Wall clock time and date at job start Tue Mar 31 2020 05:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46893 * 109.47045 * 2 1 4 4 C 1.46904 * 111.00473 * 295.75491 * 3 2 1 5 5 C 1.50699 * 109.46896 * 292.80454 * 4 3 2 6 6 H 1.08001 * 119.99913 * 356.73382 * 5 4 3 7 7 C 1.37874 * 120.00340 * 176.73596 * 5 4 3 8 8 N 1.31519 * 119.99625 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00272 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47059 * 60.00158 * 9 7 5 11 11 H 1.48508 * 109.46862 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47071 * 300.00019 * 9 7 5 13 13 C 1.38386 * 110.99921 * 59.70725 * 3 2 1 14 14 N 1.31467 * 126.44173 * 252.36443 * 13 3 2 15 15 N 1.28419 * 110.51359 * 179.81562 * 14 13 3 16 16 N 1.28913 * 110.31387 * 0.46440 * 15 14 13 17 17 N 1.35316 * 126.43663 * 72.68320 * 13 3 2 18 18 C 1.46499 * 127.38189 * 359.97008 * 17 13 3 19 19 C 1.53172 * 109.54769 * 245.92356 * 18 17 13 20 20 C 1.53099 * 109.16112 * 183.24056 * 19 18 17 21 21 O 1.42908 * 109.48473 * 57.47484 * 20 19 18 22 22 C 1.42902 * 114.09917 * 298.89399 * 21 20 19 23 23 C 1.53089 * 109.41858 * 61.15339 * 22 21 20 24 24 H 1.09004 * 109.46920 * 305.45404 * 1 2 3 25 25 H 1.08995 * 109.47295 * 65.45611 * 1 2 3 26 26 H 1.09001 * 109.47023 * 185.46159 * 1 2 3 27 27 H 1.08995 * 109.46476 * 240.00187 * 2 1 3 28 28 H 1.08999 * 109.46978 * 120.00259 * 2 1 3 29 29 H 1.08998 * 109.46980 * 172.80176 * 4 3 2 30 30 H 1.08997 * 109.46946 * 52.80033 * 4 3 2 31 31 H 0.96996 * 120.00362 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.54349 * 6.10770 * 18 17 13 33 33 H 1.09000 * 109.52327 * 303.06662 * 19 18 17 34 34 H 1.09002 * 109.52008 * 63.24785 * 19 18 17 35 35 H 1.08997 * 109.40747 * 297.50137 * 20 19 18 36 36 H 1.08997 * 109.48710 * 177.50347 * 20 19 18 37 37 H 1.09001 * 109.47887 * 301.17163 * 22 21 20 38 38 H 1.08998 * 109.47664 * 181.13866 * 22 21 20 39 39 H 1.08990 * 109.52577 * 182.48553 * 23 22 21 40 40 H 1.09009 * 109.57319 * 62.32811 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6334 2.0800 -1.2352 5 6 2.3613 1.4684 -2.4044 6 1 3.0820 0.6811 -2.2398 7 6 2.1072 1.9138 -3.6842 8 7 1.2291 2.8722 -3.8847 9 14 3.0099 1.1561 -5.1334 10 1 2.7153 -0.2980 -5.1947 11 1 2.5600 1.8052 -6.3911 12 1 4.4715 1.3585 -4.9668 13 6 1.5706 2.0697 1.1156 14 7 0.6509 3.0089 1.1375 15 7 0.4694 3.4331 2.3360 16 7 1.2521 2.8150 3.1528 17 7 1.9998 1.9026 2.3879 18 6 3.0236 0.9702 2.8660 19 6 2.3767 -0.0794 3.7749 20 6 3.4651 -0.9997 4.3337 21 8 4.4350 -0.2194 5.0357 22 6 5.1061 0.7459 4.2233 23 6 4.0839 1.7375 3.6618 24 1 -0.3633 0.5961 0.8372 25 1 -0.3633 0.4269 -0.9348 26 1 -0.3633 -1.0230 0.0978 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.8955 3.1350 -1.1556 30 1 0.5582 1.9830 -1.3856 31 1 1.0505 3.1859 -4.7849 32 1 3.4929 0.4763 2.0151 33 1 1.8638 0.4180 4.5981 34 1 1.6606 -0.6670 3.2004 35 1 3.9493 -1.5282 3.5126 36 1 3.0161 -1.7212 5.0162 37 1 5.6117 0.2401 3.4007 38 1 5.8392 1.2817 4.8263 39 1 4.5877 2.4481 3.0066 40 1 3.6065 2.2737 4.4821 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332989705.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:59 Heat of formation + Delta-G solvation = 77.565270 kcal Electronic energy + Delta-G solvation = -23213.420159 eV Core-core repulsion = 19873.294750 eV Total energy + Delta-G solvation = -3340.125408 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.53555 -39.58859 -37.74544 -35.49669 -32.82680 -31.68790 -31.49197 -31.29335 -29.52276 -26.99713 -25.73294 -23.97705 -23.74895 -22.60068 -22.41619 -20.30334 -20.10434 -17.47792 -16.55560 -16.41721 -16.15185 -15.94766 -15.89260 -15.10024 -14.83114 -14.29007 -14.19019 -13.98618 -13.66554 -13.31872 -12.76304 -12.47492 -12.27431 -12.16083 -11.74412 -11.67248 -11.59618 -11.53796 -11.30551 -10.96526 -10.82678 -10.75124 -10.56139 -10.43613 -10.29378 -10.02607 -9.94749 -9.79920 -9.45416 -8.60348 -7.98683 -6.16899 -4.22779 1.46064 2.07157 2.82335 3.23603 3.29483 3.30395 3.55090 4.05776 4.15127 4.33458 4.37617 4.58988 4.66281 4.88664 4.94487 5.01607 5.12671 5.18376 5.26089 5.35399 5.36366 5.45423 5.48831 5.57098 5.65076 5.72386 5.79201 5.85867 6.02642 6.05100 6.25526 6.41068 6.55027 6.84771 6.97061 7.15286 7.46294 7.58309 7.87315 8.16492 8.80464 9.04914 9.41667 10.92994 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.019971 B = 0.005103 C = 0.004623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.700695 B = 5485.623976 C = 6054.862884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.064 3.936 3 N -0.457 5.457 4 C 0.203 3.797 5 C -0.525 4.525 6 H 0.065 0.935 7 C 0.063 3.937 8 N -0.886 5.886 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.442 3.558 14 N -0.354 5.354 15 N -0.040 5.040 16 N -0.107 5.107 17 N -0.388 5.388 18 C 0.161 3.839 19 C -0.167 4.167 20 C 0.067 3.933 21 O -0.380 6.380 22 C 0.066 3.934 23 C -0.162 4.162 24 H 0.043 0.957 25 H 0.079 0.921 26 H 0.059 0.941 27 H 0.109 0.891 28 H 0.057 0.943 29 H 0.040 0.960 30 H 0.028 0.972 31 H 0.266 0.734 32 H 0.116 0.884 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.057 0.943 36 H 0.102 0.898 37 H 0.058 0.942 38 H 0.103 0.897 39 H 0.084 0.916 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.391 -9.093 13.490 17.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.063 4.063 3 N -0.182 5.182 4 C 0.080 3.920 5 C -0.564 4.564 6 H 0.083 0.917 7 C -0.140 4.140 8 N -0.524 5.524 9 Si 0.729 3.271 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.201 1.201 13 C 0.077 3.923 14 N -0.212 5.212 15 N -0.037 5.037 16 N -0.094 5.094 17 N -0.188 5.188 18 C 0.057 3.943 19 C -0.205 4.205 20 C -0.011 4.011 21 O -0.299 6.299 22 C -0.011 4.011 23 C -0.201 4.201 24 H 0.062 0.938 25 H 0.098 0.902 26 H 0.078 0.922 27 H 0.127 0.873 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.046 0.954 31 H 0.076 0.924 32 H 0.134 0.866 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.076 0.924 36 H 0.120 0.880 37 H 0.076 0.924 38 H 0.121 0.879 39 H 0.103 0.897 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.053 -8.067 14.147 17.052 hybrid contribution 0.277 -0.797 -1.526 1.744 sum 5.330 -8.864 12.621 16.318 Atomic orbital electron populations 1.22405 0.96993 1.01622 1.03376 1.22213 0.93913 0.87005 1.03151 1.59413 1.54453 1.03350 1.00968 1.19967 0.96945 0.94146 0.80977 1.20958 1.24053 1.21252 0.90100 0.91662 1.24948 0.95180 0.95004 0.98896 1.69963 1.32933 1.27221 1.22254 0.86508 0.80014 0.79252 0.81331 1.20126 1.21165 1.20113 1.23759 0.88731 0.93883 0.85962 1.75103 1.16895 1.15831 1.13347 1.77857 1.13918 1.16157 0.95727 1.82360 1.07007 1.03840 1.16216 1.51507 1.31129 1.30312 1.05859 1.21517 0.86135 0.88092 0.98543 1.22644 0.99673 0.97777 1.00431 1.22559 0.88680 0.92676 0.97152 1.87959 1.54238 1.50812 1.36842 1.22586 0.93670 0.89496 0.95369 1.22546 0.96980 0.99402 1.01173 0.93756 0.90212 0.92206 0.87264 0.92464 0.94166 0.95400 0.92449 0.86618 0.89446 0.90037 0.92434 0.87999 0.92383 0.87930 0.89746 0.89306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.09 9.31 37.16 0.35 -2.75 16 2 C 0.06 1.06 5.76 -3.82 -0.02 1.04 16 3 N -0.46 -9.14 4.49 -176.23 -0.79 -9.93 16 4 C 0.20 5.00 3.98 -4.97 -0.02 4.98 16 5 C -0.53 -13.50 8.40 -34.44 -0.29 -13.79 16 6 H 0.07 1.60 7.33 -52.49 -0.38 1.22 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -25.20 13.29 55.43 0.74 -24.46 16 9 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 16 10 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 11 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 13 C 0.44 8.74 5.51 -320.41 -1.77 6.98 16 14 N -0.35 -7.84 11.21 30.10 0.34 -7.50 16 15 N -0.04 -0.85 13.38 60.35 0.81 -0.04 16 16 N -0.11 -1.98 13.80 60.35 0.83 -1.15 16 17 N -0.39 -6.51 3.35 -55.17 -0.19 -6.69 16 18 C 0.16 2.00 2.51 -67.75 -0.17 1.83 16 19 C -0.17 -1.72 5.75 -26.59 -0.15 -1.87 16 20 C 0.07 0.56 6.84 37.21 0.25 0.81 16 21 O -0.38 -3.84 10.77 -35.23 -0.38 -4.22 16 22 C 0.07 0.58 6.84 37.20 0.25 0.84 16 23 C -0.16 -1.79 5.64 -26.59 -0.15 -1.94 16 24 H 0.04 0.79 6.92 -51.93 -0.36 0.43 16 25 H 0.08 1.54 6.63 -51.93 -0.34 1.19 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.11 1.86 6.90 -51.93 -0.36 1.50 16 28 H 0.06 0.77 6.65 -51.93 -0.35 0.42 16 29 H 0.04 1.12 7.96 -51.93 -0.41 0.71 16 30 H 0.03 0.74 6.21 -51.93 -0.32 0.42 16 31 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.12 1.40 7.18 -51.93 -0.37 1.03 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.08 0.81 7.87 -51.93 -0.41 0.40 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.09 1.07 8.14 -51.92 -0.42 0.65 16 LS Contribution 324.24 15.07 4.89 4.89 Total: -1.00 -30.23 324.24 -6.41 -36.64 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -5.83 Total: -0.48 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -1.81 Total: -2.29 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: 1.74 Total: -49.78 kcal Atomic # 8 Polarization: -3.84 SS G_CDS: -0.38 Total: -4.22 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.23 -6.41 -36.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332989705.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.207 kcal (2) G-P(sol) polarization free energy of solvation -30.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds