Wall clock time and date at job start Tue Mar 31 2020 05:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46505 * 119.99887 * 2 1 4 4 C 1.50701 * 109.47017 * 270.00095 * 3 2 1 5 5 C 1.35351 * 126.74701 * 94.95149 * 4 3 2 6 6 N 1.35322 * 106.16806 * 180.02562 * 5 4 3 7 7 C 1.46502 * 125.86299 * 180.26356 * 6 5 4 8 8 N 1.28714 * 108.26464 * 0.02562 * 6 5 4 9 9 N 1.28629 * 110.17964 * 359.97438 * 8 6 5 10 10 C 1.34776 * 120.00190 * 180.02562 * 2 1 3 11 11 O 1.21587 * 120.00139 * 180.02562 * 10 2 1 12 12 N 1.34772 * 119.99940 * 359.97438 * 10 2 1 13 13 C 1.46496 * 120.00200 * 179.97438 * 12 10 2 14 14 C 1.53001 * 109.47504 * 180.02562 * 13 12 10 15 15 C 1.52990 * 109.47394 * 180.02562 * 14 13 12 16 16 C 1.50706 * 109.47318 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99782 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00156 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99892 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00037 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46753 * 89.99789 * 20 18 16 22 22 H 1.48504 * 109.47067 * 209.99533 * 20 18 16 23 23 H 1.48496 * 109.46801 * 329.99818 * 20 18 16 24 24 H 1.08993 * 109.47262 * 90.00100 * 1 2 3 25 25 H 1.08997 * 109.47056 * 209.99849 * 1 2 3 26 26 H 1.09003 * 109.47249 * 329.99562 * 1 2 3 27 27 H 1.08999 * 109.47136 * 149.99842 * 3 2 1 28 28 H 1.09001 * 109.46941 * 29.99922 * 3 2 1 29 29 H 1.07991 * 126.91591 * 0.05646 * 5 4 3 30 30 H 1.08997 * 109.47250 * 269.71379 * 7 6 5 31 31 H 1.09003 * 109.47080 * 29.71873 * 7 6 5 32 32 H 1.09006 * 109.46804 * 149.71734 * 7 6 5 33 33 H 0.97003 * 120.00030 * 0.02562 * 12 10 2 34 34 H 1.08994 * 109.47514 * 300.00359 * 13 12 10 35 35 H 1.08996 * 109.46892 * 60.00474 * 13 12 10 36 36 H 1.09003 * 109.46736 * 300.00181 * 14 13 12 37 37 H 1.09001 * 109.46937 * 59.99652 * 14 13 12 38 38 H 1.08994 * 109.47479 * 299.99877 * 15 14 13 39 39 H 1.09008 * 109.47410 * 60.00269 * 15 14 13 40 40 H 0.97003 * 119.99813 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 6 1.6920 2.5542 -2.1531 6 7 2.2938 2.6490 -3.3614 7 6 1.8343 3.4660 -4.4874 8 7 3.3420 1.9021 -3.3497 9 7 3.4627 1.3247 -2.2066 10 6 2.1389 -1.1672 -0.0005 11 8 3.3548 -1.1672 -0.0001 12 7 1.4651 -2.3343 -0.0005 13 6 2.1976 -3.6030 -0.0017 14 6 1.2034 -4.7660 -0.0021 15 6 1.9683 -6.0910 -0.0026 16 6 0.9891 -7.2365 -0.0036 17 1 -0.0728 -7.0391 -0.0043 18 6 1.4487 -8.5364 -0.0037 19 7 2.7417 -8.7766 -0.0034 20 14 0.2348 -9.9562 -0.0043 21 1 -0.0865 -10.3322 -1.4045 22 1 0.8346 -11.1206 0.6957 23 1 -1.0086 -9.5447 0.6956 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5139 27 1 3.1499 1.1385 0.5138 28 1 1.6084 2.0284 0.5138 29 1 0.7898 3.0564 -1.8366 30 1 1.1613 2.8784 -5.1117 31 1 1.3074 4.3421 -4.1094 32 1 2.6926 3.7852 -5.0787 33 1 0.4951 -2.3344 -0.0005 34 1 2.8236 -3.6604 -0.8920 35 1 2.8248 -3.6612 0.8878 36 1 0.5771 -4.7088 0.8882 37 1 0.5764 -4.7077 -0.8917 38 1 2.5949 -6.1484 -0.8926 39 1 2.5951 -6.1491 0.8874 40 1 3.0650 -9.6912 -0.0039 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327879086.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:44 Heat of formation + Delta-G solvation = 71.015636 kcal Electronic energy + Delta-G solvation = -21326.272895 eV Core-core repulsion = 17985.863473 eV Total energy + Delta-G solvation = -3340.409422 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.41110 -39.89630 -36.13872 -35.12538 -34.74941 -33.28012 -31.95588 -30.85467 -28.56290 -27.61635 -26.93490 -25.50575 -22.96308 -22.26858 -21.56340 -20.54351 -19.56926 -17.84349 -17.53487 -16.89993 -16.43704 -15.96610 -15.84583 -15.06998 -14.60667 -14.49323 -14.13118 -13.88605 -13.72849 -13.54232 -13.23546 -13.05940 -12.71841 -12.35059 -12.15505 -11.73245 -11.71346 -11.59663 -10.87476 -10.84926 -10.64338 -10.54997 -10.29164 -9.94717 -9.79487 -9.50554 -9.33098 -9.07083 -8.88473 -8.47337 -8.32759 -5.97275 -4.00298 1.34451 2.10190 2.23394 3.01207 3.33488 3.39605 3.42403 3.47236 4.03326 4.13919 4.26267 4.48021 4.52648 4.59361 4.76326 4.81615 4.88728 5.09586 5.21559 5.38258 5.43925 5.52020 5.65177 5.80633 5.90619 5.91976 6.27369 6.30897 6.39857 6.64062 6.70633 6.86399 7.08087 7.10632 7.69450 7.83177 8.02170 8.17192 8.39174 8.42980 8.87218 9.06498 9.63471 11.14061 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.029467 B = 0.002684 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.989377 B =10428.416352 C =10589.426860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.635 5.635 3 C 0.220 3.780 4 C -0.036 4.036 5 C -0.045 4.045 6 N -0.299 5.299 7 C 0.082 3.918 8 N -0.090 5.090 9 N -0.236 5.236 10 C 0.701 3.299 11 O -0.573 6.573 12 N -0.742 5.742 13 C 0.134 3.866 14 C -0.119 4.119 15 C 0.024 3.976 16 C -0.521 4.521 17 H 0.055 0.945 18 C 0.056 3.944 19 N -0.893 5.893 20 Si 0.893 3.107 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 H 0.049 0.951 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.103 0.897 28 H 0.094 0.906 29 H 0.189 0.811 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.392 0.608 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.019 0.981 39 H 0.020 0.980 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.731 28.915 -3.952 30.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.373 5.373 3 C 0.094 3.906 4 C -0.176 4.176 5 C -0.197 4.197 6 N -0.092 5.092 7 C -0.059 4.059 8 N -0.070 5.070 9 N -0.103 5.103 10 C 0.402 3.598 11 O -0.449 6.449 12 N -0.398 5.398 13 C 0.011 3.989 14 C -0.157 4.157 15 C -0.014 4.014 16 C -0.560 4.560 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.532 5.532 20 Si 0.721 3.279 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 H 0.068 0.932 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.121 0.879 28 H 0.112 0.888 29 H 0.206 0.794 30 H 0.108 0.892 31 H 0.116 0.884 32 H 0.119 0.881 33 H 0.227 0.773 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.473 28.237 -4.786 29.362 hybrid contribution -2.278 -0.330 0.246 2.314 sum -8.750 27.907 -4.540 29.597 Atomic orbital electron populations 1.21707 0.80046 1.03068 1.01451 1.47024 1.06033 1.04760 1.79532 1.19386 0.98946 0.84068 0.88216 1.22588 0.94716 1.00238 1.00079 1.23373 1.03119 1.06498 0.86702 1.47318 1.18322 1.31554 1.12026 1.22240 1.02299 0.94509 0.86891 1.78423 1.04751 1.06136 1.17682 1.75261 1.20677 1.17537 0.96783 1.15955 0.85512 0.80324 0.78055 1.90959 1.11280 1.85882 1.56740 1.45521 1.09695 1.05180 1.79409 1.21499 0.95109 0.80348 1.01925 1.21877 0.97858 0.95341 1.00654 1.19028 0.95475 0.89161 0.97733 1.21207 0.92964 0.90962 1.50844 0.92699 1.25035 0.95113 0.99007 0.95358 1.69973 1.12504 1.20176 1.50590 0.86586 0.81250 0.82041 0.78053 1.20699 1.21213 1.19929 0.93191 0.91128 0.90859 0.87865 0.88773 0.79431 0.89164 0.88411 0.88082 0.77349 0.92003 0.91921 0.92846 0.92929 0.96234 0.96194 0.92941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.60 10.25 59.85 0.61 1.22 16 2 N -0.63 -7.60 2.86 -188.74 -0.54 -8.14 16 3 C 0.22 2.31 6.01 -5.19 -0.03 2.28 16 4 C -0.04 -0.43 6.83 -82.78 -0.57 -1.00 16 5 C -0.04 -0.37 11.55 -17.04 -0.20 -0.56 16 6 N -0.30 -2.75 3.74 -68.05 -0.25 -3.00 16 7 C 0.08 0.29 11.39 59.85 0.68 0.97 16 8 N -0.09 -1.27 13.16 60.35 0.79 -0.48 16 9 N -0.24 -3.83 12.41 33.29 0.41 -3.42 16 10 C 0.70 11.81 8.28 -86.92 -0.72 11.09 16 11 O -0.57 -12.23 15.92 5.29 0.08 -12.15 16 12 N -0.74 -11.85 5.42 -65.23 -0.35 -12.21 16 13 C 0.13 2.57 5.67 -4.04 -0.02 2.55 16 14 C -0.12 -2.44 5.27 -26.74 -0.14 -2.58 16 15 C 0.02 0.62 4.97 -27.89 -0.14 0.48 16 16 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 17 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -27.34 13.29 55.43 0.74 -26.60 16 20 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.07 0.51 6.36 -51.93 -0.33 0.18 16 26 H 0.07 0.32 7.89 -51.93 -0.41 -0.09 16 27 H 0.10 1.32 7.42 -51.93 -0.39 0.93 16 28 H 0.09 0.55 7.89 -51.93 -0.41 0.14 16 29 H 0.19 0.62 8.06 -52.49 -0.42 0.20 16 30 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.10 0.04 8.14 -51.93 -0.42 -0.38 16 32 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.39 5.06 6.20 -40.82 -0.25 4.80 16 34 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.02 0.55 8.14 -51.92 -0.42 0.13 16 40 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 343.74 15.07 5.18 5.18 Total: -1.00 -39.50 343.74 -5.87 -45.37 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -5.98 Total: -2.14 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -0.93 Total: 0.82 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: 0.80 Total: -53.85 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.08 Total: -12.15 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -39.50 -5.87 -45.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327879086.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.383 kcal (2) G-P(sol) polarization free energy of solvation -39.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds