Wall clock time and date at job start Tue Mar 31 2020 05:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47129 * 2 1 4 4 C 1.53004 * 109.47150 * 120.00159 * 2 1 3 5 5 N 1.46494 * 109.47096 * 174.47209 * 4 2 1 6 6 N 1.40593 * 127.38125 * 95.35002 * 5 4 2 7 7 N 1.28904 * 106.81436 * 180.26687 * 6 5 4 8 8 N 1.28420 * 110.32167 * 359.76664 * 7 6 5 9 9 C 1.31481 * 110.50572 * 359.97438 * 8 7 6 10 10 N 1.38373 * 126.43943 * 179.97438 * 9 8 7 11 11 C 1.47443 * 110.99761 * 107.88824 * 10 9 8 12 12 C 1.54317 * 107.37045 * 236.65941 * 11 10 9 13 13 C 1.55395 * 102.90159 * 337.89571 * 12 11 10 14 14 O 1.42900 * 110.87229 * 277.39080 * 13 12 11 15 15 C 1.50700 * 111.05930 * 153.64835 * 13 12 11 16 16 H 1.07995 * 120.00062 * 247.58557 * 15 13 12 17 17 C 1.37874 * 120.00031 * 67.58528 * 15 13 12 18 18 N 1.31520 * 119.99922 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 120.00229 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.46919 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47003 * 120.00143 * 19 17 15 22 22 H 1.48499 * 109.47158 * 240.00139 * 19 17 15 23 23 C 1.47845 * 111.00450 * 347.04628 * 10 9 8 24 24 H 1.08997 * 109.47030 * 299.99788 * 1 2 3 25 25 H 1.09001 * 109.46807 * 60.00097 * 1 2 3 26 26 H 1.09006 * 109.46925 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47030 * 240.00211 * 2 1 3 28 28 H 1.09004 * 109.46796 * 296.39515 * 3 2 1 29 29 H 1.09004 * 109.47036 * 56.39365 * 3 2 1 30 30 H 1.08997 * 109.46926 * 176.39416 * 3 2 1 31 31 H 1.08996 * 109.46830 * 54.47351 * 4 2 1 32 32 H 1.08998 * 109.46617 * 294.47412 * 4 2 1 33 33 H 1.08993 * 109.89452 * 356.15075 * 11 10 9 34 34 H 1.09006 * 109.88781 * 117.17590 * 11 10 9 35 35 H 1.09001 * 110.70781 * 96.18167 * 12 11 10 36 36 H 1.09003 * 110.70948 * 219.41585 * 12 11 10 37 37 H 0.96696 * 113.99921 * 292.30540 * 14 13 12 38 38 H 0.96998 * 119.99855 * 179.97438 * 18 17 15 39 39 H 1.09000 * 110.37593 * 265.19445 * 23 10 9 40 40 H 1.09007 * 110.36745 * 27.53121 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.4990 -0.8376 1.1846 6 7 4.4502 0.0221 1.7614 7 7 5.6111 -0.4464 1.4542 8 7 5.4893 -1.5129 0.7492 9 6 4.2197 -1.7970 0.5593 10 7 3.7154 -2.8713 -0.1522 11 6 3.1274 -3.8755 0.7533 12 6 3.8415 -5.2160 0.4805 13 6 4.4010 -5.0249 -0.9566 14 8 3.3961 -5.2993 -1.9348 15 6 5.6187 -5.8836 -1.1822 16 1 6.5870 -5.4237 -1.3138 17 6 5.4967 -7.2564 -1.2207 18 7 4.3175 -7.8165 -1.0610 19 14 7.0060 -8.3209 -1.5011 20 1 8.2022 -7.4538 -1.6510 21 1 7.1947 -9.2276 -0.3404 22 1 6.8208 -9.1272 -2.7343 23 6 4.7752 -3.5218 -0.9519 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.7304 1.9373 -0.9206 29 1 1.6249 1.9747 0.8559 30 1 3.1281 1.4432 0.0646 31 1 1.5982 -1.7164 1.3000 32 1 1.7597 -0.1535 2.1364 33 1 3.2832 -3.5766 1.7898 34 1 2.0607 -3.9761 0.5529 35 1 4.6526 -5.3724 1.1917 36 1 3.1332 -6.0439 0.5140 37 1 3.1294 -6.2278 -1.9749 38 1 4.2316 -8.7823 -1.0884 39 1 4.7789 -3.1285 -1.9685 40 1 5.7484 -3.3744 -0.4835 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262212521.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:13 Heat of formation + Delta-G solvation = 71.114531 kcal Electronic energy + Delta-G solvation = -23159.777703 eV Core-core repulsion = 19819.372569 eV Total energy + Delta-G solvation = -3340.405134 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.70609 -38.79181 -37.12934 -35.13244 -33.28765 -32.17615 -31.60220 -29.12073 -28.49215 -27.40985 -27.18102 -25.02615 -22.90170 -22.40893 -20.85320 -20.25461 -19.65455 -17.60279 -16.97345 -16.45697 -16.11190 -15.35799 -15.00971 -14.91305 -14.21239 -14.11133 -13.71382 -13.32269 -13.07763 -12.75050 -12.47329 -12.40146 -12.29959 -12.02148 -11.83364 -11.68060 -11.44718 -11.31525 -11.22453 -10.98575 -10.93443 -10.83823 -10.58686 -10.48183 -10.25183 -10.11932 -9.86504 -9.45171 -8.71495 -8.35971 -8.24353 -6.33927 -4.41041 1.27315 1.95383 2.59260 3.17570 3.26887 3.32337 3.86405 4.24618 4.29714 4.47912 4.73562 4.76839 4.93604 4.95862 5.15508 5.27170 5.37768 5.42764 5.53270 5.56466 5.60122 5.63182 5.73221 5.76595 5.87041 5.88754 5.99640 6.11517 6.12635 6.30880 6.36875 6.61474 6.75956 6.91798 7.20220 7.25985 7.29863 7.70677 7.95365 8.62278 8.82288 9.28170 9.43077 10.74015 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.026535 B = 0.004845 C = 0.004374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.939525 B = 5778.035513 C = 6400.422177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.112 4.112 3 C -0.147 4.147 4 C 0.134 3.866 5 N -0.384 5.384 6 N -0.101 5.101 7 N -0.037 5.037 8 N -0.359 5.359 9 C 0.431 3.569 10 N -0.447 5.447 11 C 0.050 3.950 12 C -0.145 4.145 13 C 0.257 3.743 14 O -0.581 6.581 15 C -0.534 4.534 16 H 0.068 0.932 17 C 0.072 3.928 18 N -0.899 5.899 19 Si 0.903 3.097 20 H -0.270 1.270 21 H -0.282 1.282 22 H -0.281 1.281 23 C 0.063 3.937 24 H 0.057 0.943 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.087 0.913 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.044 0.956 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.386 0.614 38 H 0.269 0.731 39 H 0.084 0.916 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.746 10.297 3.763 14.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.132 4.132 3 C -0.205 4.205 4 C 0.011 3.989 5 N -0.183 5.183 6 N -0.088 5.088 7 N -0.033 5.033 8 N -0.218 5.218 9 C 0.065 3.935 10 N -0.173 5.173 11 C -0.076 4.076 12 C -0.184 4.184 13 C 0.216 3.784 14 O -0.391 6.391 15 C -0.573 4.573 16 H 0.086 0.914 17 C -0.130 4.130 18 N -0.539 5.539 19 Si 0.730 3.270 20 H -0.194 1.194 21 H -0.208 1.208 22 H -0.207 1.207 23 C -0.063 4.063 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.105 0.895 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.063 0.937 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.104 0.896 37 H 0.238 0.762 38 H 0.079 0.921 39 H 0.102 0.898 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.143 11.716 3.855 14.779 hybrid contribution 0.243 -1.843 0.215 1.871 sum -7.899 9.874 4.070 13.283 Atomic orbital electron populations 1.21747 0.93340 1.02530 1.02360 1.21515 0.96757 0.97051 0.97874 1.21842 1.01603 0.95098 1.01909 1.22060 0.72824 1.03412 1.00570 1.51393 1.09053 1.18342 1.39478 1.82431 0.92276 1.14445 1.19693 1.77843 1.15511 1.03360 1.06617 1.74920 1.14543 1.12284 1.20038 1.23667 0.86687 0.92829 0.90302 1.60567 1.31270 1.06488 1.18931 1.22985 1.00122 0.92026 0.92422 1.23404 0.99927 0.93735 1.01383 1.19535 0.86873 0.88116 0.83918 1.86095 1.59424 1.33641 1.59987 1.21551 0.94177 0.91295 1.50236 0.91409 1.24987 0.96639 0.97919 0.93426 1.69566 1.22780 1.11521 1.50027 0.86347 0.82653 0.80049 0.77903 1.19428 1.20829 1.20713 1.23343 0.91578 0.94776 0.96567 0.92383 0.91773 0.91910 0.89494 0.92332 0.92361 0.92546 0.88078 0.88109 0.93747 0.89783 0.91614 0.89594 0.76243 0.92117 0.89787 0.89357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.19 37.16 0.34 -0.76 16 2 C -0.11 -1.16 3.12 -90.61 -0.28 -1.44 16 3 C -0.15 -1.52 9.13 37.16 0.34 -1.19 16 4 C 0.13 1.48 5.87 -4.04 -0.02 1.46 16 5 N -0.38 -5.89 3.20 -61.86 -0.20 -6.09 16 6 N -0.10 -1.73 13.30 60.35 0.80 -0.92 16 7 N -0.04 -0.71 13.38 60.35 0.81 0.09 16 8 N -0.36 -7.19 10.67 30.10 0.32 -6.87 16 9 C 0.43 7.79 6.73 -320.42 -2.16 5.63 16 10 N -0.45 -8.23 5.19 -171.65 -0.89 -9.12 16 11 C 0.05 0.88 5.95 -2.84 -0.02 0.86 16 12 C -0.15 -3.05 5.65 -24.77 -0.14 -3.19 16 13 C 0.26 5.96 0.89 -89.50 -0.08 5.88 16 14 O -0.58 -14.11 13.18 -35.23 -0.46 -14.57 16 15 C -0.53 -13.65 8.25 -34.44 -0.28 -13.94 16 16 H 0.07 1.75 7.77 -52.49 -0.41 1.34 16 17 C 0.07 1.83 5.30 -17.82 -0.09 1.73 16 18 N -0.90 -22.63 10.78 55.43 0.60 -22.04 16 19 Si 0.90 20.00 29.54 -169.99 -5.02 14.98 16 20 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 23 C 0.06 1.33 5.75 -2.30 -0.01 1.32 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.73 7.10 -51.93 -0.37 0.36 16 31 H 0.10 1.04 7.27 -51.93 -0.38 0.66 16 32 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.04 0.72 7.57 -51.93 -0.39 0.33 16 34 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.07 1.44 8.04 -51.93 -0.42 1.02 16 36 H 0.09 1.87 7.85 -51.93 -0.41 1.46 16 37 H 0.39 9.54 6.93 45.56 0.32 9.86 16 38 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 39 H 0.08 1.80 8.14 -51.93 -0.42 1.37 16 40 H 0.09 1.94 6.66 -51.93 -0.35 1.59 16 LS Contribution 327.14 15.07 4.93 4.93 Total: -1.00 -27.14 327.14 -6.87 -34.01 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -5.34 Total: 9.24 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -2.41 Total: -3.63 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: 1.44 Total: -44.95 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -0.46 Total: -14.57 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.14 -6.87 -34.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262212521.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.124 kcal (2) G-P(sol) polarization free energy of solvation -27.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds