Wall clock time and date at job start Tue Mar 31 2020 05:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 114.00010 * 2 1 4 4 C 1.53002 * 109.47012 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47036 * 184.81390 * 4 3 2 6 6 N 1.40585 * 127.39001 * 275.36789 * 5 4 3 7 7 N 1.28902 * 106.83830 * 180.02562 * 6 5 4 8 8 N 1.28417 * 110.35479 * 359.97438 * 7 6 5 9 9 C 1.31567 * 110.49796 * 0.02562 * 8 7 6 10 10 N 1.38223 * 126.45837 * 180.02562 * 9 8 7 11 11 C 1.36925 * 119.99823 * 96.89256 * 10 9 8 12 12 H 1.08008 * 119.99747 * 145.82290 * 11 10 9 13 13 C 1.38803 * 120.00221 * 325.82167 * 11 10 9 14 14 N 1.31565 * 119.99937 * 151.56181 * 13 11 10 15 15 Si 1.86795 * 119.99795 * 331.56360 * 13 11 10 16 16 H 1.48503 * 109.47153 * 89.69108 * 15 13 11 17 17 H 1.48505 * 109.47002 * 209.68854 * 15 13 11 18 18 H 1.48501 * 109.47339 * 329.69071 * 15 13 11 19 19 C 1.46504 * 120.00108 * 276.89521 * 10 9 8 20 20 C 1.54270 * 110.02979 * 237.16880 * 19 10 9 21 21 C 1.54892 * 104.19222 * 217.10129 * 20 19 10 22 22 C 1.54891 * 102.74658 * 37.94349 * 21 20 19 23 23 C 1.53862 * 110.03386 * 119.99968 * 19 10 9 24 24 H 1.09007 * 109.47496 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47217 * 300.00021 * 1 2 3 26 26 H 1.08996 * 109.47054 * 60.00570 * 1 2 3 27 27 H 1.08997 * 109.47394 * 59.99922 * 3 2 1 28 28 H 1.09000 * 109.46832 * 299.99223 * 3 2 1 29 29 H 1.09008 * 109.47081 * 64.81568 * 4 3 2 30 30 H 1.08999 * 109.47033 * 304.82065 * 4 3 2 31 31 H 0.96999 * 119.99610 * 179.97438 * 14 13 11 32 32 H 1.08999 * 110.01395 * 358.60324 * 19 10 9 33 33 H 1.09000 * 110.48536 * 335.78021 * 20 19 10 34 34 H 1.08996 * 110.48623 * 98.42812 * 20 19 10 35 35 H 1.08994 * 110.75553 * 279.62518 * 21 20 19 36 36 H 1.09003 * 110.75131 * 156.25425 * 21 20 19 37 37 H 1.08997 * 110.48426 * 203.37743 * 22 21 20 38 38 H 1.08999 * 110.59886 * 80.78911 * 22 21 20 39 39 H 1.09005 * 110.03220 * 238.56807 * 23 19 10 40 40 H 1.09004 * 110.03787 * 359.97438 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 4.1309 2.5181 0.1166 6 7 4.3902 3.4304 -0.9212 7 7 4.9168 4.4740 -0.3780 8 7 5.0156 4.3146 0.8924 9 6 4.5497 3.1362 1.2465 10 7 4.4969 2.6257 2.5299 11 6 3.3404 2.7193 3.2569 12 1 3.0700 1.9321 3.9452 13 6 2.5155 3.8259 3.1093 14 7 1.2214 3.7143 3.3187 15 14 3.2429 5.4734 2.6134 16 1 3.2519 5.5849 1.1326 17 1 2.4219 6.5698 3.1874 18 1 4.6329 5.5753 3.1260 19 6 5.6784 1.9844 3.1124 20 6 5.3389 0.5422 3.5422 21 6 6.1386 0.3383 4.8529 22 6 6.0182 1.7188 5.5449 23 6 6.1103 2.7324 4.3857 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 1.6886 1.8464 0.8899 28 1 1.6886 1.8463 -0.8901 29 1 3.8635 0.7197 -0.9292 30 1 3.8509 0.5711 0.8445 31 1 0.6451 4.4877 3.2159 32 1 6.4936 1.9770 2.3889 33 1 4.2696 0.4412 3.7280 34 1 5.6639 -0.1687 2.7826 35 1 7.1810 0.1040 4.6369 36 1 5.6850 -0.4414 5.4648 37 1 6.8389 1.8665 6.2469 38 1 5.0596 1.8094 6.0557 39 1 7.1355 3.0874 4.2806 40 1 5.4412 3.5729 4.5702 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332491320.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:50 Heat of formation + Delta-G solvation = 79.492714 kcal Electronic energy + Delta-G solvation = -23811.850595 eV Core-core repulsion = 20471.808767 eV Total energy + Delta-G solvation = -3340.041828 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.90329 -39.77187 -39.03731 -36.73245 -35.84536 -34.05988 -32.20968 -31.07040 -29.41798 -28.73338 -27.49741 -26.26324 -25.20720 -23.45828 -22.91680 -21.47125 -20.85725 -19.80678 -18.35675 -17.89334 -17.41370 -17.12842 -16.97445 -16.51751 -16.08529 -15.90169 -15.52388 -15.40996 -14.85362 -14.14786 -14.12634 -13.95064 -13.74131 -13.55258 -13.07084 -12.93452 -12.66688 -12.57626 -12.47256 -12.33485 -12.13872 -11.80178 -11.76067 -11.69208 -11.45505 -11.27514 -11.24032 -11.03819 -10.77374 -10.60377 -9.52988 -8.53408 -5.93504 0.01212 0.71307 1.12481 1.35591 1.44599 1.66321 2.26061 2.38817 2.84686 2.88807 3.43336 3.83876 3.84243 3.86738 4.03288 4.10122 4.20226 4.20590 4.36861 4.46409 4.52135 4.53775 4.63590 4.73125 4.79856 4.79945 4.82331 4.82800 4.99068 5.05132 5.15438 5.23000 5.34966 5.48825 5.54621 5.65709 5.68514 5.99021 5.99938 6.63731 7.24932 7.46566 7.56088 8.58825 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.012540 B = 0.008894 C = 0.007637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.333705 B = 3147.574876 C = 3665.277260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.392 6.392 3 C 0.060 3.940 4 C 0.137 3.863 5 N -0.380 5.380 6 N -0.106 5.106 7 N -0.066 5.066 8 N -0.381 5.381 9 C 0.494 3.506 10 N -0.502 5.502 11 C -0.259 4.259 12 H 0.100 0.900 13 C 0.025 3.975 14 N -0.889 5.889 15 Si 0.908 3.092 16 H -0.298 1.298 17 H -0.317 1.317 18 H -0.263 1.263 19 C 0.162 3.838 20 C -0.127 4.127 21 C -0.110 4.110 22 C -0.114 4.114 23 C -0.133 4.133 24 H 0.116 0.884 25 H 0.033 0.967 26 H 0.050 0.950 27 H 0.041 0.959 28 H 0.051 0.949 29 H 0.131 0.869 30 H 0.120 0.880 31 H 0.268 0.732 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.053 0.947 39 H 0.067 0.933 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.742 -11.135 -1.052 12.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.310 6.310 3 C -0.019 4.019 4 C 0.015 3.985 5 N -0.184 5.184 6 N -0.093 5.093 7 N -0.062 5.062 8 N -0.241 5.241 9 C 0.133 3.867 10 N -0.224 5.224 11 C -0.388 4.388 12 H 0.118 0.882 13 C -0.178 4.178 14 N -0.528 5.528 15 Si 0.740 3.260 16 H -0.226 1.226 17 H -0.247 1.247 18 H -0.188 1.188 19 C 0.058 3.942 20 C -0.166 4.166 21 C -0.147 4.147 22 C -0.151 4.151 23 C -0.172 4.172 24 H 0.134 0.866 25 H 0.051 0.949 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.149 0.851 30 H 0.138 0.862 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.993 -10.292 -1.914 11.598 hybrid contribution -0.845 1.232 0.166 1.503 sum 4.148 -9.060 -1.748 10.116 Atomic orbital electron populations 1.22945 0.78946 1.04386 1.00335 1.87692 1.21803 1.25914 1.95589 1.22500 0.92912 0.85809 1.00634 1.21684 0.91944 0.77566 1.07303 1.52579 1.44230 1.15865 1.05740 1.82186 1.19389 0.97043 1.10729 1.77786 1.10784 1.16318 1.01331 1.74693 1.27684 1.15495 1.06182 1.21992 0.90590 0.88155 0.85938 1.41380 1.12715 1.65155 1.03153 1.18565 0.95790 1.03324 1.21078 0.88221 1.25681 0.95279 0.99075 0.97781 1.69944 1.02992 1.30910 1.48958 0.86392 0.78925 0.83414 0.77246 1.22637 1.24716 1.18761 1.21790 0.85142 0.92880 0.94384 1.22722 1.01258 0.94309 0.98336 1.22400 1.00441 0.96698 0.95208 1.22242 1.01511 0.94662 0.96729 1.22473 1.00336 0.99032 0.95323 0.86611 0.94853 0.93149 0.94076 0.93074 0.85076 0.86198 0.92252 0.91394 0.91621 0.90577 0.89993 0.90480 0.90379 0.92842 0.91392 0.93394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 11.01 113.37 1.25 2.00 16 2 O -0.39 -12.04 10.70 -148.98 -1.59 -13.63 16 3 C 0.06 2.07 6.26 71.98 0.45 2.52 16 4 C 0.14 4.38 6.89 86.38 0.59 4.98 16 5 N -0.38 -15.33 3.69 -349.57 -1.29 -16.62 16 6 N -0.11 -4.55 13.93 37.02 0.52 -4.03 16 7 N -0.07 -3.14 13.00 37.02 0.48 -2.66 16 8 N -0.38 -18.76 7.99 -58.67 -0.47 -19.23 16 9 C 0.49 22.18 5.58 260.63 1.46 23.63 16 10 N -0.50 -21.32 2.19 -496.56 -1.09 -22.40 16 11 C -0.26 -12.50 8.39 84.03 0.70 -11.79 16 12 H 0.10 4.97 6.78 -2.91 -0.02 4.95 16 13 C 0.03 1.36 5.24 84.87 0.44 1.80 16 14 N -0.89 -49.62 13.96 21.65 0.30 -49.32 16 15 Si 0.91 48.49 24.44 68.60 1.68 50.17 16 16 H -0.30 -16.90 5.91 99.48 0.59 -16.32 16 17 H -0.32 -17.25 7.11 99.48 0.71 -16.54 16 18 H -0.26 -14.16 7.11 99.48 0.71 -13.45 16 19 C 0.16 5.50 3.38 45.71 0.15 5.66 16 20 C -0.13 -3.54 6.40 31.67 0.20 -3.33 16 21 C -0.11 -2.46 6.91 31.89 0.22 -2.24 16 22 C -0.11 -3.00 6.83 31.67 0.22 -2.79 16 23 C -0.13 -4.38 6.28 31.31 0.20 -4.18 16 24 H 0.12 2.18 8.14 -2.38 -0.02 2.16 16 25 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.13 3.33 8.14 -2.38 -0.02 3.31 16 30 H 0.12 3.66 8.10 -2.39 -0.02 3.64 16 31 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 32 H 0.07 2.21 7.92 -2.39 -0.02 2.19 16 33 H 0.07 2.13 6.30 -2.39 -0.02 2.12 16 34 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 40 H 0.05 1.95 7.37 -2.39 -0.02 1.93 16 Total: -1.00 -63.35 325.69 5.33 -58.02 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: 0.91 Total: 3.44 kcal Atomic # 6 Polarization: 10.37 SS G_CDS: 5.89 Total: 16.26 kcal Atomic # 7 Polarization: -112.71 SS G_CDS: -1.55 Total: -114.26 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: -1.59 Total: -13.63 kcal Atomic # 14 Polarization: 48.49 SS G_CDS: 1.68 Total: 50.17 kcal Total: -63.35 5.33 -58.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332491320.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.516 kcal (2) G-P(sol) polarization free energy of solvation -63.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds