Wall clock time and date at job start Tue Mar 31 2020 05:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47273 * 2 1 4 4 N 1.46493 * 109.47263 * 119.99955 * 2 1 3 5 5 C 1.34777 * 120.00286 * 274.99837 * 4 2 1 6 6 O 1.21588 * 119.99928 * 0.02562 * 5 4 2 7 7 N 1.34777 * 120.00175 * 179.97438 * 5 4 2 8 8 C 1.46502 * 119.99978 * 180.02562 * 7 5 4 9 9 C 1.53004 * 109.46903 * 180.02562 * 8 7 5 10 10 C 1.52997 * 109.46686 * 179.97438 * 9 8 7 11 11 C 1.50702 * 109.47101 * 180.02562 * 10 9 8 12 12 H 1.08008 * 119.99905 * 359.97438 * 11 10 9 13 13 C 1.37872 * 120.00394 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00218 * 179.97438 * 13 11 10 15 15 Si 1.86808 * 119.99742 * 359.97438 * 13 11 10 16 16 H 1.48493 * 109.46980 * 90.00199 * 15 13 11 17 17 H 1.48504 * 109.46677 * 210.00092 * 15 13 11 18 18 H 1.48497 * 109.46850 * 329.99928 * 15 13 11 19 19 C 1.50700 * 109.47249 * 240.00210 * 2 1 3 20 20 N 1.33251 * 125.52332 * 285.23776 * 19 2 1 21 21 C 1.30831 * 109.82578 * 180.19922 * 20 19 2 22 22 N 1.34438 * 108.07816 * 359.59820 * 21 20 19 23 23 C 1.46495 * 126.82233 * 180.27730 * 22 21 20 24 24 N 1.30712 * 125.53084 * 104.99464 * 19 2 1 25 25 H 1.09008 * 109.47216 * 300.00170 * 1 2 3 26 26 H 1.09006 * 109.47387 * 59.99729 * 1 2 3 27 27 H 1.08996 * 109.47489 * 180.02562 * 1 2 3 28 28 H 0.97001 * 120.00022 * 95.00150 * 4 2 1 29 29 H 0.96998 * 119.99762 * 359.97438 * 7 5 4 30 30 H 1.08996 * 109.46712 * 299.99711 * 8 7 5 31 31 H 1.08995 * 109.47417 * 59.99942 * 8 7 5 32 32 H 1.09001 * 109.46679 * 299.99266 * 9 8 7 33 33 H 1.08995 * 109.47204 * 59.99723 * 9 8 7 34 34 H 1.09007 * 109.47324 * 299.99417 * 10 9 8 35 35 H 1.08995 * 109.47486 * 59.99944 * 10 9 8 36 36 H 0.97007 * 119.99962 * 179.97438 * 14 13 11 37 37 H 1.08002 * 125.96273 * 179.86887 * 21 20 19 38 38 H 1.09005 * 109.47027 * 89.97865 * 23 22 21 39 39 H 1.08995 * 109.47577 * 209.97494 * 23 22 21 40 40 H 1.09004 * 109.47411 * 329.98022 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1471 -0.0182 2.3571 6 8 1.8575 1.1614 2.4118 7 7 2.5959 -0.6537 3.4577 8 6 2.7353 0.0770 4.7198 9 6 3.2599 -0.8693 5.8016 10 6 3.4061 -0.1060 7.1195 11 6 3.9233 -1.0378 8.1850 12 1 4.1270 -2.0713 7.9461 13 6 4.1366 -0.5712 9.4647 14 7 4.5875 -1.3845 10.3946 15 14 3.7851 1.2165 9.8776 16 1 2.3771 1.3524 10.3294 17 1 4.6978 1.6629 10.9607 18 1 4.0011 2.0549 8.6712 19 6 2.0323 -0.7104 -1.2305 20 7 2.0217 -2.0290 -1.4218 21 6 2.5332 -2.3117 -2.5923 22 7 2.8791 -1.1564 -3.1865 23 6 3.4836 -0.9971 -4.5113 24 7 2.5450 -0.1327 -2.2850 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 2.2490 -1.6317 1.1525 29 1 2.8258 -1.5950 3.4142 30 1 3.4366 0.9008 4.5870 31 1 1.7647 0.4710 5.0207 32 1 2.5589 -1.6933 5.9345 33 1 4.2306 -1.2629 5.5005 34 1 4.1073 0.7179 6.9864 35 1 2.4355 0.2880 7.4208 36 1 4.7379 -1.0560 11.2949 37 1 2.6523 -3.3004 -3.0104 38 1 2.6975 -0.8933 -5.2593 39 1 4.1123 -0.1068 -4.5192 40 1 4.0907 -1.8727 -4.7414 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325941859.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:17 Heat of formation + Delta-G solvation = 50.701222 kcal Electronic energy + Delta-G solvation = -20947.247715 eV Core-core repulsion = 17605.957394 eV Total energy + Delta-G solvation = -3341.290321 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.53995 -39.85734 -36.40604 -35.20748 -33.99713 -33.27458 -31.98086 -31.38155 -30.14363 -27.61548 -26.95927 -24.26781 -22.81016 -22.49529 -20.90168 -20.52645 -20.13449 -18.28369 -17.42353 -16.74070 -16.45930 -16.15076 -15.48786 -15.43319 -14.73883 -14.32493 -14.30249 -13.91106 -13.84470 -13.74817 -13.43981 -12.94166 -12.65220 -12.32168 -12.18099 -11.96577 -11.84476 -11.52626 -11.00883 -10.84830 -10.46220 -10.24918 -10.22852 -10.01209 -9.94269 -9.76942 -9.63032 -9.23833 -9.18347 -8.62974 -8.51705 -6.02671 -4.01074 1.15420 1.81861 2.37884 2.90600 3.34928 3.35498 3.42189 3.47263 3.64322 3.98423 4.28577 4.41187 4.48196 4.55241 4.75292 4.83409 5.04466 5.17900 5.31605 5.46189 5.60901 5.73072 5.76216 5.77318 5.91273 6.06296 6.10582 6.33211 6.43750 6.45094 6.53409 6.76442 6.88598 7.08556 7.28895 7.42056 7.65335 7.79904 8.16800 8.54206 8.75237 9.01402 9.59770 11.10536 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.037759 B = 0.002460 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.376230 B =11379.832940 C =11683.707725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.261 3.739 3 H 0.109 0.891 4 N -0.740 5.740 5 C 0.705 3.295 6 O -0.593 6.593 7 N -0.740 5.740 8 C 0.133 3.867 9 C -0.113 4.113 10 C -0.011 4.011 11 C -0.521 4.521 12 H 0.072 0.928 13 C 0.065 3.935 14 N -0.904 5.904 15 Si 0.880 3.120 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.264 1.264 19 C 0.220 3.780 20 N -0.536 5.536 21 C 0.256 3.744 22 N -0.384 5.384 23 C 0.096 3.904 24 N -0.305 5.305 25 H 0.076 0.924 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.403 0.597 29 H 0.396 0.604 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.019 0.981 35 H 0.015 0.985 36 H 0.263 0.737 37 H 0.221 0.779 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.597 -2.490 -32.126 32.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.153 3.847 3 H 0.127 0.873 4 N -0.397 5.397 5 C 0.405 3.595 6 O -0.472 6.472 7 N -0.394 5.394 8 C 0.010 3.990 9 C -0.151 4.151 10 C -0.049 4.049 11 C -0.559 4.559 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.543 5.543 15 Si 0.707 3.293 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.188 1.188 19 C -0.064 4.064 20 N -0.263 5.263 21 C -0.041 4.041 22 N -0.175 5.175 23 C -0.046 4.046 24 N -0.133 5.133 25 H 0.095 0.905 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.237 0.763 29 H 0.229 0.771 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.037 0.963 35 H 0.033 0.967 36 H 0.073 0.927 37 H 0.238 0.762 38 H 0.099 0.901 39 H 0.111 0.889 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.787 -0.838 -31.812 32.181 hybrid contribution 0.262 -0.371 -0.106 0.466 sum -4.525 -1.209 -31.918 32.259 Atomic orbital electron populations 1.22153 0.93257 1.03029 1.03098 1.18717 0.94091 0.95167 0.76765 0.87274 1.45005 1.72429 1.14059 1.08217 1.15912 0.78414 0.85031 0.80193 1.90915 1.57299 1.14312 1.84626 1.45307 1.70551 1.13981 1.09570 1.21517 1.01230 0.95212 0.81046 1.21706 1.00437 0.98106 0.94861 1.19505 0.96701 0.96407 0.92317 1.21107 1.43692 0.97747 0.93314 0.91020 1.25034 0.94571 0.97628 0.96332 1.69917 1.46114 1.35419 1.02838 0.86771 0.78362 0.85801 0.78349 1.20244 1.21430 1.18839 1.24281 0.97349 0.88887 0.95852 1.70340 1.23942 1.14871 1.17152 1.26085 0.94678 0.93565 0.89769 1.50427 1.46595 1.04776 1.15720 1.21987 0.98892 1.05047 0.78679 1.78077 1.21693 1.11760 1.01772 0.90484 0.91700 0.91640 0.76268 0.77064 0.91977 0.91896 0.92111 0.92158 0.96284 0.96680 0.92745 0.76231 0.90063 0.88850 0.88705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.47 37.16 0.35 -1.31 16 2 C 0.26 3.13 3.12 -69.09 -0.22 2.91 16 3 H 0.11 1.47 7.58 -51.93 -0.39 1.08 16 4 N -0.74 -9.16 5.07 -59.82 -0.30 -9.46 16 5 C 0.70 11.00 8.53 -86.92 -0.74 10.25 16 6 O -0.59 -11.44 16.01 5.29 0.08 -11.36 16 7 N -0.74 -10.86 5.56 -65.22 -0.36 -11.22 16 8 C 0.13 2.30 5.67 -4.04 -0.02 2.28 16 9 C -0.11 -2.16 5.27 -26.73 -0.14 -2.30 16 10 C -0.01 -0.27 4.04 -27.88 -0.11 -0.38 16 11 C -0.52 -14.84 9.66 -34.44 -0.33 -15.17 16 12 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 13 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 14 N -0.90 -28.03 13.96 55.43 0.77 -27.25 16 15 Si 0.88 22.02 27.47 -169.99 -4.67 17.35 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 18 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 19 C 0.22 2.50 6.94 -156.85 -1.09 1.41 16 20 N -0.54 -5.40 10.87 -11.97 -0.13 -5.53 16 21 C 0.26 1.71 12.66 -90.65 -1.15 0.56 16 22 N -0.38 -2.83 4.04 -69.44 -0.28 -3.11 16 23 C 0.10 0.24 11.53 59.84 0.69 0.93 16 24 N -0.30 -3.44 12.70 32.42 0.41 -3.03 16 25 H 0.08 0.91 8.14 -51.92 -0.42 0.49 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.40 4.33 8.35 -40.82 -0.34 3.99 16 29 H 0.40 4.76 8.49 -40.82 -0.35 4.42 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 35 H 0.01 0.35 7.57 -51.93 -0.39 -0.04 16 36 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 37 H 0.22 0.36 8.06 -52.49 -0.42 -0.07 16 38 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 39 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.09 -0.04 8.14 -51.93 -0.42 -0.46 16 LS Contribution 343.74 15.07 5.18 5.18 Total: -1.00 -37.00 343.74 -8.24 -45.24 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -6.08 Total: 2.17 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -2.86 Total: 1.02 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: 0.11 Total: -59.60 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.08 Total: -11.36 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.35 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -37.00 -8.24 -45.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325941859.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.942 kcal (2) G-P(sol) polarization free energy of solvation -37.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds