Wall clock time and date at job start Tue Mar 31 2020 05:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 114.00010 * 2 1 4 4 C 1.53002 * 109.47012 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47036 * 184.81390 * 4 3 2 6 6 N 1.40585 * 127.39001 * 275.36789 * 5 4 3 7 7 N 1.28902 * 106.83830 * 180.02562 * 6 5 4 8 8 N 1.28417 * 110.35479 * 359.97438 * 7 6 5 9 9 C 1.31567 * 110.49796 * 0.02562 * 8 7 6 10 10 N 1.38223 * 126.45837 * 180.02562 * 9 8 7 11 11 C 1.36925 * 119.99823 * 96.89256 * 10 9 8 12 12 H 1.08008 * 119.99747 * 145.82290 * 11 10 9 13 13 C 1.38803 * 120.00221 * 325.82167 * 11 10 9 14 14 N 1.31565 * 119.99937 * 151.56181 * 13 11 10 15 15 Si 1.86795 * 119.99795 * 331.56360 * 13 11 10 16 16 H 1.48503 * 109.47153 * 89.69108 * 15 13 11 17 17 H 1.48505 * 109.47002 * 209.68854 * 15 13 11 18 18 H 1.48501 * 109.47339 * 329.69071 * 15 13 11 19 19 C 1.46504 * 120.00108 * 276.89521 * 10 9 8 20 20 C 1.54270 * 110.02979 * 237.16880 * 19 10 9 21 21 C 1.54892 * 104.19222 * 217.10129 * 20 19 10 22 22 C 1.54891 * 102.74658 * 37.94349 * 21 20 19 23 23 C 1.53862 * 110.03386 * 119.99968 * 19 10 9 24 24 H 1.09007 * 109.47496 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47217 * 300.00021 * 1 2 3 26 26 H 1.08996 * 109.47054 * 60.00570 * 1 2 3 27 27 H 1.08997 * 109.47394 * 59.99922 * 3 2 1 28 28 H 1.09000 * 109.46832 * 299.99223 * 3 2 1 29 29 H 1.09008 * 109.47081 * 64.81568 * 4 3 2 30 30 H 1.08999 * 109.47033 * 304.82065 * 4 3 2 31 31 H 0.96999 * 119.99610 * 179.97438 * 14 13 11 32 32 H 1.08999 * 110.01395 * 358.60324 * 19 10 9 33 33 H 1.09000 * 110.48536 * 335.78021 * 20 19 10 34 34 H 1.08996 * 110.48623 * 98.42812 * 20 19 10 35 35 H 1.08994 * 110.75553 * 279.62518 * 21 20 19 36 36 H 1.09003 * 110.75131 * 156.25425 * 21 20 19 37 37 H 1.08997 * 110.48426 * 203.37743 * 22 21 20 38 38 H 1.08999 * 110.59886 * 80.78911 * 22 21 20 39 39 H 1.09005 * 110.03220 * 238.56807 * 23 19 10 40 40 H 1.09004 * 110.03787 * 359.97438 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 4.1309 2.5181 0.1166 6 7 4.3902 3.4304 -0.9212 7 7 4.9168 4.4740 -0.3780 8 7 5.0156 4.3146 0.8924 9 6 4.5497 3.1362 1.2465 10 7 4.4969 2.6257 2.5299 11 6 3.3404 2.7193 3.2569 12 1 3.0700 1.9321 3.9452 13 6 2.5155 3.8259 3.1093 14 7 1.2214 3.7143 3.3187 15 14 3.2429 5.4734 2.6134 16 1 3.2519 5.5849 1.1326 17 1 2.4219 6.5698 3.1874 18 1 4.6329 5.5753 3.1260 19 6 5.6784 1.9844 3.1124 20 6 5.3389 0.5422 3.5422 21 6 6.1386 0.3383 4.8529 22 6 6.0182 1.7188 5.5449 23 6 6.1103 2.7324 4.3857 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 1.6886 1.8464 0.8899 28 1 1.6886 1.8463 -0.8901 29 1 3.8635 0.7197 -0.9292 30 1 3.8509 0.5711 0.8445 31 1 0.6451 4.4877 3.2159 32 1 6.4936 1.9770 2.3889 33 1 4.2696 0.4412 3.7280 34 1 5.6639 -0.1687 2.7826 35 1 7.1810 0.1040 4.6369 36 1 5.6850 -0.4414 5.4648 37 1 6.8389 1.8665 6.2469 38 1 5.0596 1.8094 6.0557 39 1 7.1355 3.0874 4.2806 40 1 5.4412 3.5729 4.5702 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332491320.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:51 Heat of formation + Delta-G solvation = 97.147963 kcal Electronic energy + Delta-G solvation = -23811.085006 eV Core-core repulsion = 20471.808767 eV Total energy + Delta-G solvation = -3339.276239 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.09903 -38.29456 -37.72164 -35.16167 -34.20982 -32.11904 -30.46373 -29.54792 -28.16891 -27.24248 -26.24462 -24.50536 -23.60596 -21.77518 -21.24096 -20.26385 -19.31691 -18.05827 -16.78282 -16.19255 -15.77628 -15.75667 -15.48983 -14.88881 -14.77057 -14.40353 -13.92640 -13.75667 -13.22025 -12.80518 -12.54047 -12.21321 -12.18264 -11.87868 -11.52021 -11.22225 -11.18720 -11.10487 -10.96247 -10.73417 -10.64692 -10.53713 -10.30658 -10.03702 -9.97941 -9.84139 -9.55469 -9.44826 -9.09903 -8.67373 -7.72096 -6.47906 -3.95930 1.78257 2.39443 3.02444 3.44766 3.54306 3.73056 3.95774 4.29648 4.38249 4.86332 4.91994 5.09666 5.15945 5.22707 5.37735 5.47487 5.53334 5.63080 5.68221 5.76250 5.83532 5.85006 5.97194 6.03961 6.07051 6.10523 6.14499 6.22672 6.31665 6.34195 6.35637 6.48234 6.67718 6.79552 6.85157 7.02351 7.28952 7.60180 7.87482 8.51927 9.17687 9.31653 9.43261 10.60141 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.012540 B = 0.008894 C = 0.007637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.333705 B = 3147.574876 C = 3665.277260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.390 6.390 3 C 0.047 3.953 4 C 0.142 3.858 5 N -0.389 5.389 6 N -0.116 5.116 7 N -0.049 5.049 8 N -0.356 5.356 9 C 0.499 3.501 10 N -0.497 5.497 11 C -0.297 4.297 12 H 0.105 0.895 13 C 0.054 3.946 14 N -0.859 5.859 15 Si 0.879 3.121 16 H -0.276 1.276 17 H -0.306 1.306 18 H -0.254 1.254 19 C 0.171 3.829 20 C -0.134 4.134 21 C -0.121 4.121 22 C -0.118 4.118 23 C -0.131 4.131 24 H 0.084 0.916 25 H 0.049 0.951 26 H 0.037 0.963 27 H 0.083 0.917 28 H 0.049 0.951 29 H 0.096 0.904 30 H 0.110 0.890 31 H 0.272 0.728 32 H 0.060 0.940 33 H 0.087 0.913 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.054 0.946 38 H 0.068 0.932 39 H 0.053 0.947 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.467 -8.543 -0.811 9.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.308 6.308 3 C -0.031 4.031 4 C 0.018 3.982 5 N -0.193 5.193 6 N -0.104 5.104 7 N -0.045 5.045 8 N -0.215 5.215 9 C 0.139 3.861 10 N -0.218 5.218 11 C -0.424 4.424 12 H 0.123 0.877 13 C -0.153 4.153 14 N -0.495 5.495 15 Si 0.708 3.292 16 H -0.202 1.202 17 H -0.235 1.235 18 H -0.179 1.179 19 C 0.066 3.934 20 C -0.173 4.173 21 C -0.159 4.159 22 C -0.155 4.155 23 C -0.170 4.170 24 H 0.102 0.898 25 H 0.068 0.932 26 H 0.055 0.945 27 H 0.101 0.899 28 H 0.067 0.933 29 H 0.114 0.886 30 H 0.128 0.872 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.105 0.895 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.072 0.928 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.699 -7.679 -1.678 8.687 hybrid contribution -0.509 0.519 0.172 0.746 sum 3.191 -7.161 -1.505 7.983 Atomic orbital electron populations 1.22713 0.80516 1.02322 1.00492 1.87702 1.20168 1.27239 1.95660 1.22794 0.92459 0.85298 1.02579 1.21334 0.92482 0.79402 1.05009 1.52516 1.45175 1.15090 1.06549 1.82269 1.20316 0.97362 1.10437 1.77807 1.09738 1.15585 1.01396 1.74808 1.26662 1.14267 1.05722 1.22031 0.90418 0.88524 0.85153 1.41212 1.12069 1.65182 1.03324 1.18674 0.96006 1.05002 1.22711 0.87718 1.25491 0.94972 0.98514 0.96347 1.69917 1.02668 1.31055 1.45825 0.86811 0.79942 0.83242 0.79200 1.20247 1.23506 1.17852 1.21443 0.86309 0.91567 0.94080 1.22790 1.02148 0.95954 0.96410 1.22414 0.99355 0.97361 0.96732 1.22268 1.01332 0.94574 0.97362 1.22480 1.00519 0.99580 0.94387 0.89769 0.93200 0.94455 0.89883 0.93306 0.88598 0.87166 0.91860 0.92207 0.89466 0.92692 0.92297 0.92073 0.92755 0.91281 0.92822 0.89625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 11.01 101.05 1.11 1.60 16 2 O -0.39 -6.38 10.70 -35.23 -0.38 -6.75 16 3 C 0.05 0.83 6.26 37.16 0.23 1.06 16 4 C 0.14 2.43 6.89 -4.04 -0.03 2.40 16 5 N -0.39 -8.10 3.69 -61.84 -0.23 -8.33 16 6 N -0.12 -2.57 13.93 60.35 0.84 -1.72 16 7 N -0.05 -1.17 13.00 60.35 0.78 -0.39 16 8 N -0.36 -8.74 7.99 30.10 0.24 -8.50 16 9 C 0.50 11.33 5.58 -320.35 -1.79 9.54 16 10 N -0.50 -10.70 2.19 -108.30 -0.24 -10.93 16 11 C -0.30 -7.13 8.39 -15.07 -0.13 -7.25 16 12 H 0.11 2.61 6.78 -52.48 -0.36 2.25 16 13 C 0.05 1.43 5.24 -17.46 -0.09 1.34 16 14 N -0.86 -23.39 13.96 55.49 0.77 -22.62 16 15 Si 0.88 22.91 24.44 -169.99 -4.16 18.76 16 16 H -0.28 -7.62 5.91 56.52 0.33 -7.29 16 17 H -0.31 -8.10 7.11 56.52 0.40 -7.69 16 18 H -0.25 -6.70 7.11 56.52 0.40 -6.29 16 19 C 0.17 3.07 3.38 -66.81 -0.23 2.84 16 20 C -0.13 -2.06 6.40 -25.07 -0.16 -2.22 16 21 C -0.12 -1.59 6.91 -24.74 -0.17 -1.76 16 22 C -0.12 -1.70 6.83 -25.07 -0.17 -1.87 16 23 C -0.13 -2.24 6.28 -25.62 -0.16 -2.40 16 24 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.10 1.40 8.14 -51.92 -0.42 0.97 16 30 H 0.11 1.83 8.10 -51.93 -0.42 1.41 16 31 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.06 1.05 7.92 -51.93 -0.41 0.63 16 33 H 0.09 1.51 6.30 -51.93 -0.33 1.18 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.09 1.74 7.37 -51.93 -0.38 1.36 16 LS Contribution 325.69 15.07 4.91 4.91 Total: -1.00 -28.84 325.69 -5.20 -34.04 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -6.17 Total: -1.74 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: -1.58 Total: 3.28 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: 2.17 Total: -52.50 kcal Atomic # 8 Polarization: -6.38 SS G_CDS: -0.38 Total: -6.75 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -4.16 Total: 18.76 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.84 -5.20 -34.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332491320.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.190 kcal (2) G-P(sol) polarization free energy of solvation -28.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds