Wall clock time and date at job start Tue Mar 31 2020 05:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42894 * 114.00302 * 2 1 4 4 C 1.52996 * 109.47304 * 180.02562 * 3 2 1 5 5 N 1.46892 * 109.47471 * 64.99620 * 4 3 2 6 6 C 1.46903 * 111.00405 * 193.95284 * 5 4 3 7 7 C 1.50700 * 109.46919 * 71.78791 * 6 5 4 8 8 H 1.08000 * 119.99912 * 0.02562 * 7 6 5 9 9 C 1.37871 * 119.99878 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00232 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 119.99713 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47346 * 60.00032 * 11 9 7 13 13 H 1.48507 * 109.46889 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.46945 * 299.99467 * 11 9 7 15 15 C 1.38383 * 110.99757 * 69.99973 * 5 4 3 16 16 N 1.31475 * 126.43687 * 58.42637 * 15 5 4 17 17 N 1.28426 * 110.50646 * 180.25955 * 16 15 5 18 18 N 1.28909 * 110.31764 * 359.74191 * 17 16 15 19 19 N 1.35303 * 126.44048 * 238.24939 * 15 5 4 20 20 C 1.46499 * 127.38117 * 0.03003 * 19 15 5 21 21 C 1.53789 * 113.61339 * 219.09125 * 20 19 15 22 22 C 1.53955 * 87.01837 * 220.04730 * 21 20 19 23 23 C 1.53781 * 87.11281 * 25.36254 * 22 21 20 24 24 H 1.08993 * 109.47082 * 59.99947 * 1 2 3 25 25 H 1.09005 * 109.46876 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.46879 * 299.99787 * 1 2 3 27 27 H 1.09001 * 109.46896 * 59.99896 * 3 2 1 28 28 H 1.09004 * 109.46685 * 300.00101 * 3 2 1 29 29 H 1.09003 * 109.47199 * 304.99497 * 4 3 2 30 30 H 1.09002 * 109.47092 * 184.99965 * 4 3 2 31 31 H 1.08996 * 109.47420 * 191.78752 * 6 5 4 32 32 H 1.08996 * 109.46851 * 311.79171 * 6 5 4 33 33 H 0.96998 * 120.00036 * 179.97438 * 10 9 7 34 34 H 1.08994 * 112.85157 * 350.28432 * 20 19 15 35 35 H 1.09004 * 113.61212 * 334.56991 * 21 20 19 36 36 H 1.09000 * 113.60886 * 105.46850 * 21 20 19 37 37 H 1.09003 * 113.53604 * 270.80847 * 22 21 20 38 38 H 1.08999 * 113.73684 * 139.94875 * 22 21 20 39 39 H 1.08995 * 113.61558 * 220.08379 * 23 22 21 40 40 H 1.09003 * 113.60901 * 89.18503 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9769 0.5626 -1.2560 6 6 5.3774 0.1286 -1.1647 7 6 5.4728 -1.0737 -0.2611 8 1 4.5821 -1.4754 0.1990 9 6 6.6971 -1.6606 -0.0216 10 7 7.7818 -1.1711 -0.5814 11 14 6.8152 -3.1514 1.0979 12 1 5.9911 -4.2545 0.5420 13 1 8.2310 -3.5900 1.1904 14 1 6.3176 -2.7949 2.4509 15 6 3.7924 1.4203 -2.3261 16 7 4.3090 2.6217 -2.4621 17 7 3.9331 3.1503 -3.5705 18 7 3.1669 2.3392 -4.2161 19 7 3.0490 1.1791 -3.4306 20 6 2.2807 -0.0295 -3.7391 21 6 2.3508 -0.4432 -5.2186 22 6 0.8543 -0.7879 -5.1100 23 6 0.7821 0.2334 -3.9625 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6886 1.8463 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 3.8515 0.5681 0.8410 30 1 3.9786 2.1764 0.0889 31 1 5.7421 -0.1335 -2.1578 32 1 5.9828 0.9383 -0.7572 33 1 8.6432 -1.5838 -0.4126 34 1 2.4821 -0.8472 -3.0472 35 1 2.5600 0.3861 -5.8944 36 1 2.9873 -1.3093 -5.4001 37 1 0.6658 -1.8139 -4.7939 38 1 0.2733 -0.5016 -5.9866 39 1 0.1539 -0.0872 -3.1315 40 1 0.5615 1.2480 -4.2944 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333002328.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:01 Heat of formation + Delta-G solvation = 105.214554 kcal Electronic energy + Delta-G solvation = -23302.850778 eV Core-core repulsion = 19963.924333 eV Total energy + Delta-G solvation = -3338.926446 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.49196 -38.78089 -38.12043 -36.59422 -33.17651 -32.73714 -30.98155 -29.60265 -26.94224 -26.18396 -25.82063 -25.67918 -22.96921 -22.58485 -22.55174 -20.26209 -19.50062 -17.50809 -16.70929 -16.45699 -16.00852 -15.67292 -15.63152 -15.35245 -14.66968 -14.41740 -13.86683 -13.66614 -13.19383 -12.87347 -12.74505 -12.60432 -12.34218 -12.09465 -11.83197 -11.68392 -11.44743 -11.29634 -10.96758 -10.92287 -10.81919 -10.61053 -10.55485 -10.44921 -10.21767 -9.82040 -9.65224 -9.48302 -9.34410 -8.59508 -8.05050 -6.14180 -4.18391 1.44399 2.18693 2.76911 3.28678 3.33280 3.35717 3.96462 4.14128 4.26462 4.39924 4.42795 4.65801 4.73632 5.01089 5.15828 5.21506 5.26497 5.34855 5.43269 5.47614 5.50320 5.54298 5.60237 5.65591 5.67812 5.75863 5.83199 5.94577 5.99517 6.02842 6.24014 6.35878 6.55345 6.91967 7.07739 7.34479 7.54983 7.63909 7.91186 8.22278 8.88671 8.98485 9.46403 10.96269 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.014189 B = 0.006241 C = 0.005813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.916304 B = 4485.205042 C = 4815.696096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.365 6.365 3 C 0.066 3.934 4 C 0.069 3.931 5 N -0.460 5.460 6 C 0.207 3.793 7 C -0.515 4.515 8 H 0.072 0.928 9 C 0.060 3.940 10 N -0.893 5.893 11 Si 0.904 3.096 12 H -0.275 1.275 13 H -0.288 1.288 14 H -0.275 1.275 15 C 0.436 3.564 16 N -0.363 5.363 17 N -0.048 5.048 18 N -0.104 5.104 19 N -0.358 5.358 20 C 0.134 3.866 21 C -0.143 4.143 22 C -0.134 4.134 23 C -0.141 4.141 24 H 0.033 0.967 25 H 0.083 0.917 26 H 0.035 0.965 27 H 0.053 0.947 28 H 0.033 0.967 29 H 0.114 0.886 30 H 0.064 0.936 31 H 0.030 0.970 32 H 0.017 0.983 33 H 0.265 0.735 34 H 0.146 0.854 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.412 0.734 -3.348 15.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.283 6.283 3 C -0.011 4.011 4 C -0.058 4.058 5 N -0.189 5.189 6 C 0.084 3.916 7 C -0.554 4.554 8 H 0.090 0.910 9 C -0.143 4.143 10 N -0.532 5.532 11 Si 0.731 3.269 12 H -0.201 1.201 13 H -0.213 1.213 14 H -0.200 1.200 15 C 0.071 3.929 16 N -0.220 5.220 17 N -0.044 5.044 18 N -0.091 5.091 19 N -0.155 5.155 20 C 0.031 3.969 21 C -0.181 4.181 22 C -0.172 4.172 23 C -0.180 4.180 24 H 0.051 0.949 25 H 0.102 0.898 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.051 0.949 29 H 0.132 0.868 30 H 0.082 0.918 31 H 0.048 0.952 32 H 0.035 0.965 33 H 0.075 0.925 34 H 0.164 0.836 35 H 0.114 0.886 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -15.156 1.318 -4.124 15.762 hybrid contribution 0.210 -0.826 0.936 1.266 sum -14.946 0.492 -3.188 15.290 Atomic orbital electron populations 1.22713 0.82485 1.02342 0.99213 1.88086 1.18134 1.27017 1.95108 1.22623 0.94477 0.84944 0.99079 1.22226 0.91860 0.99586 0.92142 1.59492 1.28450 1.31822 0.99128 1.19919 0.77034 0.96179 0.98456 1.21015 0.93820 1.12239 1.28323 0.90964 1.24977 0.95440 0.97621 0.96220 1.69958 0.98743 1.40972 1.43502 0.86468 0.76919 0.82543 0.80946 1.20080 1.21334 1.20025 1.23650 0.88944 0.90221 0.90103 1.74961 1.24886 1.08280 1.13871 1.77841 1.05597 1.20904 1.00016 1.82346 1.19943 0.90419 1.16360 1.51620 1.34960 1.14589 1.14348 1.23385 0.90561 0.83895 0.99076 1.23391 0.97414 1.02572 0.94722 1.22710 0.96194 0.99498 0.98829 1.23361 0.94434 1.00803 0.99369 0.94860 0.89803 0.94637 0.92860 0.94917 0.86757 0.91767 0.95157 0.96537 0.92544 0.83630 0.88597 0.90026 0.89300 0.90377 0.90286 0.89247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.37 -5.71 10.65 -35.23 -0.38 -6.08 16 3 C 0.07 1.01 6.06 37.16 0.23 1.24 16 4 C 0.07 1.27 5.16 -3.83 -0.02 1.25 16 5 N -0.46 -9.58 4.34 -176.23 -0.76 -10.34 16 6 C 0.21 5.20 4.68 -4.97 -0.02 5.18 16 7 C -0.52 -13.57 8.40 -34.44 -0.29 -13.86 16 8 H 0.07 1.87 7.61 -52.49 -0.40 1.47 16 9 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 10 N -0.89 -25.70 13.29 55.43 0.74 -24.96 16 11 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 12 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 13 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 14 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 15 C 0.44 8.86 5.43 -320.42 -1.74 7.12 16 16 N -0.36 -7.83 11.90 30.10 0.36 -7.47 16 17 N -0.05 -0.98 13.38 60.35 0.81 -0.18 16 18 N -0.10 -1.95 13.49 60.35 0.81 -1.14 16 19 N -0.36 -6.40 3.74 -54.56 -0.20 -6.61 16 20 C 0.13 1.91 4.73 -67.11 -0.32 1.59 16 21 C -0.14 -1.70 7.80 -25.82 -0.20 -1.90 16 22 C -0.13 -1.24 8.09 -25.83 -0.21 -1.45 16 23 C -0.14 -1.57 7.88 -25.92 -0.20 -1.77 16 24 H 0.03 0.34 8.06 -51.93 -0.42 -0.08 16 25 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.03 0.52 7.39 -51.93 -0.38 0.13 16 29 H 0.11 2.20 7.06 -51.93 -0.37 1.83 16 30 H 0.06 1.17 7.82 -51.93 -0.41 0.77 16 31 H 0.03 0.84 7.97 -51.93 -0.41 0.43 16 32 H 0.02 0.45 8.05 -51.93 -0.42 0.04 16 33 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 34 H 0.15 2.22 8.08 -51.93 -0.42 1.80 16 35 H 0.10 1.22 7.82 -51.93 -0.41 0.81 16 36 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.80 8.06 -51.93 -0.42 0.38 16 40 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 339.54 15.07 5.12 5.12 Total: -1.00 -30.21 339.54 -6.44 -36.64 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -6.14 Total: -1.09 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -1.76 Total: 0.38 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: 1.75 Total: -50.70 kcal Atomic # 8 Polarization: -5.71 SS G_CDS: -0.38 Total: -6.08 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.21 -6.44 -36.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333002328.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.858 kcal (2) G-P(sol) polarization free energy of solvation -30.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds