Wall clock time and date at job start Tue Mar 31 2020 05:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46893 * 109.47045 * 2 1 4 4 C 1.46904 * 111.00473 * 295.75491 * 3 2 1 5 5 C 1.50699 * 109.46896 * 292.80454 * 4 3 2 6 6 H 1.08001 * 119.99913 * 356.73382 * 5 4 3 7 7 C 1.37874 * 120.00340 * 176.73596 * 5 4 3 8 8 N 1.31519 * 119.99625 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00272 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47059 * 60.00158 * 9 7 5 11 11 H 1.48508 * 109.46862 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47071 * 300.00019 * 9 7 5 13 13 C 1.38386 * 110.99921 * 59.70725 * 3 2 1 14 14 N 1.31467 * 126.44173 * 252.36443 * 13 3 2 15 15 N 1.28419 * 110.51359 * 179.81562 * 14 13 3 16 16 N 1.28913 * 110.31387 * 0.46440 * 15 14 13 17 17 N 1.35316 * 126.43663 * 72.68320 * 13 3 2 18 18 C 1.46499 * 127.38189 * 359.97008 * 17 13 3 19 19 C 1.53172 * 109.54769 * 245.92356 * 18 17 13 20 20 C 1.53099 * 109.16112 * 183.24056 * 19 18 17 21 21 O 1.42908 * 109.48473 * 57.47484 * 20 19 18 22 22 C 1.42902 * 114.09917 * 298.89399 * 21 20 19 23 23 C 1.53089 * 109.41858 * 61.15339 * 22 21 20 24 24 H 1.09004 * 109.46920 * 305.45404 * 1 2 3 25 25 H 1.08995 * 109.47295 * 65.45611 * 1 2 3 26 26 H 1.09001 * 109.47023 * 185.46159 * 1 2 3 27 27 H 1.08995 * 109.46476 * 240.00187 * 2 1 3 28 28 H 1.08999 * 109.46978 * 120.00259 * 2 1 3 29 29 H 1.08998 * 109.46980 * 172.80176 * 4 3 2 30 30 H 1.08997 * 109.46946 * 52.80033 * 4 3 2 31 31 H 0.96996 * 120.00362 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.54349 * 6.10770 * 18 17 13 33 33 H 1.09000 * 109.52327 * 303.06662 * 19 18 17 34 34 H 1.09002 * 109.52008 * 63.24785 * 19 18 17 35 35 H 1.08997 * 109.40747 * 297.50137 * 20 19 18 36 36 H 1.08997 * 109.48710 * 177.50347 * 20 19 18 37 37 H 1.09001 * 109.47887 * 301.17163 * 22 21 20 38 38 H 1.08998 * 109.47664 * 181.13866 * 22 21 20 39 39 H 1.08990 * 109.52577 * 182.48553 * 23 22 21 40 40 H 1.09009 * 109.57319 * 62.32811 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6334 2.0800 -1.2352 5 6 2.3613 1.4684 -2.4044 6 1 3.0820 0.6811 -2.2398 7 6 2.1072 1.9138 -3.6842 8 7 1.2291 2.8722 -3.8847 9 14 3.0099 1.1561 -5.1334 10 1 2.7153 -0.2980 -5.1947 11 1 2.5600 1.8052 -6.3911 12 1 4.4715 1.3585 -4.9668 13 6 1.5706 2.0697 1.1156 14 7 0.6509 3.0089 1.1375 15 7 0.4694 3.4331 2.3360 16 7 1.2521 2.8150 3.1528 17 7 1.9998 1.9026 2.3879 18 6 3.0236 0.9702 2.8660 19 6 2.3767 -0.0794 3.7749 20 6 3.4651 -0.9997 4.3337 21 8 4.4350 -0.2194 5.0357 22 6 5.1061 0.7459 4.2233 23 6 4.0839 1.7375 3.6618 24 1 -0.3633 0.5961 0.8372 25 1 -0.3633 0.4269 -0.9348 26 1 -0.3633 -1.0230 0.0978 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.8955 3.1350 -1.1556 30 1 0.5582 1.9830 -1.3856 31 1 1.0505 3.1859 -4.7849 32 1 3.4929 0.4763 2.0151 33 1 1.8638 0.4180 4.5981 34 1 1.6606 -0.6670 3.2004 35 1 3.9493 -1.5282 3.5126 36 1 3.0161 -1.7212 5.0162 37 1 5.6117 0.2401 3.4007 38 1 5.8392 1.2817 4.8263 39 1 4.5877 2.4481 3.0066 40 1 3.6065 2.2737 4.4821 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332989705.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:59 Heat of formation + Delta-G solvation = 56.981461 kcal Electronic energy + Delta-G solvation = -23214.312740 eV Core-core repulsion = 19873.294750 eV Total energy + Delta-G solvation = -3341.017989 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.07093 -40.40823 -39.33986 -36.62681 -34.80999 -32.88583 -32.82002 -32.23702 -31.14960 -28.83913 -26.86863 -25.40946 -24.68704 -24.15181 -23.82115 -21.70084 -21.25471 -18.74225 -18.25987 -17.95123 -17.59424 -16.99075 -16.87073 -16.52581 -15.86704 -15.82554 -15.25398 -15.13424 -15.06247 -14.74424 -14.07230 -13.93338 -13.60845 -13.49994 -13.30553 -13.02840 -12.79219 -12.68434 -12.63118 -12.50231 -12.36495 -12.11046 -12.07400 -11.95745 -11.57343 -11.44995 -11.31701 -11.22556 -10.71112 -10.61457 -9.67224 -8.20443 -6.33889 -0.04013 0.69909 1.22319 1.46900 1.49494 1.57403 2.37505 2.65466 2.90036 3.06647 3.14171 3.46012 3.53385 3.73345 3.82786 3.92690 4.07088 4.12334 4.18393 4.19893 4.28911 4.39129 4.49141 4.59640 4.62578 4.63765 4.76768 4.80419 4.92949 4.94272 4.98597 5.05047 5.13768 5.27610 5.31544 5.55236 5.76500 5.89353 6.18178 6.25535 6.78630 7.35517 7.48034 8.90702 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.019971 B = 0.005103 C = 0.004623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.700695 B = 5485.623976 C = 6054.862884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.060 3.940 3 N -0.451 5.451 4 C 0.224 3.776 5 C -0.529 4.529 6 H 0.081 0.919 7 C 0.008 3.992 8 N -0.931 5.931 9 Si 0.974 3.026 10 H -0.259 1.259 11 H -0.290 1.290 12 H -0.268 1.268 13 C 0.433 3.567 14 N -0.393 5.393 15 N -0.062 5.062 16 N -0.096 5.096 17 N -0.368 5.368 18 C 0.145 3.855 19 C -0.159 4.159 20 C 0.069 3.931 21 O -0.394 6.394 22 C 0.071 3.929 23 C -0.158 4.158 24 H 0.028 0.972 25 H 0.044 0.956 26 H 0.096 0.904 27 H 0.110 0.890 28 H 0.099 0.901 29 H -0.004 1.004 30 H 0.001 0.999 31 H 0.265 0.735 32 H 0.127 0.873 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.121 0.879 37 H 0.075 0.925 38 H 0.118 0.882 39 H 0.077 0.923 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.358 -12.026 14.151 19.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.065 4.065 3 N -0.176 5.176 4 C 0.100 3.900 5 C -0.567 4.567 6 H 0.099 0.901 7 C -0.192 4.192 8 N -0.570 5.570 9 Si 0.798 3.202 10 H -0.184 1.184 11 H -0.216 1.216 12 H -0.192 1.192 13 C 0.068 3.932 14 N -0.251 5.251 15 N -0.058 5.058 16 N -0.084 5.084 17 N -0.168 5.168 18 C 0.044 3.956 19 C -0.198 4.198 20 C -0.008 4.008 21 O -0.313 6.313 22 C -0.006 4.006 23 C -0.197 4.197 24 H 0.047 0.953 25 H 0.063 0.937 26 H 0.115 0.885 27 H 0.128 0.872 28 H 0.117 0.883 29 H 0.014 0.986 30 H 0.019 0.981 31 H 0.074 0.926 32 H 0.145 0.855 33 H 0.091 0.909 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.139 0.861 37 H 0.093 0.907 38 H 0.136 0.864 39 H 0.096 0.904 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.041 -11.036 14.854 19.799 hybrid contribution -0.320 0.102 -1.602 1.637 sum 6.720 -10.934 13.252 18.448 Atomic orbital electron populations 1.22307 0.97183 1.03234 1.00785 1.22434 0.93773 0.85099 1.05204 1.59352 1.54481 1.04439 0.99361 1.19426 0.95162 0.92279 0.83174 1.21307 1.23868 1.21164 0.90376 0.90134 1.25916 0.95860 0.95298 1.02088 1.70129 1.34931 1.29105 1.22816 0.85368 0.78753 0.78956 0.77142 1.18369 1.21629 1.19249 1.23598 0.88981 0.93832 0.86823 1.74994 1.18627 1.17141 1.14345 1.77835 1.15128 1.17302 0.95567 1.82246 1.06403 1.03509 1.16222 1.51771 1.30782 1.29831 1.04450 1.22106 0.85687 0.88127 0.99665 1.22642 1.00421 0.97305 0.99456 1.22717 0.87829 0.92142 0.98160 1.87956 1.54560 1.51042 1.37733 1.22664 0.92934 0.88975 0.96048 1.22546 0.97020 0.99818 1.00336 0.95313 0.93666 0.88505 0.87174 0.88275 0.98555 0.98148 0.92591 0.85486 0.90900 0.89263 0.90427 0.86119 0.90657 0.86401 0.90419 0.90672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.77 9.31 71.98 0.67 -5.10 16 2 C 0.06 1.90 5.76 86.31 0.50 2.39 16 3 N -0.45 -18.01 4.49 -711.45 -3.19 -21.21 16 4 C 0.22 11.46 3.98 85.56 0.34 11.80 16 5 C -0.53 -27.25 8.40 25.60 0.21 -27.03 16 6 H 0.08 3.82 7.33 -2.91 -0.02 3.80 16 7 C 0.01 0.41 5.46 84.65 0.46 0.88 16 8 N -0.93 -54.49 13.29 21.45 0.28 -54.21 16 9 Si 0.97 41.11 29.54 68.60 2.03 43.14 16 10 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 11 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 12 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 13 C 0.43 17.30 5.51 260.65 1.44 18.74 16 14 N -0.39 -18.10 11.21 -58.69 -0.66 -18.75 16 15 N -0.06 -2.69 13.38 37.02 0.50 -2.19 16 16 N -0.10 -3.58 13.80 37.02 0.51 -3.07 16 17 N -0.37 -12.09 3.35 -328.46 -1.10 -13.19 16 18 C 0.15 3.30 2.51 45.11 0.11 3.42 16 19 C -0.16 -2.84 5.75 30.68 0.18 -2.66 16 20 C 0.07 0.88 6.84 72.02 0.49 1.37 16 21 O -0.39 -6.67 10.77 -148.98 -1.60 -8.27 16 22 C 0.07 1.03 6.84 72.01 0.49 1.52 16 23 C -0.16 -3.21 5.64 30.68 0.17 -3.04 16 24 H 0.03 1.01 6.92 -2.38 -0.02 0.99 16 25 H 0.04 1.78 6.63 -2.39 -0.02 1.77 16 26 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 27 H 0.11 3.49 6.90 -2.39 -0.02 3.47 16 28 H 0.10 2.29 6.65 -2.39 -0.02 2.27 16 29 H 0.00 -0.22 7.96 -2.39 -0.02 -0.24 16 30 H 0.00 0.04 6.21 -2.39 -0.01 0.02 16 31 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 32 H 0.13 2.66 7.18 -2.38 -0.02 2.64 16 33 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.09 1.47 7.87 -2.39 -0.02 1.45 16 35 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 Total: -1.00 -68.25 324.24 2.87 -65.38 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: 1.04 Total: 10.08 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: 5.07 Total: 2.29 kcal Atomic # 7 Polarization: -108.96 SS G_CDS: -3.66 Total: -112.62 kcal Atomic # 8 Polarization: -6.67 SS G_CDS: -1.60 Total: -8.27 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Total: -68.25 2.87 -65.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332989705.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.365 kcal (2) G-P(sol) polarization free energy of solvation -68.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds