Wall clock time and date at job start Tue Mar 31 2020 05:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46641 * 2 1 4 4 N 1.46499 * 109.47070 * 239.99909 * 2 1 3 5 5 C 1.34777 * 120.00199 * 85.00207 * 4 2 1 6 6 O 1.21283 * 119.99750 * 359.97438 * 5 4 2 7 7 C 1.50702 * 119.99928 * 180.27479 * 5 4 2 8 8 C 1.52996 * 109.47159 * 179.72352 * 7 5 4 9 9 C 1.52994 * 109.47118 * 179.97438 * 8 7 5 10 10 C 1.53003 * 109.46834 * 179.97438 * 9 8 7 11 11 C 1.50702 * 109.46874 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00298 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00158 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99979 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00174 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47438 * 59.99670 * 15 13 11 17 17 H 1.48511 * 109.47138 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.46866 * 299.99549 * 15 13 11 19 19 C 1.50697 * 109.46811 * 119.99346 * 2 1 3 20 20 N 1.31072 * 126.66042 * 75.03245 * 19 2 1 21 21 N 1.28839 * 107.99202 * 179.97438 * 20 19 2 22 22 N 1.28731 * 109.39784 * 359.97438 * 21 20 19 23 23 N 1.29020 * 108.81087 * 359.74320 * 22 21 20 24 24 C 1.46497 * 126.44233 * 180.24278 * 23 22 21 25 25 H 1.08998 * 109.46925 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47598 * 300.00373 * 1 2 3 27 27 H 1.09005 * 109.47473 * 60.00264 * 1 2 3 28 28 H 0.97000 * 119.99484 * 264.99304 * 4 2 1 29 29 H 1.09004 * 109.46965 * 299.72211 * 7 5 4 30 30 H 1.08994 * 109.46990 * 59.72065 * 7 5 4 31 31 H 1.09004 * 109.47066 * 299.99797 * 8 7 5 32 32 H 1.09000 * 109.47234 * 59.99288 * 8 7 5 33 33 H 1.08998 * 109.46965 * 299.99512 * 9 8 7 34 34 H 1.09003 * 109.47184 * 60.00331 * 9 8 7 35 35 H 1.08990 * 109.47421 * 299.99996 * 10 9 8 36 36 H 1.09002 * 109.47073 * 60.00711 * 10 9 8 37 37 H 0.96995 * 120.00587 * 179.97438 * 14 13 11 38 38 H 1.09000 * 109.47523 * 270.18282 * 24 23 22 39 39 H 1.09000 * 109.47191 * 30.18554 * 24 23 22 40 40 H 1.08997 * 109.47151 * 150.18296 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8582 1.1583 -2.4117 7 6 2.6435 -0.7303 -3.5891 8 6 2.6898 0.2514 -4.7617 9 6 3.1944 -0.4713 -6.0122 10 6 3.2400 0.5103 -7.1850 11 6 3.7377 -0.2014 -8.4166 12 1 3.9952 -1.2491 -8.3679 13 6 3.8642 0.4850 -9.6057 14 7 3.5501 1.7607 -9.6651 15 14 4.4804 -0.3973 -11.1325 16 1 3.5628 -1.5178 -11.4609 17 1 4.5259 0.5558 -12.2705 18 1 5.8429 -0.9311 -10.8797 19 6 2.0322 -0.7103 1.2305 20 7 2.0370 -2.0041 1.4402 21 7 2.5448 -2.2166 2.6051 22 7 2.8645 -1.0920 3.1438 23 7 2.5694 -0.1397 2.3249 24 6 2.7759 1.2936 2.5464 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 2.2491 -1.6318 -1.1525 29 1 3.6436 -1.1225 -3.4039 30 1 1.9697 -1.5525 -3.8299 31 1 1.6897 0.6435 -4.9469 32 1 3.3636 1.0736 -4.5208 33 1 4.1945 -0.8631 -5.8267 34 1 2.5208 -1.2937 -6.2533 35 1 2.2399 0.9017 -7.3703 36 1 3.9134 1.3329 -6.9442 37 1 3.6395 2.2438 -10.5015 38 1 1.8926 1.7187 3.0231 39 1 3.6427 1.4406 3.1907 40 1 2.9461 1.7882 1.5901 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262806408.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:52 Heat of formation + Delta-G solvation = 57.006198 kcal Electronic energy + Delta-G solvation = -21129.213638 eV Core-core repulsion = 17788.196721 eV Total energy + Delta-G solvation = -3341.016917 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.67393 -40.02089 -36.58791 -36.04691 -34.88301 -32.91989 -32.54961 -30.91335 -29.44727 -28.93053 -25.92191 -25.08093 -23.85808 -22.66698 -21.54341 -20.41340 -20.00276 -18.17114 -17.74926 -17.19556 -16.70617 -16.13530 -15.74872 -15.07315 -14.62861 -14.43646 -14.32740 -14.20175 -13.83595 -13.53026 -13.15151 -12.76834 -12.64497 -12.52125 -12.26325 -12.00420 -11.72057 -11.62493 -11.52637 -11.37364 -10.97898 -10.64445 -10.55362 -10.55021 -10.42875 -9.98384 -9.63931 -9.52134 -9.24359 -9.00529 -8.30765 -5.95825 -3.98313 0.68562 1.42024 1.74796 2.51751 2.82408 3.26413 3.35285 3.39608 3.41999 3.73180 4.10067 4.29955 4.48138 4.50131 4.59844 4.69955 4.83028 4.86774 5.14078 5.20281 5.26942 5.32411 5.35755 5.39630 5.55759 5.72442 5.81341 6.01641 6.10802 6.26946 6.51716 6.81437 6.98778 7.17128 7.22934 7.73012 7.88859 8.03065 8.05589 8.12962 8.47296 9.09204 9.65386 11.15486 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.040138 B = 0.002398 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.433853 B =11674.057325 C =11891.230348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.231 3.769 3 H 0.111 0.889 4 N -0.730 5.730 5 C 0.520 3.480 6 O -0.532 6.532 7 C -0.138 4.138 8 C -0.103 4.103 9 C -0.111 4.111 10 C 0.020 3.980 11 C -0.521 4.521 12 H 0.054 0.946 13 C 0.055 3.945 14 N -0.896 5.896 15 Si 0.891 3.109 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.277 1.277 19 C 0.175 3.825 20 N -0.292 5.292 21 N -0.071 5.071 22 N -0.091 5.091 23 N -0.301 5.301 24 C 0.073 3.927 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.084 0.916 28 H 0.411 0.589 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.016 0.984 36 H 0.015 0.985 37 H 0.260 0.740 38 H 0.102 0.898 39 H 0.111 0.889 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.283 -1.387 25.825 26.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.122 3.878 3 H 0.129 0.871 4 N -0.385 5.385 5 C 0.308 3.692 6 O -0.407 6.407 7 C -0.178 4.178 8 C -0.141 4.141 9 C -0.149 4.149 10 C -0.017 4.017 11 C -0.559 4.559 12 H 0.072 0.928 13 C -0.145 4.145 14 N -0.535 5.535 15 Si 0.719 3.281 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.104 4.104 20 N -0.142 5.142 21 N -0.065 5.065 22 N -0.077 5.077 23 N -0.103 5.103 24 C -0.069 4.069 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.103 0.897 28 H 0.247 0.753 29 H 0.111 0.889 30 H 0.113 0.887 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.070 0.930 38 H 0.121 0.879 39 H 0.130 0.870 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.217 -1.528 26.436 26.814 hybrid contribution 0.386 0.030 -1.083 1.150 sum -3.830 -1.499 25.353 25.684 Atomic orbital electron populations 1.22202 0.91982 1.04008 1.03715 1.19154 0.95332 0.95429 0.77846 0.87094 1.46132 1.69093 1.14800 1.08505 1.21214 0.76384 0.87426 0.84199 1.90711 1.49088 1.16113 1.84820 1.21818 1.02815 1.00612 0.92541 1.21463 1.02542 0.97178 0.92907 1.21656 0.99270 0.99298 0.94648 1.19088 0.97206 0.94109 0.91264 1.21251 1.43757 0.96330 0.94593 0.92796 1.25037 0.95660 0.94873 0.98974 1.69958 1.48754 1.08233 1.26591 0.86673 0.79384 0.79409 0.82598 1.20258 1.21327 1.20289 1.26175 1.00028 0.90687 0.93537 1.74970 1.17560 1.11312 1.10348 1.78655 1.11300 1.15308 1.01244 1.78923 1.18776 0.92243 1.17751 1.48428 1.39411 1.10708 1.11734 1.22545 1.05956 0.72269 1.06093 0.90893 0.91441 0.89692 0.75345 0.88913 0.88669 0.91679 0.91802 0.93446 0.93375 0.96580 0.96630 0.92986 0.87911 0.87024 0.87250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.14 9.47 37.16 0.35 -0.78 16 2 C 0.23 1.81 2.96 -69.08 -0.20 1.61 16 3 H 0.11 0.78 6.29 -51.93 -0.33 0.46 16 4 N -0.73 -6.67 5.07 -54.93 -0.28 -6.95 16 5 C 0.52 6.27 7.79 -10.98 -0.09 6.18 16 6 O -0.53 -8.17 15.65 5.55 0.09 -8.08 16 7 C -0.14 -1.68 5.70 -27.88 -0.16 -1.84 16 8 C -0.10 -1.73 4.50 -26.74 -0.12 -1.85 16 9 C -0.11 -2.22 5.15 -26.73 -0.14 -2.36 16 10 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 11 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 12 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 15 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 C 0.17 1.52 6.91 -155.43 -1.07 0.45 16 20 N -0.29 -3.30 12.09 32.70 0.40 -2.90 16 21 N -0.07 -0.89 13.43 60.35 0.81 -0.07 16 22 N -0.09 -0.96 13.29 60.35 0.80 -0.16 16 23 N -0.30 -2.28 3.75 -65.03 -0.24 -2.52 16 24 C 0.07 0.18 11.21 59.85 0.67 0.85 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.41 3.34 8.38 -40.82 -0.34 3.00 16 29 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.06 1.16 8.10 -51.93 -0.42 0.74 16 32 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.10 0.05 8.14 -51.93 -0.42 -0.38 16 39 H 0.11 0.14 8.14 -51.93 -0.42 -0.29 16 40 H 0.11 0.13 7.01 -51.93 -0.36 -0.23 16 LS Contribution 344.14 15.07 5.19 5.19 Total: -1.00 -35.71 344.14 -4.90 -40.61 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: -6.06 Total: -4.26 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: -1.31 Total: -11.05 kcal Atomic # 7 Polarization: -41.41 SS G_CDS: 2.22 Total: -39.18 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: 0.09 Total: -8.08 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.71 -4.90 -40.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262806408.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.618 kcal (2) G-P(sol) polarization free energy of solvation -35.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds