Wall clock time and date at job start Tue Mar 31 2020 05:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99347 * 2 1 4 4 N 1.46900 * 109.46802 * 125.03858 * 3 2 1 5 5 C 1.46907 * 110.99630 * 199.29130 * 4 3 2 6 6 C 1.50693 * 109.47316 * 66.04266 * 5 4 3 7 7 H 1.08002 * 119.99874 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00106 * 180.02562 * 6 5 4 9 9 N 1.31517 * 120.00448 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 119.99976 * 0.02562 * 8 6 5 11 11 H 1.48495 * 109.47622 * 89.99741 * 10 8 6 12 12 H 1.48502 * 109.46969 * 210.00225 * 10 8 6 13 13 H 1.48501 * 109.46812 * 329.99469 * 10 8 6 14 14 C 1.38373 * 111.00589 * 75.33433 * 4 3 2 15 15 N 1.31479 * 126.43988 * 58.57619 * 14 4 3 16 16 N 1.28419 * 110.50956 * 180.02562 * 15 14 4 17 17 N 1.28912 * 110.31360 * 359.70775 * 16 15 14 18 18 N 1.35306 * 126.43882 * 238.58094 * 14 4 3 19 19 C 1.46501 * 127.38443 * 359.97438 * 18 14 4 20 20 H 1.09003 * 109.46533 * 1.54721 * 19 18 14 21 21 C 1.52995 * 109.47243 * 241.54674 * 19 18 14 22 22 C 1.53005 * 109.47032 * 121.54576 * 19 18 14 23 23 O 1.42900 * 109.46942 * 185.00262 * 22 19 18 24 24 C 1.42893 * 113.99841 * 180.02562 * 23 22 19 25 25 H 1.07994 * 120.00511 * 359.97438 * 1 2 3 26 26 H 1.08004 * 119.99639 * 180.02562 * 1 2 3 27 27 H 1.07995 * 120.00001 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.47630 * 5.03312 * 3 2 1 29 29 H 1.09006 * 109.46709 * 245.03127 * 3 2 1 30 30 H 1.08994 * 109.47052 * 186.04571 * 5 4 3 31 31 H 1.09004 * 109.46910 * 306.03774 * 5 4 3 32 32 H 0.96995 * 119.99971 * 180.02562 * 9 8 6 33 33 H 1.09006 * 109.47012 * 299.99847 * 21 19 18 34 34 H 1.09001 * 109.47086 * 59.99525 * 21 19 18 35 35 H 1.08996 * 109.47114 * 179.97438 * 21 19 18 36 36 H 1.09002 * 109.47148 * 305.00165 * 22 19 18 37 37 H 1.08994 * 109.47036 * 65.00298 * 22 19 18 38 38 H 1.09004 * 109.47309 * 180.02562 * 24 23 22 39 39 H 1.09000 * 109.47223 * 299.99727 * 24 23 22 40 40 H 1.08995 * 109.47645 * 59.99539 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9968 1.3317 1.1340 5 6 3.4056 2.7076 1.4472 6 6 2.2143 3.4845 1.9452 7 1 1.2498 3.0045 2.0209 8 6 2.3553 4.8085 2.3030 9 7 1.3155 5.4868 2.7371 10 14 4.0230 5.6395 2.1699 11 1 4.1679 6.2460 0.8222 12 1 4.1318 6.6995 3.2041 13 1 5.0953 4.6333 2.3778 14 6 4.0982 0.5308 0.8887 15 7 4.9419 0.6486 -0.1128 16 7 5.8506 -0.2563 -0.0445 17 7 5.6624 -1.0022 0.9900 18 7 4.5093 -0.5208 1.6343 19 6 3.8893 -1.0422 2.8549 20 1 2.9947 -0.4631 3.0838 21 6 4.8789 -0.9328 4.0165 22 6 3.5077 -2.5092 2.6464 23 8 2.7991 -2.9845 3.7928 24 6 2.3950 -4.3520 3.7004 25 1 -0.5401 0.9352 0.0004 26 1 -0.5400 -0.9354 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3585 2.1317 0.0902 29 1 2.6207 1.4029 -0.9317 30 1 4.1764 2.6911 2.2176 31 1 3.7999 3.1828 0.5490 32 1 1.4148 6.4184 2.9884 33 1 5.7735 -1.5119 3.7875 34 1 5.1508 0.1123 4.1649 35 1 4.4174 -1.3203 4.9247 36 1 2.8732 -2.5978 1.7646 37 1 4.4108 -3.1030 2.5055 38 1 1.8634 -4.6360 4.6087 39 1 1.7376 -4.4793 2.8403 40 1 3.2751 -4.9838 3.5815 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332956998.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:40 Heat of formation + Delta-G solvation = 90.297472 kcal Electronic energy + Delta-G solvation = -22912.685052 eV Core-core repulsion = 19573.111754 eV Total energy + Delta-G solvation = -3339.573299 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.16585 -39.40974 -39.23075 -36.86902 -35.04773 -34.46586 -32.61285 -32.33802 -29.74489 -28.47767 -27.06810 -26.68153 -25.41526 -24.36060 -22.45859 -22.03373 -20.85684 -19.20814 -18.48716 -17.97901 -17.40938 -17.12041 -16.96295 -16.54984 -16.34364 -16.02490 -15.46420 -15.15060 -14.73548 -14.50475 -14.42728 -14.06040 -13.79565 -13.71938 -13.30649 -13.06891 -12.98203 -12.82767 -12.69364 -12.45775 -12.23026 -12.15333 -12.07148 -11.91860 -11.63105 -11.52678 -11.20945 -10.84600 -10.77518 -10.47411 -9.89159 -8.32988 -6.37784 -0.21318 0.49008 1.04372 1.31349 1.32407 1.36518 1.42714 2.29100 2.46627 2.71884 3.00175 3.22054 3.45808 3.64382 3.83890 3.86915 4.01868 4.13583 4.23342 4.28067 4.37946 4.42085 4.48902 4.52978 4.55170 4.61406 4.72732 4.79968 4.84866 4.86142 4.95497 5.04549 5.11097 5.31091 5.50853 5.65108 5.84246 5.89235 6.01841 6.33098 6.68224 7.24885 7.29773 8.81667 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.014978 B = 0.005743 C = 0.005491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.904860 B = 4874.457991 C = 5098.309360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.166 4.166 3 C 0.092 3.908 4 N -0.456 5.456 5 C 0.187 3.813 6 C -0.515 4.515 7 H 0.062 0.938 8 C 0.032 3.968 9 N -0.930 5.930 10 Si 0.926 3.074 11 H -0.266 1.266 12 H -0.277 1.277 13 H -0.263 1.263 14 C 0.429 3.571 15 N -0.376 5.376 16 N -0.056 5.056 17 N -0.084 5.084 18 N -0.351 5.351 19 C 0.149 3.851 20 H 0.122 0.878 21 C -0.150 4.150 22 C 0.072 3.928 23 O -0.397 6.397 24 C 0.026 3.974 25 H 0.099 0.901 26 H 0.123 0.877 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.054 0.946 30 H 0.025 0.975 31 H 0.006 0.994 32 H 0.270 0.730 33 H 0.074 0.926 34 H 0.052 0.948 35 H 0.108 0.892 36 H 0.053 0.947 37 H 0.073 0.927 38 H 0.106 0.894 39 H 0.048 0.952 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.814 -17.645 0.656 17.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.184 4.184 3 C -0.034 4.034 4 N -0.183 5.183 5 C 0.061 3.939 6 C -0.553 4.553 7 H 0.080 0.920 8 C -0.168 4.168 9 N -0.569 5.569 10 Si 0.751 3.249 11 H -0.191 1.191 12 H -0.202 1.202 13 H -0.188 1.188 14 C 0.063 3.937 15 N -0.233 5.233 16 N -0.052 5.052 17 N -0.071 5.071 18 N -0.151 5.151 19 C 0.047 3.953 20 H 0.140 0.860 21 C -0.208 4.208 22 C -0.006 4.006 23 O -0.315 6.315 24 C -0.070 4.070 25 H 0.118 0.882 26 H 0.142 0.858 27 H 0.116 0.884 28 H 0.117 0.883 29 H 0.072 0.928 30 H 0.043 0.957 31 H 0.024 0.976 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.126 0.874 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.124 0.876 39 H 0.067 0.933 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.594 -17.933 0.584 18.130 hybrid contribution 0.288 1.057 -0.180 1.110 sum 2.883 -16.877 0.403 17.126 Atomic orbital electron populations 1.24024 0.95007 1.03110 0.97091 1.22613 0.96552 0.96280 1.02996 1.21397 0.94215 0.98351 0.89406 1.59227 1.07445 1.11779 1.39842 1.20054 0.96637 0.81768 0.95455 1.20911 0.95319 0.95225 1.43872 0.92004 1.25465 0.99545 0.97648 0.94179 1.69964 1.31600 1.10408 1.44950 0.86040 0.80954 0.79085 0.78864 1.19106 1.20196 1.18758 1.23408 0.93223 0.89642 0.87442 1.74910 1.04634 1.20723 1.23013 1.77862 1.16143 1.00022 1.11123 1.82357 1.00086 1.19827 1.04807 1.51772 1.19693 1.21709 1.21885 1.21641 0.97881 0.96176 0.79610 0.85983 1.22082 0.98807 1.02779 0.97090 1.22461 0.97018 0.92002 0.89163 1.87808 1.75314 1.29334 1.39068 1.23009 0.99850 0.80411 1.03702 0.88246 0.85847 0.88442 0.88279 0.92780 0.95653 0.97642 0.92031 0.90710 0.92849 0.87382 0.92840 0.90913 0.87604 0.93318 0.92651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.94 14.32 67.78 0.97 -2.97 16 2 C -0.17 -4.92 9.42 25.64 0.24 -4.68 16 3 C 0.09 3.35 5.23 85.56 0.45 3.80 16 4 N -0.46 -18.10 4.20 -715.79 -3.01 -21.10 16 5 C 0.19 8.62 3.72 85.55 0.32 8.93 16 6 C -0.52 -27.19 8.79 25.60 0.23 -26.97 16 7 H 0.06 3.53 7.55 -2.91 -0.02 3.51 16 8 C 0.03 1.73 5.47 84.65 0.46 2.19 16 9 N -0.93 -54.06 13.96 21.45 0.30 -53.76 16 10 Si 0.93 42.41 27.47 68.60 1.88 44.30 16 11 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 12 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 13 H -0.26 -11.75 6.54 99.48 0.65 -11.10 16 14 C 0.43 16.15 6.04 260.65 1.58 17.73 16 15 N -0.38 -14.99 11.83 -58.70 -0.69 -15.68 16 16 N -0.06 -2.09 13.38 37.02 0.50 -1.60 16 17 N -0.08 -2.82 13.85 37.02 0.51 -2.31 16 18 N -0.35 -11.37 3.32 -329.04 -1.09 -12.47 16 19 C 0.15 3.96 3.48 44.99 0.16 4.12 16 20 H 0.12 3.61 7.84 -2.39 -0.02 3.60 16 21 C -0.15 -3.49 9.39 71.98 0.68 -2.81 16 22 C 0.07 1.55 5.60 71.98 0.40 1.95 16 23 O -0.40 -8.19 10.24 -148.98 -1.53 -9.72 16 24 C 0.03 0.35 11.01 113.37 1.25 1.60 16 25 H 0.10 2.65 7.84 -2.91 -0.02 2.63 16 26 H 0.12 2.42 8.06 -2.91 -0.02 2.40 16 27 H 0.10 2.77 8.01 -2.91 -0.02 2.75 16 28 H 0.10 3.93 6.23 -2.39 -0.01 3.92 16 29 H 0.05 1.98 7.69 -2.38 -0.02 1.96 16 30 H 0.03 1.21 7.11 -2.39 -0.02 1.19 16 31 H 0.01 0.27 7.55 -2.38 -0.02 0.25 16 32 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 33 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 34 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.11 2.14 7.82 -2.39 -0.02 2.12 16 36 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.05 0.61 8.14 -2.39 -0.02 0.60 16 Total: -1.00 -61.82 342.49 4.56 -57.26 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 0.96 Total: 12.19 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: 6.73 Total: 2.89 kcal Atomic # 7 Polarization: -103.43 SS G_CDS: -3.49 Total: -106.92 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: -1.53 Total: -9.72 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 1.88 Total: 44.30 kcal Total: -61.82 4.56 -57.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332956998.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.561 kcal (2) G-P(sol) polarization free energy of solvation -61.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds