Wall clock time and date at job start Tue Mar 31 2020 05:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46884 * 2 1 4 4 C 1.52998 * 109.46884 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47337 * 179.97438 * 4 3 2 6 6 N 1.40579 * 127.38294 * 270.11753 * 5 4 3 7 7 N 1.28908 * 106.81846 * 180.26316 * 6 5 4 8 8 N 1.28421 * 110.31694 * 359.77362 * 7 6 5 9 9 C 1.31477 * 110.50698 * 359.97438 * 8 7 6 10 10 N 1.38373 * 126.43933 * 179.97438 * 9 8 7 11 11 C 1.47900 * 111.00272 * 239.89655 * 10 9 8 12 12 C 1.53989 * 107.06153 * 145.84199 * 11 10 9 13 13 C 1.54593 * 105.13799 * 358.77953 * 12 11 10 14 14 O 1.42907 * 110.72410 * 96.39797 * 13 12 11 15 15 C 1.50697 * 110.72544 * 219.68085 * 13 12 11 16 16 H 1.08002 * 119.99928 * 24.86552 * 15 13 12 17 17 C 1.37882 * 120.00623 * 204.86619 * 15 13 12 18 18 N 1.31511 * 120.00356 * 173.72229 * 17 15 13 19 19 Si 1.86804 * 119.99362 * 353.71962 * 17 15 13 20 20 H 1.48499 * 109.46906 * 87.22447 * 19 17 15 21 21 H 1.48498 * 109.46836 * 207.22495 * 19 17 15 22 22 H 1.48500 * 109.47213 * 327.22542 * 19 17 15 23 23 C 1.48537 * 111.00297 * 357.29657 * 10 9 8 24 24 H 1.08997 * 109.47651 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47781 * 300.00435 * 1 2 3 26 26 H 1.09007 * 109.47125 * 60.00160 * 1 2 3 27 27 H 1.08997 * 109.47312 * 239.99401 * 2 1 3 28 28 H 1.09000 * 109.46576 * 119.99479 * 2 1 3 29 29 H 1.08997 * 109.47635 * 59.99598 * 3 2 1 30 30 H 1.09000 * 109.47088 * 299.99165 * 3 2 1 31 31 H 1.09001 * 109.47781 * 59.99565 * 4 3 2 32 32 H 1.09007 * 109.47125 * 299.99840 * 4 3 2 33 33 H 1.09010 * 109.91308 * 26.49097 * 11 10 9 34 34 H 1.09001 * 109.92137 * 265.19931 * 11 10 9 35 35 H 1.09006 * 110.30946 * 117.69306 * 12 11 10 36 36 H 1.09000 * 110.31220 * 239.86503 * 12 11 10 37 37 H 0.96703 * 113.99930 * 56.21163 * 14 13 12 38 38 H 0.97004 * 120.00013 * 180.02562 * 18 17 15 39 39 H 1.08999 * 110.66174 * 318.71269 * 23 10 9 40 40 H 1.08992 * 110.66705 * 81.84089 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 7 4.3411 3.6285 -1.1174 7 7 4.7495 4.7645 -0.6651 8 7 4.7485 4.7595 0.6191 9 6 4.3312 3.5990 1.0749 10 7 4.2020 3.2363 2.4040 11 6 5.0510 2.0670 2.7193 12 6 5.5429 2.2434 4.1678 13 6 4.9479 3.5915 4.6350 14 8 3.7369 3.3840 5.3648 15 6 5.9471 4.3569 5.4637 16 1 7.0044 4.1762 5.3377 17 6 5.5116 5.2879 6.3828 18 7 6.3725 5.8659 7.1917 19 14 3.6987 5.7281 6.4790 20 1 3.0076 4.7827 7.3921 21 1 3.5523 7.1124 6.9962 22 1 3.0953 5.6390 5.1250 23 6 4.6648 4.3263 3.3007 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3635 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 1.6766 1.9564 0.8899 30 1 1.6767 1.9563 -0.8901 31 1 3.9337 0.9285 -0.8890 32 1 3.9329 0.9288 0.8909 33 1 5.9025 2.0324 2.0396 34 1 4.4672 1.1505 2.6344 35 1 5.1752 1.4303 4.7939 36 1 6.6319 2.2806 4.1957 37 1 3.8323 2.7951 6.1258 38 1 6.0660 6.5206 7.8386 39 1 5.5751 4.7833 2.9125 40 1 3.8832 5.0746 3.4318 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332492745.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:19 Heat of formation + Delta-G solvation = 74.112094 kcal Electronic energy + Delta-G solvation = -23000.063092 eV Core-core repulsion = 19659.787943 eV Total energy + Delta-G solvation = -3340.275149 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.77456 -39.16027 -36.80487 -35.65308 -33.85556 -32.42157 -31.97141 -29.93214 -29.06495 -28.67286 -25.10625 -24.96184 -22.57649 -22.51897 -21.47545 -20.87785 -19.77127 -17.70379 -17.25558 -16.54005 -16.38203 -15.92595 -15.23539 -14.93928 -14.53522 -14.25705 -14.12265 -13.67164 -13.14039 -12.98893 -12.81822 -12.63813 -12.58680 -12.22264 -11.98593 -11.91829 -11.69241 -11.47337 -11.38175 -11.21192 -10.93332 -10.72400 -10.59048 -10.39382 -10.31628 -10.19407 -10.14997 -9.29084 -8.67819 -8.63308 -8.46744 -6.24135 -4.38251 1.19389 1.85594 2.52194 3.43984 3.52501 3.67236 3.74382 4.17279 4.39527 4.46580 4.59251 4.67340 4.76675 4.83753 4.92202 5.06007 5.11890 5.17152 5.22026 5.29152 5.40811 5.46418 5.48871 5.58518 5.62243 5.80017 5.85067 5.89543 5.94170 5.98560 6.10971 6.31589 6.39661 6.46684 6.67815 6.90018 7.08962 7.40204 8.07427 8.57203 8.75174 8.76335 9.36777 10.84364 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.019275 B = 0.005393 C = 0.004806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.322575 B = 5190.785861 C = 5824.872880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.137 4.137 4 C 0.125 3.875 5 N -0.393 5.393 6 N -0.102 5.102 7 N -0.033 5.033 8 N -0.357 5.357 9 C 0.427 3.573 10 N -0.436 5.436 11 C 0.042 3.958 12 C -0.145 4.145 13 C 0.229 3.771 14 O -0.555 6.555 15 C -0.557 4.557 16 H 0.082 0.918 17 C 0.077 3.923 18 N -0.884 5.884 19 Si 0.947 3.053 20 H -0.292 1.292 21 H -0.324 1.324 22 H -0.267 1.267 23 C 0.062 3.938 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.050 0.950 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.370 0.630 38 H 0.268 0.732 39 H 0.087 0.913 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.713 -13.969 -10.892 19.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.175 4.175 4 C 0.003 3.997 5 N -0.192 5.192 6 N -0.089 5.089 7 N -0.029 5.029 8 N -0.215 5.215 9 C 0.061 3.939 10 N -0.160 5.160 11 C -0.085 4.085 12 C -0.184 4.184 13 C 0.188 3.812 14 O -0.363 6.363 15 C -0.594 4.594 16 H 0.100 0.900 17 C -0.129 4.129 18 N -0.518 5.518 19 Si 0.783 3.217 20 H -0.219 1.219 21 H -0.256 1.256 22 H -0.193 1.193 23 C -0.063 4.063 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.068 0.932 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.218 0.782 38 H 0.077 0.923 39 H 0.105 0.895 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.099 -12.694 -12.127 19.334 hybrid contribution -0.295 -0.720 0.872 1.169 sum -8.394 -13.414 -11.255 19.418 Atomic orbital electron populations 1.21748 0.95217 1.01813 1.02189 1.21422 0.96571 0.95226 1.02435 1.22020 0.92937 0.98533 1.04057 1.22086 0.95823 0.76589 1.05190 1.51438 1.49513 1.14145 1.04149 1.82424 1.21346 0.98448 1.06702 1.77857 1.09486 1.12373 1.03146 1.74965 1.24558 1.19034 1.02973 1.23848 0.92448 0.87822 0.89807 1.61673 1.49079 1.09807 0.95484 1.23029 0.94182 0.91909 0.99348 1.23157 1.02054 1.00595 0.92571 1.19957 0.82461 0.90237 0.88499 1.86169 1.36127 1.68941 1.45070 1.21197 0.93759 1.23285 1.21169 0.90046 1.25151 0.99573 0.94325 0.93854 1.69955 1.35629 1.26693 1.19546 0.85709 0.83128 0.74147 0.78757 1.21919 1.25575 1.19309 1.24010 1.01123 0.91549 0.89664 0.92461 0.92391 0.92695 0.91628 0.91371 0.90352 0.90923 0.88073 0.87927 0.93190 0.89881 0.90715 0.89967 0.78177 0.92267 0.89526 0.88699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.16 0.37 -0.71 16 2 C -0.12 -0.83 5.93 -26.73 -0.16 -0.98 16 3 C -0.14 -1.29 5.54 -26.73 -0.15 -1.43 16 4 C 0.13 1.26 6.40 -4.04 -0.03 1.23 16 5 N -0.39 -5.85 3.69 -61.86 -0.23 -6.08 16 6 N -0.10 -1.73 13.93 60.35 0.84 -0.89 16 7 N -0.03 -0.62 13.38 60.35 0.81 0.18 16 8 N -0.36 -7.13 11.00 30.10 0.33 -6.80 16 9 C 0.43 7.51 7.01 -320.42 -2.25 5.27 16 10 N -0.44 -7.57 5.32 -170.90 -0.91 -8.48 16 11 C 0.04 0.60 5.50 -2.76 -0.02 0.58 16 12 C -0.15 -2.38 6.24 -25.38 -0.16 -2.54 16 13 C 0.23 4.75 0.78 -89.92 -0.07 4.68 16 14 O -0.56 -11.29 8.50 -35.23 -0.30 -11.59 16 15 C -0.56 -14.18 8.82 -34.44 -0.30 -14.48 16 16 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 17 C 0.08 2.08 5.46 -17.82 -0.10 1.99 16 18 N -0.88 -25.67 13.96 55.43 0.77 -24.90 16 19 Si 0.95 23.02 24.88 -169.99 -4.23 18.79 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.32 -8.17 7.11 56.52 0.40 -7.77 16 22 H -0.27 -6.50 5.31 56.52 0.30 -6.20 16 23 C 0.06 1.28 5.01 -1.90 -0.01 1.27 16 24 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.10 0.90 5.45 -51.93 -0.28 0.62 16 33 H 0.05 0.70 7.75 -51.92 -0.40 0.30 16 34 H 0.08 0.94 6.66 -51.93 -0.35 0.59 16 35 H 0.07 1.06 8.00 -51.93 -0.42 0.64 16 36 H 0.08 1.39 7.70 -51.93 -0.40 0.99 16 37 H 0.37 6.40 8.92 45.56 0.41 6.81 16 38 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.09 1.90 7.43 -51.93 -0.39 1.51 16 40 H 0.09 2.16 6.46 -51.93 -0.34 1.82 16 LS Contribution 320.42 15.07 4.83 4.83 Total: -1.00 -31.12 320.42 -6.14 -37.26 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -5.19 Total: 2.78 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -2.86 Total: -5.12 kcal Atomic # 7 Polarization: -48.57 SS G_CDS: 1.62 Total: -46.96 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: -0.30 Total: -11.59 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -4.23 Total: 18.79 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.12 -6.14 -37.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332492745.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.371 kcal (2) G-P(sol) polarization free energy of solvation -31.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds