Wall clock time and date at job start Tue Mar 31 2020 05:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 N 1.30712 * 125.52347 * 299.69131 * 4 2 1 6 6 N 1.40447 * 106.79115 * 179.86008 * 5 4 2 7 7 H 0.96998 * 126.82161 * 180.16483 * 6 5 4 8 8 C 1.34430 * 106.35370 * 0.39838 * 6 5 4 9 9 C 1.50693 * 125.96034 * 179.77926 * 8 6 5 10 10 N 1.46504 * 109.47422 * 94.97739 * 9 8 6 11 11 C 1.34766 * 120.00188 * 180.02562 * 10 9 8 12 12 O 1.21588 * 120.00190 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99841 * 180.02562 * 11 10 9 14 14 C 1.46504 * 120.00207 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47634 * 179.97438 * 14 13 11 16 16 C 1.50695 * 109.47172 * 179.97438 * 15 14 13 17 17 H 1.07992 * 120.00344 * 0.02562 * 16 15 14 18 18 C 1.37886 * 119.99810 * 180.02562 * 16 15 14 19 19 N 1.31509 * 119.99712 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 119.99906 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47524 * 59.99693 * 20 18 16 22 22 H 1.48499 * 109.47086 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47315 * 299.99660 * 20 18 16 24 24 N 1.30830 * 108.07545 * 359.75741 * 8 6 5 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 29 29 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 31 31 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 32 32 H 1.09001 * 109.46934 * 214.97504 * 9 8 6 33 33 H 1.09001 * 109.47572 * 334.97778 * 9 8 6 34 34 H 0.97000 * 119.99504 * 359.97438 * 10 9 8 35 35 H 0.97004 * 120.00541 * 0.02562 * 13 11 10 36 36 H 1.09000 * 109.46983 * 300.00361 * 14 13 11 37 37 H 1.09000 * 109.46851 * 59.99722 * 14 13 11 38 38 H 1.08995 * 109.46955 * 300.00268 * 15 14 13 39 39 H 1.09006 * 109.46360 * 59.99971 * 15 14 13 40 40 H 0.97000 * 119.99992 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 7 1.7887 -0.3561 2.4648 6 7 2.4401 -1.2871 3.2903 7 1 2.4480 -1.2985 4.2602 8 6 3.0546 -2.1562 2.4693 9 6 3.8888 -3.3369 2.8946 10 7 3.0551 -4.5413 2.9171 11 6 3.5916 -5.7258 3.2710 12 8 4.7678 -5.7950 3.5712 13 7 2.8246 -6.8339 3.2912 14 6 3.4080 -8.1217 3.6754 15 6 2.3315 -9.2073 3.6163 16 6 2.9318 -10.5320 4.0108 17 1 3.9764 -10.5935 4.2775 18 6 2.1471 -11.6656 4.0314 19 7 0.8748 -11.5906 3.7071 20 14 2.8910 -13.3076 4.5211 21 1 3.4256 -13.2162 5.9035 22 1 1.8464 -14.3614 4.4625 23 1 3.9925 -13.6506 3.5861 24 7 2.8016 -1.7984 1.2366 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9562 0.8900 32 1 4.7084 -3.4755 2.1895 33 1 4.2931 -3.1563 3.8906 34 1 2.1166 -4.4860 2.6780 35 1 1.8865 -6.7789 3.0506 36 1 4.2165 -8.3735 2.9891 37 1 3.8004 -8.0545 4.6900 38 1 1.5233 -8.9552 4.3028 39 1 1.9387 -9.2745 2.6016 40 1 0.3229 -12.3882 3.7212 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001312486988.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:23 Heat of formation + Delta-G solvation = 33.295811 kcal Electronic energy + Delta-G solvation = -20796.058576 eV Core-core repulsion = 17454.013499 eV Total energy + Delta-G solvation = -3342.045076 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.58610 -39.65214 -36.31083 -35.25300 -34.51527 -32.87085 -32.56628 -31.30000 -29.55833 -27.52060 -27.01948 -24.53120 -24.08346 -21.49029 -21.08117 -20.67411 -19.98121 -18.68526 -17.89947 -16.59317 -16.22433 -15.61879 -15.47254 -15.21935 -14.86132 -14.52410 -14.28495 -13.94338 -13.77070 -13.41147 -13.35691 -12.85907 -12.54691 -12.29831 -12.26143 -11.88210 -11.63451 -11.33148 -11.21144 -11.02479 -10.65907 -10.44116 -10.37710 -10.33450 -10.17756 -9.87160 -9.57347 -9.29098 -9.24381 -8.51206 -8.31202 -6.09644 -4.12470 1.09035 2.18789 2.39622 3.07302 3.31319 3.35190 3.38694 3.44235 3.51577 4.15563 4.30101 4.38532 4.60421 4.69299 4.75843 4.94308 5.17047 5.27440 5.28207 5.33621 5.46676 5.47575 5.58069 5.85534 5.87094 5.87565 6.09997 6.23582 6.29245 6.37037 6.62384 6.74767 6.92570 7.08358 7.54335 7.61793 7.72215 7.89075 8.21683 8.33434 8.84764 8.94005 9.52247 11.01969 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.034909 B = 0.002397 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.889396 B =11678.853727 C =12173.224477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.003 4.003 3 C -0.143 4.143 4 C 0.232 3.768 5 N -0.304 5.304 6 N -0.472 5.472 7 H 0.443 0.557 8 C 0.272 3.728 9 C 0.222 3.778 10 N -0.750 5.750 11 C 0.704 3.296 12 O -0.594 6.594 13 N -0.735 5.735 14 C 0.140 3.860 15 C 0.013 3.987 16 C -0.522 4.522 17 H 0.060 0.940 18 C 0.058 3.942 19 N -0.895 5.895 20 Si 0.898 3.102 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.275 1.275 24 N -0.520 5.520 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.099 0.901 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.398 0.602 35 H 0.394 0.606 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.022 0.978 39 H 0.022 0.978 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.648 24.955 -4.880 25.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.024 4.024 3 C -0.201 4.201 4 C -0.050 4.050 5 N -0.134 5.134 6 N -0.190 5.190 7 H 0.289 0.711 8 C -0.007 4.007 9 C 0.095 3.905 10 N -0.409 5.409 11 C 0.403 3.597 12 O -0.473 6.473 13 N -0.388 5.388 14 C 0.017 3.983 15 C -0.025 4.025 16 C -0.560 4.560 17 H 0.078 0.922 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.726 3.274 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.201 1.201 24 N -0.249 5.249 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.117 0.883 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.123 0.877 33 H 0.108 0.892 34 H 0.232 0.768 35 H 0.227 0.773 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.040 0.960 39 H 0.041 0.959 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.006 25.195 -4.745 25.638 hybrid contribution -0.509 -1.036 0.810 1.410 sum -0.516 24.159 -3.935 24.483 Atomic orbital electron populations 1.21833 0.93107 1.02541 1.02712 1.19565 0.96214 0.95220 0.91368 1.21827 1.01353 0.94235 1.02716 1.24310 0.94831 0.92198 0.93700 1.77979 1.19834 1.13268 1.02270 1.48082 1.38898 1.21378 1.10677 0.71076 1.24308 0.95676 0.94414 0.86343 1.19387 0.90781 0.77441 1.02891 1.44963 1.13555 1.06465 1.75912 1.15922 0.85260 0.80026 0.78474 1.90913 1.14825 1.85296 1.56225 1.45535 1.13097 1.07872 1.72289 1.21639 0.97918 0.79681 0.99063 1.19325 0.93383 0.91871 0.97892 1.21006 0.96423 0.92276 1.46333 0.92226 1.25001 0.94835 0.99340 0.95150 1.69943 1.05626 1.29472 1.48291 0.86557 0.78765 0.82898 0.79221 1.20114 1.21280 1.20083 1.70436 1.19334 1.14900 1.20192 0.91367 0.91915 0.92305 0.88256 0.92434 0.91372 0.91921 0.87701 0.89182 0.76839 0.77258 0.92570 0.92645 0.95991 0.95919 0.92790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.18 37.16 0.34 -0.66 16 2 C 0.00 -0.02 3.39 -91.77 -0.31 -0.33 16 3 C -0.14 -0.95 9.17 37.15 0.34 -0.61 16 4 C 0.23 2.51 6.65 -156.85 -1.04 1.47 16 5 N -0.30 -3.27 12.80 32.42 0.41 -2.86 16 6 N -0.47 -4.17 7.45 32.62 0.24 -3.93 16 7 H 0.44 2.58 8.96 -182.34 -1.63 0.94 16 8 C 0.27 2.74 7.60 -155.70 -1.18 1.56 16 9 C 0.22 2.25 6.30 -5.19 -0.03 2.22 16 10 N -0.75 -8.92 5.55 -66.42 -0.37 -9.28 16 11 C 0.70 11.59 8.57 -86.93 -0.74 10.85 16 12 O -0.59 -11.98 16.34 5.29 0.09 -11.89 16 13 N -0.73 -12.53 5.56 -65.23 -0.36 -12.90 16 14 C 0.14 2.93 5.61 -4.04 -0.02 2.90 16 15 C 0.01 0.31 5.09 -27.89 -0.14 0.17 16 16 C -0.52 -14.36 9.11 -34.44 -0.31 -14.67 16 17 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -26.02 13.29 55.43 0.74 -25.29 16 20 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 24 N -0.52 -6.18 11.19 -8.16 -0.09 -6.27 16 25 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.40 4.08 8.48 -40.82 -0.35 3.74 16 35 H 0.39 5.83 8.49 -40.82 -0.35 5.48 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 346.98 15.07 5.23 5.23 Total: -1.00 -33.68 346.98 -9.71 -43.38 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -7.36 Total: 3.10 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: -3.21 Total: 4.43 kcal Atomic # 7 Polarization: -61.10 SS G_CDS: 0.57 Total: -60.53 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: 0.09 Total: -11.89 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.68 -9.71 -43.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001312486988.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.680 kcal (2) G-P(sol) polarization free energy of solvation -33.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds