Wall clock time and date at job start Tue Mar 31 2020 05:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46900 * 109.46992 * 2 1 4 4 C 1.46904 * 110.99559 * 166.25869 * 3 2 1 5 5 C 1.52994 * 109.47161 * 285.97436 * 4 3 2 6 6 O 1.42894 * 109.47370 * 68.21771 * 5 4 3 7 7 C 1.42903 * 114.00373 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.47340 * 179.97438 * 7 6 5 9 9 H 1.07999 * 119.99785 * 0.02562 * 8 7 6 10 10 C 1.37875 * 120.00129 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99910 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 120.00141 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47146 * 60.00409 * 12 10 8 14 14 H 1.48497 * 109.46990 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47095 * 300.00013 * 12 10 8 16 16 C 1.46896 * 111.00053 * 290.21201 * 3 2 1 17 17 C 1.50697 * 109.47348 * 168.05935 * 16 3 2 18 18 C 1.38218 * 120.01214 * 104.73869 * 17 16 3 19 19 C 1.38230 * 120.02468 * 179.97438 * 18 17 16 20 20 C 1.38270 * 120.04890 * 0.02562 * 19 18 17 21 21 C 1.38170 * 120.02476 * 0.02562 * 20 19 18 22 22 C 1.38432 * 120.01266 * 284.46891 * 17 16 3 23 23 F 1.35105 * 120.02754 * 359.97438 * 22 17 16 24 24 H 1.09003 * 109.47410 * 65.59862 * 1 2 3 25 25 H 1.09005 * 109.46878 * 185.59255 * 1 2 3 26 26 H 1.08994 * 109.47572 * 305.59359 * 1 2 3 27 27 H 1.09002 * 109.47335 * 239.99686 * 2 1 3 28 28 H 1.09004 * 109.47062 * 120.00112 * 2 1 3 29 29 H 1.08999 * 109.47493 * 45.97809 * 4 3 2 30 30 H 1.09000 * 109.46522 * 165.97538 * 4 3 2 31 31 H 1.09000 * 109.47030 * 188.21893 * 5 4 3 32 32 H 1.09006 * 109.47259 * 308.21513 * 5 4 3 33 33 H 1.09003 * 109.46677 * 300.00006 * 7 6 5 34 34 H 1.09001 * 109.47165 * 59.99461 * 7 6 5 35 35 H 0.97004 * 120.00329 * 179.97438 * 11 10 8 36 36 H 1.09007 * 109.47194 * 288.06131 * 16 3 2 37 37 H 1.09005 * 109.47124 * 48.05530 * 16 3 2 38 38 H 1.07997 * 119.98969 * 0.02562 * 18 17 16 39 39 H 1.07996 * 119.97308 * 180.02562 * 19 18 17 40 40 H 1.08003 * 119.98526 * 179.97438 * 20 19 18 41 41 H 1.08010 * 120.01149 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4511 1.4372 0.3258 5 6 3.6442 1.1696 1.8197 6 8 3.3075 -0.1888 2.1078 7 6 3.4535 -0.5446 3.4841 8 6 3.0730 -1.9906 3.6723 9 1 2.7523 -2.5792 2.8255 10 6 3.1355 -2.5625 4.9253 11 7 3.5266 -1.8459 5.9564 12 14 2.6646 -4.3550 5.1584 13 1 3.5499 -5.2113 4.3289 14 1 2.8163 -4.7246 6.5886 15 1 1.2528 -4.5540 4.7433 16 6 1.7484 2.0393 -1.2869 17 6 1.9903 3.5211 -1.1580 18 6 3.1288 4.0856 -1.7018 19 6 3.3507 5.4449 -1.5841 20 6 2.4346 6.2412 -0.9221 21 6 1.2963 5.6789 -0.3769 22 6 1.0697 4.3183 -0.4999 23 9 -0.0464 3.7686 0.0268 24 1 -0.3634 0.4246 -0.9359 25 1 -0.3633 -1.0228 0.1002 26 1 -0.3634 0.5981 0.8356 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.9828 0.6802 -0.2506 30 1 3.8439 2.4237 0.0796 31 1 4.6845 1.3512 2.0898 32 1 2.9985 1.8338 2.3943 33 1 4.4897 -0.3985 3.7891 34 1 2.8035 0.0839 4.0928 35 1 3.5702 -2.2481 6.8381 36 1 2.4094 1.6282 -2.0500 37 1 0.7110 1.8639 -1.5722 38 1 3.8448 3.4646 -2.2194 39 1 4.2404 5.8851 -2.0097 40 1 2.6092 7.3031 -0.8304 41 1 0.5810 6.3012 0.1406 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327800584.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:49 Heat of formation + Delta-G solvation = -67.930214 kcal Electronic energy + Delta-G solvation = -22173.377647 eV Core-core repulsion = 18774.730368 eV Total energy + Delta-G solvation = -3398.647279 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.74993 -39.42354 -37.78746 -36.05783 -32.74094 -32.19031 -30.82719 -30.61819 -28.35916 -26.80106 -25.20488 -22.91294 -22.46293 -21.81974 -21.79506 -20.17734 -17.58344 -16.51236 -16.37874 -16.20531 -15.87794 -15.44961 -15.26551 -14.86563 -14.53893 -14.34194 -13.97815 -13.82159 -13.31191 -13.09825 -13.05927 -12.61356 -12.38590 -12.22315 -11.83322 -11.51998 -11.38088 -11.25589 -11.24281 -10.90886 -10.78893 -10.70193 -10.63534 -10.30562 -9.84350 -9.14133 -9.04519 -8.77574 -8.68123 -8.12336 -8.01376 -6.08331 -4.10153 1.04353 1.08146 3.33323 3.36194 3.39692 3.42521 4.21005 4.25472 4.36465 4.58439 4.63225 4.81701 4.93370 5.03891 5.20524 5.28117 5.34885 5.39700 5.51250 5.59877 5.72440 5.78666 5.85714 5.94456 5.96289 6.05112 6.13535 6.14835 6.20055 6.21478 6.24675 6.41219 6.65144 6.78228 6.88505 7.16708 7.39638 7.43091 7.49808 7.80819 8.18796 8.60727 9.02843 9.54554 11.03135 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.026138 B = 0.003689 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.960605 B = 7588.575673 C = 7886.966947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.035 3.965 3 N -0.525 5.525 4 C 0.058 3.942 5 C 0.068 3.932 6 O -0.393 6.393 7 C 0.195 3.805 8 C -0.514 4.514 9 H 0.065 0.935 10 C 0.057 3.943 11 N -0.898 5.898 12 Si 0.907 3.093 13 H -0.275 1.275 14 H -0.286 1.286 15 H -0.275 1.275 16 C 0.089 3.911 17 C -0.109 4.109 18 C -0.090 4.090 19 C -0.135 4.135 20 C -0.095 4.095 21 C -0.160 4.160 22 C 0.125 3.875 23 F -0.129 7.129 24 H 0.040 0.960 25 H 0.056 0.944 26 H 0.063 0.937 27 H 0.023 0.977 28 H 0.127 0.873 29 H 0.040 0.960 30 H 0.076 0.924 31 H 0.039 0.961 32 H 0.046 0.954 33 H 0.003 0.997 34 H 0.006 0.994 35 H 0.264 0.736 36 H 0.043 0.957 37 H 0.086 0.914 38 H 0.128 0.872 39 H 0.126 0.874 40 H 0.129 0.871 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.196 14.627 -16.388 22.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.091 4.091 3 N -0.250 5.250 4 C -0.070 4.070 5 C -0.009 4.009 6 O -0.313 6.313 7 C 0.121 3.879 8 C -0.553 4.553 9 H 0.083 0.917 10 C -0.144 4.144 11 N -0.537 5.537 12 Si 0.734 3.266 13 H -0.201 1.201 14 H -0.212 1.212 15 H -0.200 1.200 16 C -0.039 4.039 17 C -0.111 4.111 18 C -0.108 4.108 19 C -0.153 4.153 20 C -0.113 4.113 21 C -0.179 4.179 22 C 0.105 3.895 23 F -0.108 7.108 24 H 0.059 0.941 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.041 0.959 28 H 0.144 0.856 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.021 0.979 34 H 0.023 0.977 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.104 0.896 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.147 0.853 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.530 14.685 -15.933 21.815 hybrid contribution 0.167 -1.122 -0.019 1.135 sum -2.363 13.563 -15.951 21.071 Atomic orbital electron populations 1.21749 0.95695 1.01365 1.01194 1.22578 0.95375 0.87600 1.03548 1.62055 1.16276 1.18183 1.28467 1.22184 0.88130 1.00341 0.96315 1.22234 0.97914 0.86617 0.94183 1.87715 1.88186 1.24827 1.30556 1.20179 0.95330 0.95847 0.76513 1.21008 1.44990 0.95084 0.94173 0.91701 1.24936 0.95294 0.98692 0.95500 1.69956 1.47367 1.36602 0.99807 0.86422 0.79175 0.84066 0.76961 1.20082 1.21193 1.20000 1.21021 1.02058 0.89035 0.91769 1.19942 0.94973 0.96206 0.99947 1.20988 0.95906 0.95175 0.98757 1.21144 0.99864 0.93703 1.00562 1.20972 0.93355 1.00071 0.96931 1.21174 0.99935 0.93429 1.03312 1.17517 0.84410 0.91171 0.96400 1.91529 1.49202 1.86064 1.83959 0.94138 0.92480 0.91814 0.95885 0.85583 0.94138 0.90533 0.94299 0.93625 0.97899 0.97660 0.92636 0.93906 0.89576 0.85376 0.85555 0.85323 0.84926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.82 37.16 0.36 -1.79 16 2 C 0.04 0.60 5.49 -3.83 -0.02 0.57 16 3 N -0.53 -8.30 4.40 -236.07 -1.04 -9.34 16 4 C 0.06 0.92 5.38 -3.82 -0.02 0.90 16 5 C 0.07 1.32 6.22 37.15 0.23 1.55 16 6 O -0.39 -9.33 7.34 -35.23 -0.26 -9.58 16 7 C 0.20 5.39 5.69 36.01 0.20 5.59 16 8 C -0.51 -15.10 9.43 -34.44 -0.32 -15.42 16 9 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 10 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 11 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 12 Si 0.91 21.92 29.54 -169.99 -5.02 16.90 16 13 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 14 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 16 C 0.09 1.14 4.64 -4.98 -0.02 1.12 16 17 C -0.11 -1.32 4.58 -104.56 -0.48 -1.80 16 18 C -0.09 -0.89 8.63 -39.59 -0.34 -1.23 16 19 C -0.13 -1.16 10.05 -39.57 -0.40 -1.56 16 20 C -0.09 -0.83 10.04 -39.59 -0.40 -1.23 16 21 C -0.16 -1.68 10.03 -39.52 -0.40 -2.07 16 22 C 0.12 1.60 7.25 -39.42 -0.29 1.32 16 23 F -0.13 -1.90 16.75 2.25 0.04 -1.87 16 24 H 0.04 0.53 6.70 -51.93 -0.35 0.19 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.02 0.36 8.08 -51.93 -0.42 -0.06 16 28 H 0.13 2.61 4.89 -51.93 -0.25 2.35 16 29 H 0.04 0.64 8.02 -51.93 -0.42 0.22 16 30 H 0.08 1.06 6.16 -51.93 -0.32 0.74 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 34 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 35 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.04 0.50 7.91 -51.93 -0.41 0.09 16 37 H 0.09 1.11 6.26 -51.93 -0.33 0.78 16 38 H 0.13 1.06 8.00 -52.49 -0.42 0.64 16 39 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 40 H 0.13 0.79 8.06 -52.48 -0.42 0.36 16 41 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 LS Contribution 340.51 15.07 5.13 5.13 Total: -1.00 -31.34 340.51 -8.66 -40.00 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -6.26 Total: -2.39 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -1.98 Total: -12.50 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: -0.30 Total: -35.69 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: -0.26 Total: -9.58 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.34 -8.66 -40.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327800584.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.934 kcal (2) G-P(sol) polarization free energy of solvation -31.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds