Wall clock time and date at job start Tue Mar 31 2020 05:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47409 * 2 1 4 4 N 1.46504 * 109.47009 * 240.00164 * 2 1 3 5 5 C 1.34777 * 119.99854 * 84.99752 * 4 2 1 6 6 O 1.21593 * 119.99953 * 0.02562 * 5 4 2 7 7 N 1.34773 * 120.00097 * 180.27545 * 5 4 2 8 8 C 1.46500 * 120.00431 * 179.72742 * 7 5 4 9 9 C 1.52999 * 109.47528 * 180.02562 * 8 7 5 10 10 C 1.52998 * 109.47306 * 180.02562 * 9 8 7 11 11 C 1.50698 * 109.47245 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00090 * 0.02562 * 11 10 9 13 13 C 1.37872 * 120.00007 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00091 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 120.00065 * 0.02562 * 13 11 10 16 16 H 1.48503 * 109.47285 * 89.99752 * 15 13 11 17 17 H 1.48507 * 109.47075 * 209.99695 * 15 13 11 18 18 H 1.48503 * 109.47167 * 329.99632 * 15 13 11 19 19 C 1.50700 * 109.47460 * 120.00542 * 2 1 3 20 20 N 1.33241 * 125.52391 * 74.68456 * 19 2 1 21 21 C 1.30832 * 109.82392 * 179.85859 * 20 19 2 22 22 N 1.34434 * 108.08254 * 0.40682 * 21 20 19 23 23 C 1.46492 * 126.82402 * 179.71864 * 22 21 20 24 24 N 1.30716 * 125.52566 * 255.00115 * 19 2 1 25 25 H 1.08999 * 109.47409 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46569 * 299.99572 * 1 2 3 27 27 H 1.09001 * 109.47135 * 59.99282 * 1 2 3 28 28 H 0.97000 * 120.00410 * 265.00478 * 4 2 1 29 29 H 0.97000 * 120.00112 * 359.73180 * 7 5 4 30 30 H 1.09009 * 109.46712 * 300.00517 * 8 7 5 31 31 H 1.08998 * 109.47207 * 59.99494 * 8 7 5 32 32 H 1.09003 * 109.46366 * 299.99640 * 9 8 7 33 33 H 1.08993 * 109.47533 * 59.99613 * 9 8 7 34 34 H 1.09000 * 109.46924 * 300.00089 * 10 9 8 35 35 H 1.09007 * 109.47220 * 59.99210 * 10 9 8 36 36 H 0.97004 * 120.00400 * 180.02562 * 14 13 11 37 37 H 1.08009 * 125.96045 * 180.12327 * 21 20 19 38 38 H 1.08997 * 109.47390 * 270.03609 * 23 22 21 39 39 H 1.09001 * 109.47499 * 30.04755 * 23 22 21 40 40 H 1.09005 * 109.46921 * 150.04409 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1469 -0.0182 -2.3572 6 8 1.8581 1.1617 -2.4116 7 7 2.5909 -0.6548 -3.4590 8 6 2.7250 0.0746 -4.7224 9 6 3.2435 -0.8731 -5.8059 10 6 3.3843 -0.1111 -7.1252 11 6 3.8956 -1.0444 -8.1923 12 1 4.0993 -2.0778 -7.9535 13 6 4.1022 -0.5793 -9.4736 14 7 4.5479 -1.3939 -10.4049 15 14 3.7491 1.2078 -9.8869 16 1 4.9723 2.0191 -9.6614 17 1 3.3393 1.3151 -11.3103 18 1 2.6548 1.7101 -9.0176 19 6 2.0324 -0.7105 1.2304 20 7 2.0204 -2.0290 1.4221 21 6 2.5313 -2.3117 2.5929 22 7 2.8780 -1.1566 3.1869 23 6 3.4821 -0.9974 4.5119 24 7 2.5452 -0.1328 2.2849 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 2.2489 -1.6318 -1.1528 29 1 2.8215 -1.5960 -3.4156 30 1 1.7530 0.4686 -5.0195 31 1 3.4269 0.8985 -4.5936 32 1 4.2154 -1.2672 -5.5090 33 1 2.5414 -1.6967 -5.9347 34 1 2.4126 0.2835 -7.4223 35 1 4.0867 0.7123 -6.9961 36 1 4.6937 -1.0666 -11.3064 37 1 2.6492 -3.3004 3.0114 38 1 2.6959 -0.8930 5.2595 39 1 4.0887 -1.8732 4.7423 40 1 4.1113 -0.1074 4.5197 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325941860.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:19 Heat of formation + Delta-G solvation = 50.705970 kcal Electronic energy + Delta-G solvation = -20946.882354 eV Core-core repulsion = 17605.592239 eV Total energy + Delta-G solvation = -3341.290115 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.54048 -39.85665 -36.40575 -35.20718 -33.99756 -33.27497 -31.98070 -31.38166 -30.14397 -27.61595 -26.95958 -24.26777 -22.81001 -22.49544 -20.90141 -20.52624 -20.13447 -18.28353 -17.42368 -16.74116 -16.45988 -16.15128 -15.48360 -15.43471 -14.74628 -14.32768 -14.28902 -13.90605 -13.85655 -13.74420 -13.44262 -12.93881 -12.65494 -12.32242 -12.18090 -11.95518 -11.85348 -11.52619 -11.00886 -10.84887 -10.46277 -10.24796 -10.22495 -10.02209 -9.93542 -9.76971 -9.63050 -9.23821 -9.18385 -8.62970 -8.51730 -6.02678 -4.01078 1.15382 1.81844 2.37899 2.90528 3.34873 3.35536 3.42185 3.47250 3.64339 3.98407 4.28543 4.41169 4.48190 4.55244 4.75280 4.83372 5.04474 5.17921 5.31597 5.46202 5.60930 5.73081 5.76179 5.77325 5.91236 6.06336 6.10572 6.33200 6.43720 6.45084 6.53389 6.76436 6.88612 7.08565 7.28900 7.42052 7.65321 7.79916 8.16809 8.54223 8.75242 9.01432 9.59759 11.10543 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.037904 B = 0.002459 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.525355 B =11385.735183 C =11689.170844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.261 3.739 3 H 0.109 0.891 4 N -0.740 5.740 5 C 0.705 3.295 6 O -0.593 6.593 7 N -0.740 5.740 8 C 0.133 3.867 9 C -0.113 4.113 10 C -0.011 4.011 11 C -0.521 4.521 12 H 0.072 0.928 13 C 0.065 3.935 14 N -0.904 5.904 15 Si 0.880 3.120 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.264 1.264 19 C 0.220 3.780 20 N -0.536 5.536 21 C 0.256 3.744 22 N -0.384 5.384 23 C 0.096 3.904 24 N -0.305 5.305 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.403 0.597 29 H 0.396 0.604 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.019 0.981 35 H 0.014 0.986 36 H 0.263 0.737 37 H 0.221 0.779 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.555 -2.482 32.139 32.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.153 3.847 3 H 0.127 0.873 4 N -0.397 5.397 5 C 0.404 3.596 6 O -0.472 6.472 7 N -0.394 5.394 8 C 0.010 3.990 9 C -0.151 4.151 10 C -0.049 4.049 11 C -0.559 4.559 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.543 5.543 15 Si 0.707 3.293 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.188 1.188 19 C -0.064 4.064 20 N -0.263 5.263 21 C -0.041 4.041 22 N -0.175 5.175 23 C -0.046 4.046 24 N -0.133 5.133 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.237 0.763 29 H 0.229 0.771 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.038 0.962 35 H 0.033 0.967 36 H 0.073 0.927 37 H 0.238 0.762 38 H 0.099 0.901 39 H 0.113 0.887 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.751 -0.832 31.823 32.187 hybrid contribution 0.307 -0.359 0.117 0.486 sum -4.445 -1.191 31.941 32.270 Atomic orbital electron populations 1.22152 0.93254 1.03032 1.03097 1.18719 0.94091 0.95168 0.76763 0.87272 1.45008 1.72427 1.14048 1.08228 1.15912 0.78408 0.85038 0.80193 1.90917 1.57280 1.14304 1.84657 1.45306 1.70711 1.13987 1.09401 1.21518 1.01271 0.95224 0.80995 1.21706 1.00460 0.98106 0.94838 1.19505 0.96882 0.96229 0.92308 1.21105 1.43820 0.97768 0.93169 0.91017 1.25033 0.94543 0.97646 0.96341 1.69914 1.46207 1.35422 1.02744 0.86772 0.79352 0.85639 0.77523 1.20271 1.21417 1.18823 1.24280 0.97345 0.88891 0.95855 1.70337 1.23952 1.14872 1.17138 1.26085 0.94673 0.93569 0.89772 1.50426 1.46605 1.04783 1.15703 1.21986 0.98900 1.05047 0.78673 1.78080 1.21718 1.11759 1.01749 0.91637 0.91701 0.90482 0.76268 0.77065 0.91895 0.91979 0.92188 0.92081 0.96249 0.96723 0.92742 0.76230 0.90062 0.88705 0.88852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.47 37.16 0.35 -1.31 16 2 C 0.26 3.13 3.12 -69.08 -0.22 2.91 16 3 H 0.11 1.47 7.58 -51.93 -0.39 1.08 16 4 N -0.74 -9.16 5.07 -59.81 -0.30 -9.46 16 5 C 0.70 11.00 8.53 -86.92 -0.74 10.25 16 6 O -0.59 -11.44 16.01 5.28 0.08 -11.36 16 7 N -0.74 -10.85 5.56 -65.22 -0.36 -11.22 16 8 C 0.13 2.30 5.67 -4.04 -0.02 2.28 16 9 C -0.11 -2.16 5.27 -26.73 -0.14 -2.30 16 10 C -0.01 -0.27 4.04 -27.88 -0.11 -0.38 16 11 C -0.52 -14.84 9.66 -34.44 -0.33 -15.17 16 12 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 13 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 14 N -0.90 -28.02 13.96 55.43 0.77 -27.25 16 15 Si 0.88 22.02 27.47 -169.99 -4.67 17.35 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 18 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 19 C 0.22 2.50 6.93 -156.85 -1.09 1.41 16 20 N -0.54 -5.39 10.87 -11.97 -0.13 -5.52 16 21 C 0.26 1.71 12.66 -90.65 -1.15 0.56 16 22 N -0.38 -2.83 4.04 -69.44 -0.28 -3.11 16 23 C 0.10 0.24 11.53 59.84 0.69 0.93 16 24 N -0.30 -3.44 12.70 32.42 0.41 -3.03 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.40 4.33 8.35 -40.82 -0.34 3.99 16 29 H 0.40 4.76 8.49 -40.82 -0.35 4.41 16 30 H 0.06 1.13 8.14 -51.92 -0.42 0.71 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 35 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 36 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 37 H 0.22 0.35 8.06 -52.48 -0.42 -0.07 16 38 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 39 H 0.09 -0.04 8.14 -51.93 -0.42 -0.46 16 40 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 LS Contribution 343.74 15.07 5.18 5.18 Total: -1.00 -37.00 343.74 -8.24 -45.24 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -6.08 Total: 2.17 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -2.86 Total: 1.01 kcal Atomic # 7 Polarization: -59.70 SS G_CDS: 0.11 Total: -59.59 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.08 Total: -11.36 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.35 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -37.00 -8.24 -45.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325941860.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.946 kcal (2) G-P(sol) polarization free energy of solvation -37.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds