.67 -4.04 -0.02 2.46 16 13 C -0.12 -2.41 5.27 -26.73 -0.14 -2.55 16 14 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 15 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 16 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -27.07 13.29 55.43 0.74 -26.33 16 19 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 N -0.31 -3.23 12.46 32.42 0.40 -2.83 16 24 N -0.48 -3.42 7.45 32.62 0.24 -3.18 16 25 H 0.44 1.44 8.96 -182.33 -1.63 -0.19 16 26 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 27 H 0.08 0.03 8.14 -51.93 -0.42 -0.39 16 28 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.40 4.34 8.34 -40.82 -0.34 4.00 16 33 H 0.39 4.92 8.49 -40.82 -0.35 4.57 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 LS Contribution 346.28 15.07 5.22 5.22 Total: -1.00 -36.03 346.28 -9.73 -45.76 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -7.33 Total: 2.13 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: -3.31 Total: 1.64 kcal Atomic # 7 Polarization: -60.43 SS G_CDS: 0.63 Total: -59.81 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.08 Total: -11.64 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -36.03 -9.73 -45.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259131540.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.873 kcal (2) G-P(sol) polarization free energy of solvation -36.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds