Wall clock time and date at job start Tue Mar 31 2020 05:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50705 * 119.99630 * 2 1 4 4 N 1.46905 * 109.47101 * 124.35082 * 3 2 1 5 5 C 1.46901 * 110.99626 * 296.61925 * 4 3 2 6 6 C 1.50698 * 109.47474 * 288.60261 * 5 4 3 7 7 H 1.08004 * 119.99718 * 358.29438 * 6 5 4 8 8 C 1.37873 * 120.00071 * 178.56716 * 6 5 4 9 9 N 1.31517 * 120.00156 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 120.00060 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47267 * 89.99948 * 10 8 6 12 12 H 1.48504 * 109.47423 * 209.99788 * 10 8 6 13 13 H 1.48504 * 109.47126 * 330.00234 * 10 8 6 14 14 C 1.38370 * 110.99948 * 60.57495 * 4 3 2 15 15 N 1.31474 * 126.44126 * 253.61462 * 14 4 3 16 16 N 1.28419 * 110.51138 * 179.97438 * 15 14 4 17 17 N 1.28913 * 110.31728 * 0.02562 * 16 15 14 18 18 N 1.35317 * 126.44050 * 73.30476 * 14 4 3 19 19 C 1.46495 * 127.38054 * 359.97438 * 18 14 4 20 20 H 1.09003 * 109.47247 * 4.81496 * 19 18 14 21 21 C 1.53007 * 109.47117 * 124.81010 * 19 18 14 22 22 C 1.52997 * 109.47434 * 244.81242 * 19 18 14 23 23 O 1.42898 * 109.47506 * 174.99882 * 22 19 18 24 24 C 1.42900 * 114.00189 * 180.02562 * 23 22 19 25 25 H 1.08004 * 119.99296 * 179.97438 * 1 2 3 26 26 H 1.07998 * 119.99992 * 359.97438 * 1 2 3 27 27 H 1.07996 * 120.00736 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47021 * 4.35106 * 3 2 1 29 29 H 1.09002 * 109.47292 * 244.35008 * 3 2 1 30 30 H 1.08998 * 109.46513 * 168.59961 * 5 4 3 31 31 H 1.09007 * 109.47044 * 48.60694 * 5 4 3 32 32 H 0.96996 * 119.99999 * 180.02562 * 9 8 6 33 33 H 1.09003 * 109.46665 * 60.00130 * 21 19 18 34 34 H 1.09000 * 109.46733 * 180.02562 * 21 19 18 35 35 H 1.08995 * 109.47062 * 300.00361 * 21 19 18 36 36 H 1.08996 * 109.46841 * 295.00459 * 22 19 18 37 37 H 1.09001 * 109.46678 * 54.99637 * 22 19 18 38 38 H 1.08997 * 109.46676 * 60.00093 * 24 23 22 39 39 H 1.08999 * 109.46780 * 180.02562 * 24 23 22 40 40 H 1.09001 * 109.46720 * 300.00218 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9851 1.3386 1.1435 5 6 2.2491 1.2971 2.4141 6 6 1.5456 2.6121 2.6304 7 1 1.6584 3.4096 1.9109 8 6 0.7624 2.7990 3.7497 9 7 0.6297 1.8299 4.6288 10 14 -0.1090 4.4293 4.0181 11 1 -1.4538 4.3811 3.3901 12 1 -0.2517 4.6804 5.4748 13 1 0.6857 5.5226 3.4029 14 6 3.9049 0.3075 1.0692 15 7 3.9194 -0.7808 1.8067 16 7 4.9082 -1.5324 1.4804 17 7 5.5872 -0.9904 0.5280 18 7 4.9553 0.2271 0.2199 19 6 5.3506 1.2011 -0.8004 20 1 4.7092 2.0798 -0.7318 21 6 6.8066 1.6137 -0.5747 22 6 5.2079 0.5726 -2.1880 23 8 5.4811 1.5569 -3.1873 24 6 5.3742 1.0706 -4.5267 25 1 -0.5399 -0.9354 -0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8501 -0.9352 -0.0004 28 1 1.3576 2.1321 0.0780 29 1 2.6304 1.3975 -0.9264 30 1 2.9468 1.1193 3.2324 31 1 1.5141 0.4927 2.3822 32 1 0.0785 1.9614 5.4160 33 1 7.4480 0.7350 -0.6433 34 1 7.1005 2.3387 -1.3337 35 1 6.9083 2.0615 0.4138 36 1 5.9136 -0.2520 -2.2876 37 1 4.1919 0.1985 -2.3146 38 1 4.3616 0.7073 -4.7015 39 1 5.5968 1.8774 -5.2250 40 1 6.0832 0.2561 -4.6751 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332956993.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:37 Heat of formation + Delta-G solvation = 87.008935 kcal Electronic energy + Delta-G solvation = -22944.765161 eV Core-core repulsion = 19605.049261 eV Total energy + Delta-G solvation = -3339.715900 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.07025 -39.54972 -39.25396 -36.82429 -34.90911 -34.30797 -32.50766 -32.03153 -29.33628 -28.46064 -27.27923 -26.56138 -25.19629 -24.68787 -22.38102 -22.12820 -20.92923 -18.65925 -18.23924 -17.97900 -17.55887 -17.12275 -16.89944 -16.71086 -16.18429 -15.92371 -15.57494 -15.09466 -14.66531 -14.26160 -14.10388 -13.99756 -13.81810 -13.49139 -13.20508 -12.90728 -12.83944 -12.73461 -12.57659 -12.41980 -12.35878 -12.17346 -12.13610 -11.96463 -11.60035 -11.43177 -11.35897 -10.77443 -10.61760 -10.38498 -9.70126 -8.18170 -6.30828 -0.07981 0.59789 1.13027 1.37620 1.47229 1.48837 1.59577 2.36344 2.54096 2.80151 3.16064 3.21873 3.54788 3.65046 3.83813 3.91063 3.99437 4.06419 4.15849 4.31954 4.37387 4.45509 4.54324 4.56053 4.60469 4.74325 4.81543 4.86844 4.90053 4.97161 5.10825 5.13085 5.26860 5.51007 5.61125 5.69038 5.84190 5.91912 6.00721 6.25829 6.81312 7.37864 7.46542 8.93021 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.017648 B = 0.005190 C = 0.004900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.173100 B = 5393.578350 C = 5712.456894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.209 4.209 3 C 0.095 3.905 4 N -0.448 5.448 5 C 0.228 3.772 6 C -0.526 4.526 7 H 0.077 0.923 8 C 0.010 3.990 9 N -0.929 5.929 10 Si 0.971 3.029 11 H -0.269 1.269 12 H -0.290 1.290 13 H -0.261 1.261 14 C 0.437 3.563 15 N -0.387 5.387 16 N -0.058 5.058 17 N -0.092 5.092 18 N -0.370 5.370 19 C 0.148 3.852 20 H 0.127 0.873 21 C -0.147 4.147 22 C 0.066 3.934 23 O -0.393 6.393 24 C 0.026 3.974 25 H 0.107 0.893 26 H 0.111 0.889 27 H 0.084 0.916 28 H 0.112 0.888 29 H 0.097 0.903 30 H -0.002 1.002 31 H 0.002 0.998 32 H 0.265 0.735 33 H 0.070 0.930 34 H 0.110 0.890 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.053 0.947 38 H 0.048 0.952 39 H 0.108 0.892 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.406 1.146 -18.540 19.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.228 4.228 3 C -0.030 4.030 4 N -0.172 5.172 5 C 0.103 3.897 6 C -0.564 4.564 7 H 0.095 0.905 8 C -0.189 4.189 9 N -0.568 5.568 10 Si 0.795 3.205 11 H -0.194 1.194 12 H -0.216 1.216 13 H -0.185 1.185 14 C 0.071 3.929 15 N -0.246 5.246 16 N -0.054 5.054 17 N -0.079 5.079 18 N -0.171 5.171 19 C 0.046 3.954 20 H 0.145 0.855 21 C -0.205 4.205 22 C -0.012 4.012 23 O -0.311 6.311 24 C -0.070 4.070 25 H 0.125 0.875 26 H 0.129 0.871 27 H 0.102 0.898 28 H 0.130 0.870 29 H 0.115 0.885 30 H 0.017 0.983 31 H 0.020 0.980 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.128 0.872 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.126 0.874 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.170 0.556 -17.983 19.367 hybrid contribution -1.052 0.209 0.439 1.159 sum 6.119 0.765 -17.543 18.595 Atomic orbital electron populations 1.24013 0.95348 1.02935 0.96170 1.23306 0.97596 0.97910 1.04016 1.21567 0.94127 0.96749 0.90556 1.59398 1.16963 1.32455 1.08393 1.19420 0.91099 0.97424 0.81756 1.21308 1.28481 0.98817 1.07835 0.90478 1.25853 0.97242 1.00534 0.95283 1.70129 1.40054 1.34528 1.12111 0.85362 0.78951 0.79126 0.77052 1.19407 1.21561 1.18496 1.23570 0.90918 0.90490 0.87907 1.75042 1.18330 1.02826 1.28360 1.77837 1.00369 1.21035 1.06144 1.82252 1.18544 0.92948 1.14187 1.51591 1.19071 1.17904 1.28563 1.21671 1.01040 0.88608 0.84058 0.85527 1.22040 0.91644 1.03283 1.03501 1.22534 1.00841 0.91413 0.86417 1.87791 1.91416 1.36157 1.15764 1.23013 1.01049 1.01490 0.81473 0.87473 0.87101 0.89834 0.87012 0.88453 0.98343 0.97959 0.92632 0.91144 0.87174 0.92570 0.91357 0.92846 0.93335 0.87389 0.92948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.55 14.32 67.78 0.97 -3.58 16 2 C -0.21 -7.11 7.61 25.65 0.20 -6.92 16 3 C 0.10 3.18 5.53 85.56 0.47 3.65 16 4 N -0.45 -18.33 4.45 -715.76 -3.18 -21.52 16 5 C 0.23 11.69 4.07 85.56 0.35 12.04 16 6 C -0.53 -27.43 8.51 25.60 0.22 -27.21 16 7 H 0.08 3.77 7.54 -2.91 -0.02 3.75 16 8 C 0.01 0.55 5.46 84.65 0.46 1.01 16 9 N -0.93 -54.40 13.29 21.45 0.28 -54.11 16 10 Si 0.97 41.59 29.54 68.60 2.03 43.62 16 11 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 12 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 13 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 14 C 0.44 17.59 5.80 260.65 1.51 19.10 16 15 N -0.39 -17.63 11.31 -58.70 -0.66 -18.29 16 16 N -0.06 -2.43 13.38 37.02 0.50 -1.94 16 17 N -0.09 -3.32 13.82 37.02 0.51 -2.81 16 18 N -0.37 -12.25 3.34 -329.04 -1.10 -13.35 16 19 C 0.15 3.64 2.91 44.99 0.13 3.77 16 20 H 0.13 3.12 7.16 -2.39 -0.02 3.10 16 21 C -0.15 -3.11 9.32 71.98 0.67 -2.44 16 22 C 0.07 1.35 5.64 71.98 0.41 1.75 16 23 O -0.39 -7.21 10.24 -148.98 -1.53 -8.73 16 24 C 0.03 0.31 11.01 113.37 1.25 1.56 16 25 H 0.11 2.97 8.06 -2.91 -0.02 2.95 16 26 H 0.11 3.26 7.84 -2.91 -0.02 3.24 16 27 H 0.08 3.08 7.64 -2.91 -0.02 3.06 16 28 H 0.11 3.73 6.85 -2.39 -0.02 3.72 16 29 H 0.10 2.61 6.97 -2.39 -0.02 2.59 16 30 H 0.00 -0.10 7.82 -2.39 -0.02 -0.11 16 31 H 0.00 0.14 6.87 -2.38 -0.02 0.12 16 32 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 33 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.11 1.85 7.82 -2.39 -0.02 1.83 16 35 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.07 1.35 8.14 -2.39 -0.02 1.34 16 37 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -65.57 340.73 4.50 -61.07 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 1.02 Total: 13.32 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: 6.63 Total: 2.74 kcal Atomic # 7 Polarization: -108.36 SS G_CDS: -3.65 Total: -112.02 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: -1.53 Total: -8.73 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Total: -65.57 4.50 -61.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332956993.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.082 kcal (2) G-P(sol) polarization free energy of solvation -65.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds