Wall clock time and date at job start Tue Mar 31 2020 05:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47129 * 2 1 4 4 C 1.53004 * 109.47150 * 120.00159 * 2 1 3 5 5 N 1.46494 * 109.47096 * 174.47209 * 4 2 1 6 6 N 1.40593 * 127.38125 * 95.35002 * 5 4 2 7 7 N 1.28904 * 106.81436 * 180.26687 * 6 5 4 8 8 N 1.28420 * 110.32167 * 359.76664 * 7 6 5 9 9 C 1.31481 * 110.50572 * 359.97438 * 8 7 6 10 10 N 1.38373 * 126.43943 * 179.97438 * 9 8 7 11 11 C 1.47443 * 110.99761 * 107.88824 * 10 9 8 12 12 C 1.54317 * 107.37045 * 236.65941 * 11 10 9 13 13 C 1.55395 * 102.90159 * 337.89571 * 12 11 10 14 14 O 1.42900 * 110.87229 * 277.39080 * 13 12 11 15 15 C 1.50700 * 111.05930 * 153.64835 * 13 12 11 16 16 H 1.07995 * 120.00062 * 247.58557 * 15 13 12 17 17 C 1.37874 * 120.00031 * 67.58528 * 15 13 12 18 18 N 1.31520 * 119.99922 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 120.00229 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.46919 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47003 * 120.00143 * 19 17 15 22 22 H 1.48499 * 109.47158 * 240.00139 * 19 17 15 23 23 C 1.47845 * 111.00450 * 347.04628 * 10 9 8 24 24 H 1.08997 * 109.47030 * 299.99788 * 1 2 3 25 25 H 1.09001 * 109.46807 * 60.00097 * 1 2 3 26 26 H 1.09006 * 109.46925 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47030 * 240.00211 * 2 1 3 28 28 H 1.09004 * 109.46796 * 296.39515 * 3 2 1 29 29 H 1.09004 * 109.47036 * 56.39365 * 3 2 1 30 30 H 1.08997 * 109.46926 * 176.39416 * 3 2 1 31 31 H 1.08996 * 109.46830 * 54.47351 * 4 2 1 32 32 H 1.08998 * 109.46617 * 294.47412 * 4 2 1 33 33 H 1.08993 * 109.89452 * 356.15075 * 11 10 9 34 34 H 1.09006 * 109.88781 * 117.17590 * 11 10 9 35 35 H 1.09001 * 110.70781 * 96.18167 * 12 11 10 36 36 H 1.09003 * 110.70948 * 219.41585 * 12 11 10 37 37 H 0.96696 * 113.99921 * 292.30540 * 14 13 12 38 38 H 0.96998 * 119.99855 * 179.97438 * 18 17 15 39 39 H 1.09000 * 110.37593 * 265.19445 * 23 10 9 40 40 H 1.09007 * 110.36745 * 27.53121 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.4990 -0.8376 1.1846 6 7 4.4502 0.0221 1.7614 7 7 5.6111 -0.4464 1.4542 8 7 5.4893 -1.5129 0.7492 9 6 4.2197 -1.7970 0.5593 10 7 3.7154 -2.8713 -0.1522 11 6 3.1274 -3.8755 0.7533 12 6 3.8415 -5.2160 0.4805 13 6 4.4010 -5.0249 -0.9566 14 8 3.3961 -5.2993 -1.9348 15 6 5.6187 -5.8836 -1.1822 16 1 6.5870 -5.4237 -1.3138 17 6 5.4967 -7.2564 -1.2207 18 7 4.3175 -7.8165 -1.0610 19 14 7.0060 -8.3209 -1.5011 20 1 8.2022 -7.4538 -1.6510 21 1 7.1947 -9.2276 -0.3404 22 1 6.8208 -9.1272 -2.7343 23 6 4.7752 -3.5218 -0.9519 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.7304 1.9373 -0.9206 29 1 1.6249 1.9747 0.8559 30 1 3.1281 1.4432 0.0646 31 1 1.5982 -1.7164 1.3000 32 1 1.7597 -0.1535 2.1364 33 1 3.2832 -3.5766 1.7898 34 1 2.0607 -3.9761 0.5529 35 1 4.6526 -5.3724 1.1917 36 1 3.1332 -6.0439 0.5140 37 1 3.1294 -6.2278 -1.9749 38 1 4.2316 -8.7823 -1.0884 39 1 4.7789 -3.1285 -1.9685 40 1 5.7484 -3.3744 -0.4835 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262212521.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:12 Heat of formation + Delta-G solvation = 53.549645 kcal Electronic energy + Delta-G solvation = -23160.539373 eV Core-core repulsion = 19819.372569 eV Total energy + Delta-G solvation = -3341.166804 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.10356 -40.40684 -38.10542 -36.85059 -34.45560 -34.11619 -33.13343 -30.67490 -30.17727 -28.36556 -28.02473 -26.86054 -24.21016 -23.90119 -22.17637 -21.41820 -21.29266 -19.31383 -18.34807 -17.83275 -17.62110 -16.94132 -16.57611 -16.20752 -15.73795 -15.19486 -15.04848 -14.77649 -14.43634 -14.02688 -13.93011 -13.76961 -13.52693 -13.23780 -13.17995 -13.02108 -12.81060 -12.75856 -12.67098 -12.43295 -12.29215 -12.25937 -12.05456 -11.91934 -11.73945 -11.36145 -11.28725 -11.23944 -10.63332 -10.14934 -9.83142 -8.26022 -6.39296 -0.09152 0.69804 1.14043 1.40539 1.45577 1.55526 2.36110 2.50005 2.99465 3.11966 3.47799 3.65111 3.71293 3.96882 3.98302 4.03751 4.05901 4.14700 4.28741 4.39434 4.53272 4.59178 4.60413 4.63898 4.76752 4.85202 4.91023 4.99324 5.03442 5.07866 5.16300 5.29639 5.31505 5.40831 5.42667 5.47207 5.76827 5.82799 6.06635 6.64532 7.32446 7.40791 7.48866 8.80529 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.026535 B = 0.004845 C = 0.004374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.939525 B = 5778.035513 C = 6400.422177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.107 4.107 3 C -0.145 4.145 4 C 0.120 3.880 5 N -0.364 5.364 6 N -0.090 5.090 7 N -0.059 5.059 8 N -0.388 5.388 9 C 0.421 3.579 10 N -0.438 5.438 11 C 0.058 3.942 12 C -0.138 4.138 13 C 0.245 3.755 14 O -0.586 6.586 15 C -0.561 4.561 16 H 0.054 0.946 17 C 0.038 3.962 18 N -0.909 5.909 19 Si 0.956 3.044 20 H -0.275 1.275 21 H -0.278 1.278 22 H -0.277 1.277 23 C 0.072 3.928 24 H 0.076 0.924 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.025 0.975 31 H 0.116 0.884 32 H 0.129 0.871 33 H 0.061 0.939 34 H 0.110 0.890 35 H 0.050 0.950 36 H 0.077 0.923 37 H 0.381 0.619 38 H 0.273 0.727 39 H 0.076 0.924 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.467 10.858 4.589 15.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.127 4.127 3 C -0.202 4.202 4 C 0.000 4.000 5 N -0.163 5.163 6 N -0.078 5.078 7 N -0.054 5.054 8 N -0.246 5.246 9 C 0.054 3.946 10 N -0.163 5.163 11 C -0.067 4.067 12 C -0.177 4.177 13 C 0.205 3.795 14 O -0.395 6.395 15 C -0.600 4.600 16 H 0.072 0.928 17 C -0.163 4.163 18 N -0.549 5.549 19 Si 0.782 3.218 20 H -0.200 1.200 21 H -0.203 1.203 22 H -0.202 1.202 23 C -0.054 4.054 24 H 0.095 0.905 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.045 0.955 31 H 0.134 0.866 32 H 0.147 0.853 33 H 0.079 0.921 34 H 0.128 0.872 35 H 0.068 0.932 36 H 0.095 0.905 37 H 0.232 0.768 38 H 0.082 0.918 39 H 0.094 0.906 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.888 12.296 4.692 16.461 hybrid contribution 0.721 -1.957 -0.036 2.086 sum -9.167 10.339 4.656 14.581 Atomic orbital electron populations 1.21718 0.90871 1.03211 1.03545 1.21480 0.98605 0.96382 0.96233 1.21829 0.99618 0.95586 1.03172 1.22620 0.70124 1.05055 1.02235 1.51635 1.10275 1.16743 1.37671 1.82337 0.92205 1.14232 1.18992 1.77834 1.16380 1.03668 1.07567 1.74825 1.16123 1.12951 1.20731 1.23515 0.86677 0.93245 0.91162 1.60573 1.30025 1.06558 1.19120 1.22981 1.00873 0.89719 0.93161 1.23177 0.99418 0.95587 0.99506 1.19637 0.86172 0.88880 0.84850 1.86081 1.59591 1.33221 1.60650 1.21773 0.94608 0.92278 1.51304 0.92769 1.25554 0.98874 0.98665 0.93169 1.69612 1.23639 1.11868 1.49736 0.85532 0.79827 0.78510 0.77916 1.19976 1.20332 1.20241 1.23057 0.91852 0.93878 0.96626 0.90481 0.91354 0.91503 0.92051 0.91599 0.90586 0.95528 0.86568 0.85344 0.92098 0.87166 0.93163 0.90453 0.76750 0.91782 0.90550 0.90591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.19 71.98 0.66 -0.98 16 2 C -0.11 -1.94 3.12 -10.79 -0.03 -1.98 16 3 C -0.14 -2.70 9.13 71.98 0.66 -2.04 16 4 C 0.12 2.29 5.87 86.38 0.51 2.80 16 5 N -0.36 -10.54 3.20 -349.64 -1.12 -11.65 16 6 N -0.09 -2.96 13.30 37.02 0.49 -2.47 16 7 N -0.06 -2.24 13.38 37.02 0.50 -1.74 16 8 N -0.39 -15.55 10.67 -58.70 -0.63 -16.18 16 9 C 0.42 14.85 6.73 260.65 1.76 16.61 16 10 N -0.44 -15.74 5.19 -696.98 -3.62 -19.35 16 11 C 0.06 1.92 5.95 86.65 0.52 2.44 16 12 C -0.14 -5.74 5.65 31.86 0.18 -5.56 16 13 C 0.25 11.49 0.89 -10.07 -0.01 11.48 16 14 O -0.59 -28.50 13.18 -148.98 -1.96 -30.46 16 15 C -0.56 -29.19 8.25 25.60 0.21 -28.98 16 16 H 0.05 2.88 7.77 -2.91 -0.02 2.86 16 17 C 0.04 1.94 5.30 84.65 0.45 2.39 16 18 N -0.91 -45.61 10.78 21.45 0.23 -45.38 16 19 Si 0.96 41.06 29.54 68.60 2.03 43.08 16 20 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 21 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 22 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 23 C 0.07 3.10 5.75 86.77 0.50 3.60 16 24 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 27 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 29 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.03 0.65 7.10 -2.39 -0.02 0.63 16 31 H 0.12 1.94 7.27 -2.39 -0.02 1.93 16 32 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.06 1.83 7.57 -2.39 -0.02 1.81 16 34 H 0.11 3.12 8.14 -2.38 -0.02 3.10 16 35 H 0.05 2.21 8.04 -2.39 -0.02 2.19 16 36 H 0.08 3.33 7.85 -2.39 -0.02 3.31 16 37 H 0.38 18.96 6.93 -74.06 -0.51 18.45 16 38 H 0.27 12.99 8.31 -92.71 -0.77 12.22 16 39 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 40 H 0.08 3.44 6.66 -2.38 -0.02 3.42 16 Total: -1.00 -58.47 327.14 1.85 -56.62 By element: Atomic # 1 Polarization: 27.22 SS G_CDS: 0.53 Total: 27.75 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: 5.39 Total: -0.22 kcal Atomic # 7 Polarization: -92.63 SS G_CDS: -4.14 Total: -96.77 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -1.96 Total: -30.46 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.08 kcal Total: -58.47 1.85 -56.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262212521.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.169 kcal (2) G-P(sol) polarization free energy of solvation -58.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds