Wall clock time and date at job start Tue Mar 31 2020 05:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50691 * 120.00309 * 2 1 4 4 N 1.46888 * 109.47556 * 123.41701 * 3 2 1 5 5 C 1.46902 * 111.00173 * 298.86282 * 4 3 2 6 6 C 1.50708 * 109.46869 * 287.73891 * 5 4 3 7 7 H 1.07999 * 119.99970 * 3.90318 * 6 5 4 8 8 C 1.37877 * 120.00046 * 183.90337 * 6 5 4 9 9 N 1.31517 * 119.99874 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99963 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47317 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.46944 * 120.00291 * 10 8 6 13 13 H 1.48505 * 109.47143 * 240.00162 * 10 8 6 14 14 C 1.38382 * 111.00471 * 62.81435 * 4 3 2 15 15 N 1.31477 * 126.43808 * 255.69670 * 14 4 3 16 16 N 1.28422 * 110.50580 * 179.81022 * 15 14 4 17 17 N 1.28913 * 110.31609 * 0.45514 * 16 15 14 18 18 N 1.35306 * 126.44084 * 75.99780 * 14 4 3 19 19 C 1.46504 * 127.38149 * 359.97438 * 18 14 4 20 20 C 1.52997 * 109.47060 * 95.89958 * 19 18 14 21 21 O 1.42898 * 109.47461 * 180.02562 * 20 19 18 22 22 C 1.42894 * 114.00554 * 179.97438 * 21 20 19 23 23 C 1.52991 * 109.47614 * 179.97438 * 22 21 20 24 24 H 1.07997 * 120.00256 * 180.02562 * 1 2 3 25 25 H 1.07995 * 119.99703 * 359.97438 * 1 2 3 26 26 H 1.08004 * 119.99594 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.47073 * 243.41891 * 3 2 1 28 28 H 1.08997 * 109.47177 * 3.41121 * 3 2 1 29 29 H 1.09004 * 109.47251 * 47.72977 * 5 4 3 30 30 H 1.08998 * 109.47872 * 167.73904 * 5 4 3 31 31 H 0.97000 * 119.99667 * 179.97438 * 9 8 6 32 32 H 1.08997 * 109.47526 * 215.90540 * 19 18 14 33 33 H 1.09003 * 109.47046 * 335.90366 * 19 18 14 34 34 H 1.09008 * 109.47395 * 300.00125 * 20 19 18 35 35 H 1.08999 * 109.47017 * 59.99800 * 20 19 18 36 36 H 1.09001 * 109.47018 * 300.00363 * 22 21 20 37 37 H 1.09002 * 109.47070 * 59.99819 * 22 21 20 38 38 H 1.08997 * 109.47275 * 60.00209 * 23 22 21 39 39 H 1.08997 * 109.47499 * 180.02562 * 23 22 21 40 40 H 1.09001 * 109.47230 * 300.00239 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9690 1.3477 1.1559 5 6 2.2185 1.2631 2.4159 6 6 1.4892 2.5602 2.6543 7 1 1.5234 3.3434 1.9114 8 6 0.7783 2.7471 3.8208 9 7 0.7370 1.7936 4.7257 10 14 -0.1250 4.3552 4.1166 11 1 0.0777 5.2578 2.9550 12 1 -1.5754 4.0845 4.2853 13 1 0.4040 5.0015 5.3445 14 6 3.9209 0.3464 1.0776 15 7 3.9383 -0.7705 1.7710 16 7 4.9590 -1.4819 1.4525 17 7 5.6621 -0.8795 0.5555 18 7 5.0118 0.3354 0.2772 19 6 5.4262 1.3680 -0.6759 20 6 6.4512 2.2911 -0.0141 21 8 6.8549 3.2987 -0.9435 22 6 7.8160 4.2188 -0.4223 23 6 8.1736 5.2466 -1.4976 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5399 0.9353 0.0004 26 1 1.8500 -0.9354 0.0004 27 1 2.6435 1.3897 -0.9191 28 1 1.3569 2.1326 0.0611 29 1 1.4981 0.4472 2.3557 30 1 2.9091 1.0781 3.2386 31 1 0.2372 1.9253 5.5465 32 1 5.8734 0.8965 -1.5509 33 1 4.5568 1.9503 -0.9815 34 1 6.0039 2.7628 0.8610 35 1 7.3205 1.7089 0.2916 36 1 7.3967 4.7300 0.4444 37 1 8.7139 3.6770 -0.1251 38 1 7.2760 5.7886 -1.7951 39 1 8.9070 5.9482 -1.1002 40 1 8.5930 4.7350 -2.3639 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262214777.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:42 Heat of formation + Delta-G solvation = 103.756088 kcal Electronic energy + Delta-G solvation = -22445.646204 eV Core-core repulsion = 19106.656515 eV Total energy + Delta-G solvation = -3338.989689 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.54171 -38.36014 -37.85459 -35.10425 -33.12498 -32.63298 -31.76373 -30.55462 -29.19928 -27.47540 -25.55455 -24.02001 -23.01886 -22.99239 -21.80529 -20.75113 -19.50916 -17.45688 -16.57774 -16.46458 -16.35341 -16.03592 -15.85183 -15.09698 -14.75136 -14.47552 -14.38060 -13.89196 -13.41434 -12.80331 -12.74489 -12.50545 -12.42889 -12.37275 -11.94469 -11.68704 -11.39625 -11.35535 -11.19223 -11.04921 -10.90159 -10.71106 -10.45875 -10.33498 -10.12728 -9.91284 -9.80549 -9.49970 -9.01370 -8.56680 -8.03608 -6.14287 -4.19167 1.36451 1.95889 2.56723 2.84926 3.23468 3.31392 3.34013 3.50784 4.13004 4.39827 4.45457 4.71275 4.83419 4.97777 5.03201 5.09730 5.18336 5.19384 5.22582 5.32732 5.41361 5.43348 5.52571 5.63167 5.68503 5.83325 5.88230 5.89113 6.11591 6.22157 6.26824 6.87129 6.90779 6.94990 7.04847 7.17479 7.50173 7.60950 7.89474 8.18398 8.83461 8.99131 9.44724 10.95811 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.012153 B = 0.005609 C = 0.004481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.416629 B = 4990.702103 C = 6246.488867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.191 4.191 3 C 0.095 3.905 4 N -0.452 5.452 5 C 0.203 3.797 6 C -0.519 4.519 7 H 0.066 0.934 8 C 0.063 3.937 9 N -0.886 5.886 10 Si 0.899 3.101 11 H -0.272 1.272 12 H -0.283 1.283 13 H -0.283 1.283 14 C 0.445 3.555 15 N -0.350 5.350 16 N -0.037 5.037 17 N -0.107 5.107 18 N -0.391 5.391 19 C 0.137 3.863 20 C 0.052 3.948 21 O -0.386 6.386 22 C 0.059 3.941 23 C -0.150 4.150 24 H 0.093 0.907 25 H 0.103 0.897 26 H 0.099 0.901 27 H 0.068 0.932 28 H 0.111 0.889 29 H 0.026 0.974 30 H 0.043 0.957 31 H 0.264 0.736 32 H 0.105 0.895 33 H 0.114 0.886 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.053 0.947 37 H 0.049 0.951 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.573 3.712 -12.663 15.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.211 4.211 3 C -0.031 4.031 4 N -0.176 5.176 5 C 0.080 3.920 6 C -0.558 4.558 7 H 0.084 0.916 8 C -0.141 4.141 9 N -0.524 5.524 10 Si 0.727 3.273 11 H -0.196 1.196 12 H -0.209 1.209 13 H -0.209 1.209 14 C 0.080 3.920 15 N -0.208 5.208 16 N -0.033 5.033 17 N -0.094 5.094 18 N -0.192 5.192 19 C 0.013 3.987 20 C -0.027 4.027 21 O -0.304 6.304 22 C -0.018 4.018 23 C -0.208 4.208 24 H 0.111 0.889 25 H 0.121 0.879 26 H 0.117 0.883 27 H 0.086 0.914 28 H 0.129 0.871 29 H 0.044 0.956 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.124 0.876 33 H 0.132 0.868 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.220 2.949 -12.300 15.652 hybrid contribution -0.844 1.036 0.359 1.383 sum 8.376 3.985 -11.942 15.121 Atomic orbital electron populations 1.23797 0.95670 1.01832 0.98220 1.23379 0.97111 0.98503 1.02079 1.21412 0.94361 0.96815 0.90543 1.59579 1.15119 1.34143 1.08785 1.19997 0.92493 0.98372 0.81125 1.21019 1.30696 1.00106 1.03981 0.91607 1.24935 0.96497 0.96923 0.95696 1.69986 1.41315 1.32548 1.08586 0.86423 0.79367 0.83214 0.78301 1.19608 1.20911 1.20934 1.23796 0.90169 0.90677 0.87385 1.75149 1.16759 1.02324 1.26601 1.77867 0.99422 1.20882 1.05158 1.82435 1.18596 0.91805 1.16559 1.51240 1.18023 1.17139 1.32818 1.21497 1.00392 0.86866 0.89901 1.22664 0.97327 0.89927 0.92735 1.87761 1.61455 1.42039 1.39183 1.22492 0.91215 0.90838 0.97226 1.21740 1.02080 0.98009 0.98936 0.88885 0.87893 0.88320 0.91405 0.87131 0.95626 0.93859 0.92638 0.87638 0.86821 0.91595 0.92382 0.92879 0.93309 0.91631 0.91023 0.91889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 14.31 29.01 0.42 -2.08 16 2 C -0.19 -3.27 7.52 -36.03 -0.27 -3.54 16 3 C 0.09 1.60 5.50 -4.99 -0.03 1.57 16 4 N -0.45 -9.06 4.63 -177.60 -0.82 -9.88 16 5 C 0.20 5.02 4.07 -4.97 -0.02 5.00 16 6 C -0.52 -13.43 8.64 -34.44 -0.30 -13.73 16 7 H 0.07 1.64 7.40 -52.49 -0.39 1.25 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 9 N -0.89 -25.36 13.29 55.43 0.74 -24.62 16 10 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 11 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 14 C 0.44 8.76 5.88 -320.41 -1.89 6.87 16 15 N -0.35 -7.68 11.33 30.10 0.34 -7.34 16 16 N -0.04 -0.76 13.38 60.35 0.81 0.04 16 17 N -0.11 -1.96 13.93 60.35 0.84 -1.12 16 18 N -0.39 -6.56 3.69 -61.86 -0.23 -6.79 16 19 C 0.14 1.74 6.85 -4.04 -0.03 1.71 16 20 C 0.05 0.65 6.26 37.16 0.23 0.88 16 21 O -0.39 -4.60 10.34 -35.23 -0.36 -4.97 16 22 C 0.06 0.57 6.66 37.15 0.25 0.82 16 23 C -0.15 -1.17 10.28 37.15 0.38 -0.79 16 24 H 0.09 1.34 8.06 -52.49 -0.42 0.92 16 25 H 0.10 1.57 7.84 -52.49 -0.41 1.16 16 26 H 0.10 1.80 7.70 -52.48 -0.40 1.39 16 27 H 0.07 0.94 6.65 -51.93 -0.35 0.60 16 28 H 0.11 1.88 6.85 -51.93 -0.36 1.52 16 29 H 0.03 0.69 6.75 -51.93 -0.35 0.33 16 30 H 0.04 1.22 7.83 -51.93 -0.41 0.81 16 31 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.11 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.11 1.35 6.48 -51.93 -0.34 1.02 16 34 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 341.86 15.07 5.15 5.15 Total: -1.00 -30.05 341.86 -5.84 -35.89 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -5.94 Total: -0.07 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -1.35 Total: -1.70 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: 1.68 Total: -49.71 kcal Atomic # 8 Polarization: -4.60 SS G_CDS: -0.36 Total: -4.97 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.05 -5.84 -35.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262214777.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.650 kcal (2) G-P(sol) polarization free energy of solvation -30.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds