Wall clock time and date at job start Tue Mar 31 2020 05:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 113.99936 * 2 1 4 4 C 1.52999 * 109.47092 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47054 * 62.84702 * 4 3 2 6 6 C 1.36930 * 120.00137 * 93.45546 * 5 4 3 7 7 H 1.07996 * 119.99431 * 217.83536 * 6 5 4 8 8 C 1.38797 * 120.00154 * 37.55627 * 6 5 4 9 9 N 1.31562 * 120.00364 * 204.95593 * 8 6 5 10 10 Si 1.86807 * 120.00069 * 24.96044 * 8 6 5 11 11 H 1.48506 * 109.46723 * 4.41529 * 10 8 6 12 12 H 1.48493 * 109.47257 * 124.41417 * 10 8 6 13 13 H 1.48495 * 109.46880 * 244.42110 * 10 8 6 14 14 C 1.38227 * 119.99611 * 273.44672 * 5 4 3 15 15 N 1.31564 * 126.46196 * 277.41864 * 14 5 4 16 16 N 1.28410 * 110.50174 * 179.85724 * 15 14 5 17 17 N 1.28902 * 110.35095 * 0.42077 * 16 15 14 18 18 N 1.35436 * 126.45402 * 97.73720 * 14 5 4 19 19 C 1.46494 * 127.39004 * 359.93913 * 18 14 5 20 20 C 1.53004 * 109.47272 * 100.11390 * 19 18 14 21 21 C 1.53775 * 113.61551 * 272.04645 * 20 19 18 22 22 C 1.53780 * 87.08241 * 220.02166 * 21 20 19 23 23 C 1.53775 * 87.08122 * 25.43239 * 22 21 20 24 24 H 1.09003 * 109.47352 * 60.00176 * 1 2 3 25 25 H 1.08999 * 109.46864 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47064 * 299.99924 * 1 2 3 27 27 H 1.09002 * 109.47306 * 60.00014 * 3 2 1 28 28 H 1.09007 * 109.46940 * 299.99936 * 3 2 1 29 29 H 1.09000 * 109.47058 * 302.84164 * 4 3 2 30 30 H 1.09002 * 109.47003 * 182.84618 * 4 3 2 31 31 H 0.97001 * 119.99742 * 0.02562 * 9 8 6 32 32 H 1.09003 * 109.47319 * 220.11764 * 19 18 14 33 33 H 1.09004 * 109.47131 * 340.11569 * 19 18 14 34 34 H 1.08996 * 112.84634 * 43.35429 * 20 19 18 35 35 H 1.09001 * 113.61667 * 334.56713 * 21 20 19 36 36 H 1.09000 * 113.61383 * 105.46915 * 21 20 19 37 37 H 1.09004 * 113.61194 * 270.88372 * 22 21 20 38 38 H 1.08993 * 113.61463 * 139.98311 * 22 21 20 39 39 H 1.09000 * 113.61514 * 220.02408 * 23 22 21 40 40 H 1.08997 * 113.69128 * 89.13000 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9720 0.5180 -1.2299 6 6 4.3270 1.2620 -2.3233 7 1 4.0678 0.9219 -3.3150 8 6 5.0148 2.4559 -2.1567 9 7 4.9370 3.3938 -3.0761 10 14 6.0512 2.7313 -0.6271 11 1 6.0596 1.4942 0.1944 12 1 7.4410 3.0705 -1.0253 13 1 5.4767 3.8479 0.1656 14 6 4.0256 -0.8621 -1.2859 15 7 5.0047 -1.6248 -0.8494 16 7 4.7348 -2.8636 -1.0530 17 7 3.5892 -2.9836 -1.6317 18 7 3.0828 -1.6837 -1.8060 19 6 1.8083 -1.3001 -2.4180 20 6 1.9437 -1.3334 -3.9416 21 6 2.4491 -0.0119 -4.5441 22 6 1.4363 -0.2335 -5.6799 23 6 0.6216 -1.0747 -4.6833 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8901 29 1 3.8540 0.6003 0.8625 30 1 3.9787 2.1792 0.0504 31 1 4.3986 3.2509 -3.8702 32 1 1.0312 -1.9983 -2.1069 33 1 1.5406 -0.2928 -2.0989 34 1 2.4806 -2.2117 -4.2997 35 1 2.2306 0.8606 -3.9284 36 1 3.4880 -0.0506 -4.8717 37 1 1.8354 -0.8103 -6.5143 38 1 0.9305 0.6781 -5.9978 39 1 0.1851 -1.9714 -5.1232 40 1 -0.0971 -0.4940 -4.1050 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262215782.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:13 Heat of formation + Delta-G solvation = 116.977424 kcal Electronic energy + Delta-G solvation = -24181.285090 eV Core-core repulsion = 20842.868720 eV Total energy + Delta-G solvation = -3338.416369 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.88915 -38.80148 -37.94539 -36.08189 -33.86894 -32.17401 -30.80875 -29.01127 -28.34314 -26.15903 -25.53689 -24.22281 -23.56998 -22.68692 -21.58242 -20.28532 -19.30784 -17.86243 -16.95430 -16.33057 -15.97545 -15.63684 -15.36088 -15.08572 -14.77741 -14.56639 -14.03548 -13.66337 -13.31770 -12.88602 -12.63080 -12.29509 -12.22119 -12.04879 -11.73411 -11.55621 -11.44732 -11.30936 -10.94512 -10.75775 -10.48716 -10.28235 -10.12802 -10.01976 -9.84595 -9.53435 -9.43710 -9.35247 -9.16833 -8.79826 -7.69607 -6.67073 -3.92489 1.98358 2.66656 3.25908 3.30508 3.44061 3.61888 4.00186 4.29243 4.35761 4.70101 4.78559 4.84589 4.98308 5.01995 5.27404 5.30505 5.35598 5.47353 5.60065 5.63794 5.65986 5.69438 5.70772 5.76791 5.93256 5.98001 6.01321 6.03836 6.09281 6.27672 6.36163 6.38735 6.43539 6.47796 6.70913 6.93770 7.34854 7.88960 8.11010 8.59822 9.16776 9.47871 9.66499 10.70149 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.013308 B = 0.008792 C = 0.007945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.463125 B = 3183.819619 C = 3523.536133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.387 6.387 3 C 0.037 3.963 4 C 0.153 3.847 5 N -0.506 5.506 6 C -0.391 4.391 7 H 0.091 0.909 8 C 0.022 3.978 9 N -0.884 5.884 10 Si 1.034 2.966 11 H -0.268 1.268 12 H -0.290 1.290 13 H -0.287 1.287 14 C 0.523 3.477 15 N -0.359 5.359 16 N -0.061 5.061 17 N -0.124 5.124 18 N -0.375 5.375 19 C 0.149 3.851 20 C -0.130 4.130 21 C -0.126 4.126 22 C -0.144 4.144 23 C -0.127 4.127 24 H 0.039 0.961 25 H 0.078 0.922 26 H 0.038 0.962 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.271 0.729 32 H 0.081 0.919 33 H 0.115 0.885 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.786 -2.977 1.095 12.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.306 6.306 3 C -0.042 4.042 4 C 0.028 3.972 5 N -0.229 5.229 6 C -0.517 4.517 7 H 0.108 0.892 8 C -0.186 4.186 9 N -0.518 5.518 10 Si 0.863 3.137 11 H -0.193 1.193 12 H -0.217 1.217 13 H -0.214 1.214 14 C 0.160 3.840 15 N -0.217 5.217 16 N -0.057 5.057 17 N -0.111 5.111 18 N -0.175 5.175 19 C 0.026 3.974 20 C -0.150 4.150 21 C -0.164 4.164 22 C -0.181 4.181 23 C -0.165 4.165 24 H 0.058 0.942 25 H 0.097 0.903 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.101 0.899 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.132 0.868 34 H 0.108 0.892 35 H 0.117 0.883 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.062 -3.232 2.056 10.766 hybrid contribution -1.753 -0.092 -1.134 2.090 sum -11.815 -3.324 0.922 12.308 Atomic orbital electron populations 1.22698 0.82193 1.02037 0.99790 1.87953 1.18740 1.28777 1.95109 1.23355 0.96400 0.84189 1.00217 1.21397 0.90362 0.97785 0.87632 1.40873 1.74025 0.94082 1.13913 1.20522 1.39536 1.05016 0.86665 0.89154 1.26279 0.95798 0.92347 1.04127 1.70923 1.39488 1.30933 1.10419 0.84137 0.77442 0.76173 0.75987 1.19273 1.21670 1.21407 1.21793 0.84095 0.89079 0.89037 1.75001 1.23789 0.96738 1.26213 1.77816 1.06725 1.12309 1.08837 1.82256 1.08312 0.99000 1.21552 1.52072 1.17108 1.05705 1.42623 1.21904 0.81199 1.02865 0.91439 1.23005 0.98546 0.99932 0.93494 1.23136 0.99017 0.97287 0.96920 1.22820 0.98351 0.99923 0.97014 1.22838 0.95700 1.00073 0.97890 0.94249 0.90307 0.94375 0.93413 0.92094 0.92077 0.89893 0.91850 0.90067 0.86758 0.89155 0.88306 0.91511 0.90653 0.91454 0.91542 0.90058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.35 101.05 1.05 1.39 16 2 O -0.39 -6.13 7.04 -35.23 -0.25 -6.38 16 3 C 0.04 0.59 5.97 37.16 0.22 0.82 16 4 C 0.15 3.01 4.56 -4.04 -0.02 2.99 16 5 N -0.51 -11.31 2.07 -116.59 -0.24 -11.55 16 6 C -0.39 -9.56 9.39 -15.07 -0.14 -9.70 16 7 H 0.09 2.27 4.34 -52.49 -0.23 2.05 16 8 C 0.02 0.57 5.23 -17.46 -0.09 0.47 16 9 N -0.88 -23.91 13.70 55.49 0.76 -23.15 16 10 Si 1.03 23.67 25.54 -169.99 -4.34 19.33 16 11 H -0.27 -6.06 6.60 56.52 0.37 -5.69 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 13 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 14 C 0.52 11.93 6.86 -320.35 -2.20 9.74 16 15 N -0.36 -8.84 12.20 30.10 0.37 -8.47 16 16 N -0.06 -1.42 13.38 60.35 0.81 -0.61 16 17 N -0.12 -2.67 13.93 60.35 0.84 -1.83 16 18 N -0.37 -7.60 3.55 -61.85 -0.22 -7.82 16 19 C 0.15 2.42 5.08 -4.04 -0.02 2.40 16 20 C -0.13 -1.97 3.96 -89.81 -0.36 -2.32 16 21 C -0.13 -2.07 5.87 -25.92 -0.15 -2.22 16 22 C -0.14 -1.85 8.08 -25.92 -0.21 -2.06 16 23 C -0.13 -1.50 7.64 -25.92 -0.20 -1.70 16 24 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.06 1.19 8.07 -51.93 -0.42 0.77 16 30 H 0.08 1.65 3.94 -51.93 -0.20 1.45 16 31 H 0.27 7.21 8.73 -40.82 -0.36 6.85 16 32 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.11 1.89 5.12 -51.93 -0.27 1.62 16 34 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 35 H 0.10 1.79 6.96 -51.93 -0.36 1.43 16 36 H 0.07 1.26 7.39 -51.93 -0.38 0.88 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 LS Contribution 319.27 15.07 4.81 4.81 Total: -1.00 -28.88 319.27 -5.27 -34.15 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -5.69 Total: 1.71 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -2.12 Total: -0.19 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: 2.31 Total: -53.43 kcal Atomic # 8 Polarization: -6.13 SS G_CDS: -0.25 Total: -6.38 kcal Atomic # 14 Polarization: 23.67 SS G_CDS: -4.34 Total: 19.33 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.88 -5.27 -34.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262215782.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.125 kcal (2) G-P(sol) polarization free energy of solvation -28.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds