Wall clock time and date at job start Tue Mar 31 2020 05:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46884 * 2 1 4 4 C 1.52998 * 109.46884 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47337 * 179.97438 * 4 3 2 6 6 N 1.40579 * 127.38294 * 270.11753 * 5 4 3 7 7 N 1.28908 * 106.81846 * 180.26316 * 6 5 4 8 8 N 1.28421 * 110.31694 * 359.77362 * 7 6 5 9 9 C 1.31477 * 110.50698 * 359.97438 * 8 7 6 10 10 N 1.38373 * 126.43933 * 179.97438 * 9 8 7 11 11 C 1.47900 * 111.00272 * 239.89655 * 10 9 8 12 12 C 1.53989 * 107.06153 * 145.84199 * 11 10 9 13 13 C 1.54593 * 105.13799 * 358.77953 * 12 11 10 14 14 O 1.42907 * 110.72410 * 96.39797 * 13 12 11 15 15 C 1.50697 * 110.72544 * 219.68085 * 13 12 11 16 16 H 1.08002 * 119.99928 * 24.86552 * 15 13 12 17 17 C 1.37882 * 120.00623 * 204.86619 * 15 13 12 18 18 N 1.31511 * 120.00356 * 173.72229 * 17 15 13 19 19 Si 1.86804 * 119.99362 * 353.71962 * 17 15 13 20 20 H 1.48499 * 109.46906 * 87.22447 * 19 17 15 21 21 H 1.48498 * 109.46836 * 207.22495 * 19 17 15 22 22 H 1.48500 * 109.47213 * 327.22542 * 19 17 15 23 23 C 1.48537 * 111.00297 * 357.29657 * 10 9 8 24 24 H 1.08997 * 109.47651 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47781 * 300.00435 * 1 2 3 26 26 H 1.09007 * 109.47125 * 60.00160 * 1 2 3 27 27 H 1.08997 * 109.47312 * 239.99401 * 2 1 3 28 28 H 1.09000 * 109.46576 * 119.99479 * 2 1 3 29 29 H 1.08997 * 109.47635 * 59.99598 * 3 2 1 30 30 H 1.09000 * 109.47088 * 299.99165 * 3 2 1 31 31 H 1.09001 * 109.47781 * 59.99565 * 4 3 2 32 32 H 1.09007 * 109.47125 * 299.99840 * 4 3 2 33 33 H 1.09010 * 109.91308 * 26.49097 * 11 10 9 34 34 H 1.09001 * 109.92137 * 265.19931 * 11 10 9 35 35 H 1.09006 * 110.30946 * 117.69306 * 12 11 10 36 36 H 1.09000 * 110.31220 * 239.86503 * 12 11 10 37 37 H 0.96703 * 113.99930 * 56.21163 * 14 13 12 38 38 H 0.97004 * 120.00013 * 180.02562 * 18 17 15 39 39 H 1.08999 * 110.66174 * 318.71269 * 23 10 9 40 40 H 1.08992 * 110.66705 * 81.84089 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 7 4.3411 3.6285 -1.1174 7 7 4.7495 4.7645 -0.6651 8 7 4.7485 4.7595 0.6191 9 6 4.3312 3.5990 1.0749 10 7 4.2020 3.2363 2.4040 11 6 5.0510 2.0670 2.7193 12 6 5.5429 2.2434 4.1678 13 6 4.9479 3.5915 4.6350 14 8 3.7369 3.3840 5.3648 15 6 5.9471 4.3569 5.4637 16 1 7.0044 4.1762 5.3377 17 6 5.5116 5.2879 6.3828 18 7 6.3725 5.8659 7.1917 19 14 3.6987 5.7281 6.4790 20 1 3.0076 4.7827 7.3921 21 1 3.5523 7.1124 6.9962 22 1 3.0953 5.6390 5.1250 23 6 4.6648 4.3263 3.3007 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3635 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 1.6766 1.9564 0.8899 30 1 1.6767 1.9563 -0.8901 31 1 3.9337 0.9285 -0.8890 32 1 3.9329 0.9288 0.8909 33 1 5.9025 2.0324 2.0396 34 1 4.4672 1.1505 2.6344 35 1 5.1752 1.4303 4.7939 36 1 6.6319 2.2806 4.1957 37 1 3.8323 2.7951 6.1258 38 1 6.0660 6.5206 7.8386 39 1 5.5751 4.7833 2.9125 40 1 3.8832 5.0746 3.4318 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332492745.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:18 Heat of formation + Delta-G solvation = 51.047819 kcal Electronic energy + Delta-G solvation = -23001.063234 eV Core-core repulsion = 19659.787943 eV Total energy + Delta-G solvation = -3341.275291 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.12380 -40.63497 -37.81267 -37.06556 -34.82141 -34.44389 -33.39285 -31.13849 -30.29826 -30.08262 -26.85520 -26.04113 -23.99088 -23.60925 -22.20068 -22.12810 -21.39066 -19.53593 -18.55582 -17.85192 -17.70845 -17.05077 -16.67387 -16.37663 -16.08638 -15.53403 -15.01739 -14.72148 -14.60128 -14.35006 -14.30858 -13.98965 -13.78651 -13.57438 -13.32983 -13.21256 -12.81593 -12.62805 -12.50944 -12.36782 -12.18746 -12.09519 -12.00052 -11.84142 -11.59695 -11.46098 -11.34314 -11.22441 -10.66879 -10.33958 -9.91555 -8.34896 -6.48754 -0.11536 0.66902 1.12237 1.48274 1.55280 1.74486 2.41781 2.44284 2.94399 3.04907 3.41899 3.47181 3.67115 3.80447 3.93740 4.02425 4.03864 4.08388 4.17072 4.32379 4.43005 4.44052 4.53053 4.59758 4.80360 4.81824 4.82577 4.88360 4.93616 5.01364 5.09160 5.21241 5.22290 5.28381 5.31223 5.43501 5.55632 5.74204 6.07289 6.60202 7.03954 7.32672 7.38202 8.77814 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.019275 B = 0.005393 C = 0.004806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.322575 B = 5190.785861 C = 5824.872880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.112 4.112 3 C -0.130 4.130 4 C 0.112 3.888 5 N -0.373 5.373 6 N -0.095 5.095 7 N -0.056 5.056 8 N -0.393 5.393 9 C 0.418 3.582 10 N -0.428 5.428 11 C 0.043 3.957 12 C -0.137 4.137 13 C 0.227 3.773 14 O -0.558 6.558 15 C -0.549 4.549 16 H 0.049 0.951 17 C 0.030 3.970 18 N -0.933 5.933 19 Si 1.002 2.998 20 H -0.273 1.273 21 H -0.341 1.341 22 H -0.269 1.269 23 C 0.069 3.931 24 H 0.069 0.931 25 H 0.047 0.953 26 H 0.050 0.950 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.129 0.871 32 H 0.125 0.875 33 H 0.057 0.943 34 H 0.129 0.871 35 H 0.106 0.894 36 H 0.073 0.927 37 H 0.385 0.615 38 H 0.267 0.733 39 H 0.066 0.934 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.169 -17.347 -11.965 22.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.150 4.150 3 C -0.169 4.169 4 C -0.007 4.007 5 N -0.174 5.174 6 N -0.083 5.083 7 N -0.052 5.052 8 N -0.252 5.252 9 C 0.052 3.948 10 N -0.152 5.152 11 C -0.082 4.082 12 C -0.175 4.175 13 C 0.186 3.814 14 O -0.367 6.367 15 C -0.587 4.587 16 H 0.067 0.933 17 C -0.171 4.171 18 N -0.571 5.571 19 Si 0.836 3.164 20 H -0.199 1.199 21 H -0.274 1.274 22 H -0.195 1.195 23 C -0.058 4.058 24 H 0.088 0.912 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.147 0.853 32 H 0.143 0.857 33 H 0.076 0.924 34 H 0.147 0.853 35 H 0.125 0.875 36 H 0.092 0.908 37 H 0.236 0.764 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.569 -16.135 -13.215 22.947 hybrid contribution 0.176 0.234 1.115 1.153 sum -9.394 -15.901 -12.100 22.079 Atomic orbital electron populations 1.21772 0.95547 1.02406 1.01528 1.21412 0.96207 0.93466 1.03897 1.21968 0.92331 1.00039 1.02553 1.22666 0.96245 0.74136 1.07669 1.51701 1.48002 1.15118 1.02554 1.82312 1.20309 0.98210 1.07472 1.77844 1.10953 1.13431 1.02986 1.74861 1.25818 1.20896 1.03596 1.23721 0.92972 0.87861 0.90259 1.61679 1.49444 1.09249 0.94867 1.23230 0.94926 0.92243 0.97851 1.23024 1.01442 0.98655 0.94393 1.19773 0.81882 0.92195 0.87599 1.86104 1.35312 1.69504 1.45819 1.21507 0.93552 1.22842 1.20801 0.93288 1.25831 1.02619 0.94609 0.94023 1.70070 1.37351 1.28395 1.21267 0.84815 0.79566 0.73352 0.78667 1.19907 1.27438 1.19542 1.23567 0.99411 0.92105 0.90724 0.91240 0.93423 0.93084 0.89922 0.90106 0.92368 0.92027 0.85309 0.85719 0.92423 0.85294 0.87509 0.90841 0.76438 0.92426 0.91591 0.91125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 9.91 71.98 0.71 -1.05 16 2 C -0.11 -1.11 5.93 30.59 0.18 -0.93 16 3 C -0.13 -2.04 5.54 30.59 0.17 -1.87 16 4 C 0.11 1.79 6.40 86.38 0.55 2.35 16 5 N -0.37 -10.18 3.69 -349.62 -1.29 -11.46 16 6 N -0.10 -3.09 13.93 37.02 0.52 -2.57 16 7 N -0.06 -2.14 13.38 37.02 0.50 -1.65 16 8 N -0.39 -15.69 11.00 -58.70 -0.65 -16.34 16 9 C 0.42 14.09 7.01 260.65 1.83 15.91 16 10 N -0.43 -13.93 5.32 -694.59 -3.69 -17.62 16 11 C 0.04 1.06 5.50 86.44 0.48 1.53 16 12 C -0.14 -4.06 6.24 31.47 0.20 -3.87 16 13 C 0.23 9.09 0.78 -10.34 -0.01 9.09 16 14 O -0.56 -21.24 8.50 -148.98 -1.27 -22.50 16 15 C -0.55 -28.31 8.82 25.60 0.23 -28.08 16 16 H 0.05 2.80 7.84 -2.91 -0.02 2.77 16 17 C 0.03 1.64 5.46 84.66 0.46 2.10 16 18 N -0.93 -55.85 13.96 21.45 0.30 -55.55 16 19 Si 1.00 47.83 24.88 68.60 1.71 49.54 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 21 H -0.34 -17.15 7.11 99.48 0.71 -16.44 16 22 H -0.27 -12.85 5.31 99.48 0.53 -12.32 16 23 C 0.07 2.82 5.01 86.65 0.43 3.26 16 24 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 27 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.08 0.64 8.14 -2.39 -0.02 0.63 16 29 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.06 1.10 8.14 -2.39 -0.02 1.09 16 31 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.13 1.48 5.45 -2.38 -0.01 1.47 16 33 H 0.06 1.39 7.75 -2.38 -0.02 1.37 16 34 H 0.13 2.09 6.66 -2.39 -0.02 2.07 16 35 H 0.11 2.51 8.00 -2.38 -0.02 2.49 16 36 H 0.07 2.33 7.70 -2.39 -0.02 2.31 16 37 H 0.39 12.03 8.92 -74.06 -0.66 11.37 16 38 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 39 H 0.07 2.96 7.43 -2.39 -0.02 2.94 16 40 H 0.07 3.23 6.46 -2.39 -0.02 3.22 16 Total: -1.00 -70.26 320.42 1.57 -68.70 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: 0.21 Total: 11.02 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: 5.23 Total: -1.56 kcal Atomic # 7 Polarization: -100.88 SS G_CDS: -4.32 Total: -105.19 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -1.27 Total: -22.50 kcal Atomic # 14 Polarization: 47.83 SS G_CDS: 1.71 Total: 49.54 kcal Total: -70.26 1.57 -68.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332492745.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.745 kcal (2) G-P(sol) polarization free energy of solvation -70.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds