Wall clock time and date at job start Tue Mar 31 2020 05:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42894 * 114.00302 * 2 1 4 4 C 1.52996 * 109.47304 * 180.02562 * 3 2 1 5 5 N 1.46892 * 109.47471 * 64.99620 * 4 3 2 6 6 C 1.46903 * 111.00405 * 193.95284 * 5 4 3 7 7 C 1.50700 * 109.46919 * 71.78791 * 6 5 4 8 8 H 1.08000 * 119.99912 * 0.02562 * 7 6 5 9 9 C 1.37871 * 119.99878 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00232 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 119.99713 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47346 * 60.00032 * 11 9 7 13 13 H 1.48507 * 109.46889 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.46945 * 299.99467 * 11 9 7 15 15 C 1.38383 * 110.99757 * 69.99973 * 5 4 3 16 16 N 1.31475 * 126.43687 * 58.42637 * 15 5 4 17 17 N 1.28426 * 110.50646 * 180.25955 * 16 15 5 18 18 N 1.28909 * 110.31764 * 359.74191 * 17 16 15 19 19 N 1.35303 * 126.44048 * 238.24939 * 15 5 4 20 20 C 1.46499 * 127.38117 * 0.03003 * 19 15 5 21 21 C 1.53789 * 113.61339 * 219.09125 * 20 19 15 22 22 C 1.53955 * 87.01837 * 220.04730 * 21 20 19 23 23 C 1.53781 * 87.11281 * 25.36254 * 22 21 20 24 24 H 1.08993 * 109.47082 * 59.99947 * 1 2 3 25 25 H 1.09005 * 109.46876 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.46879 * 299.99787 * 1 2 3 27 27 H 1.09001 * 109.46896 * 59.99896 * 3 2 1 28 28 H 1.09004 * 109.46685 * 300.00101 * 3 2 1 29 29 H 1.09003 * 109.47199 * 304.99497 * 4 3 2 30 30 H 1.09002 * 109.47092 * 184.99965 * 4 3 2 31 31 H 1.08996 * 109.47420 * 191.78752 * 6 5 4 32 32 H 1.08996 * 109.46851 * 311.79171 * 6 5 4 33 33 H 0.96998 * 120.00036 * 179.97438 * 10 9 7 34 34 H 1.08994 * 112.85157 * 350.28432 * 20 19 15 35 35 H 1.09004 * 113.61212 * 334.56991 * 21 20 19 36 36 H 1.09000 * 113.60886 * 105.46850 * 21 20 19 37 37 H 1.09003 * 113.53604 * 270.80847 * 22 21 20 38 38 H 1.08999 * 113.73684 * 139.94875 * 22 21 20 39 39 H 1.08995 * 113.61558 * 220.08379 * 23 22 21 40 40 H 1.09003 * 113.60901 * 89.18503 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9769 0.5626 -1.2560 6 6 5.3774 0.1286 -1.1647 7 6 5.4728 -1.0737 -0.2611 8 1 4.5821 -1.4754 0.1990 9 6 6.6971 -1.6606 -0.0216 10 7 7.7818 -1.1711 -0.5814 11 14 6.8152 -3.1514 1.0979 12 1 5.9911 -4.2545 0.5420 13 1 8.2310 -3.5900 1.1904 14 1 6.3176 -2.7949 2.4509 15 6 3.7924 1.4203 -2.3261 16 7 4.3090 2.6217 -2.4621 17 7 3.9331 3.1503 -3.5705 18 7 3.1669 2.3392 -4.2161 19 7 3.0490 1.1791 -3.4306 20 6 2.2807 -0.0295 -3.7391 21 6 2.3508 -0.4432 -5.2186 22 6 0.8543 -0.7879 -5.1100 23 6 0.7821 0.2334 -3.9625 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6886 1.8463 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 3.8515 0.5681 0.8410 30 1 3.9786 2.1764 0.0889 31 1 5.7421 -0.1335 -2.1578 32 1 5.9828 0.9383 -0.7572 33 1 8.6432 -1.5838 -0.4126 34 1 2.4821 -0.8472 -3.0472 35 1 2.5600 0.3861 -5.8944 36 1 2.9873 -1.3093 -5.4001 37 1 0.6658 -1.8139 -4.7939 38 1 0.2733 -0.5016 -5.9866 39 1 0.1539 -0.0872 -3.1315 40 1 0.5615 1.2480 -4.2944 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333002328.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:00 Heat of formation + Delta-G solvation = 85.341058 kcal Electronic energy + Delta-G solvation = -23303.712558 eV Core-core repulsion = 19963.924333 eV Total energy + Delta-G solvation = -3339.788225 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.06133 -39.81802 -39.51087 -38.00960 -34.91596 -34.47051 -32.54262 -31.16361 -28.71082 -27.25009 -26.98510 -26.72247 -24.65594 -24.24311 -23.91258 -21.83539 -20.55306 -18.96792 -18.42244 -17.90415 -17.58907 -17.08929 -16.83775 -16.48761 -16.33695 -15.77411 -15.31321 -15.04227 -14.51642 -14.36376 -14.05985 -13.98830 -13.65381 -13.53738 -13.30246 -13.00820 -12.82648 -12.72763 -12.51847 -12.47519 -12.13044 -11.99163 -11.92589 -11.90337 -11.59216 -11.48934 -11.14674 -10.97723 -10.65909 -10.57127 -9.83418 -8.23186 -6.35321 -0.10807 0.74025 1.13063 1.46256 1.48919 1.57190 2.37661 2.63800 2.90258 3.11034 3.17218 3.42385 3.47808 3.70444 3.76368 3.89087 4.09758 4.13033 4.24776 4.38656 4.49801 4.50459 4.54171 4.62330 4.65640 4.75624 4.77065 4.86969 4.89205 4.94040 4.98050 5.02472 5.04432 5.15495 5.44083 5.59366 5.76467 5.87814 6.23984 6.34728 6.78513 7.34510 7.38960 8.88250 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.014189 B = 0.006241 C = 0.005813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.916304 B = 4485.205042 C = 4815.696096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.392 6.392 3 C 0.080 3.920 4 C 0.066 3.934 5 N -0.452 5.452 6 C 0.228 3.772 7 C -0.520 4.520 8 H 0.078 0.922 9 C 0.007 3.993 10 N -0.934 5.934 11 Si 0.974 3.026 12 H -0.266 1.266 13 H -0.287 1.287 14 H -0.263 1.263 15 C 0.422 3.578 16 N -0.385 5.385 17 N -0.064 5.064 18 N -0.091 5.091 19 N -0.342 5.342 20 C 0.107 3.893 21 C -0.144 4.144 22 C -0.112 4.112 23 C -0.130 4.130 24 H 0.043 0.957 25 H 0.099 0.901 26 H 0.050 0.950 27 H 0.082 0.918 28 H 0.027 0.973 29 H 0.103 0.897 30 H 0.059 0.941 31 H -0.005 1.005 32 H -0.015 1.015 33 H 0.266 0.734 34 H 0.135 0.865 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.107 0.893 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.032 -0.685 -3.101 18.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.311 6.311 3 C 0.003 3.997 4 C -0.061 4.061 5 N -0.180 5.180 6 C 0.103 3.897 7 C -0.559 4.559 8 H 0.096 0.904 9 C -0.192 4.192 10 N -0.574 5.574 11 Si 0.798 3.202 12 H -0.190 1.190 13 H -0.213 1.213 14 H -0.188 1.188 15 C 0.056 3.944 16 N -0.243 5.243 17 N -0.060 5.060 18 N -0.078 5.078 19 N -0.140 5.140 20 C 0.006 3.994 21 C -0.182 4.182 22 C -0.150 4.150 23 C -0.168 4.168 24 H 0.061 0.939 25 H 0.117 0.883 26 H 0.069 0.931 27 H 0.100 0.900 28 H 0.045 0.955 29 H 0.121 0.879 30 H 0.077 0.923 31 H 0.013 0.987 32 H 0.003 0.997 33 H 0.075 0.925 34 H 0.153 0.847 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.125 0.875 38 H 0.118 0.882 39 H 0.111 0.889 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -17.828 -0.100 -3.885 18.247 hybrid contribution 0.964 -0.378 0.791 1.303 sum -16.864 -0.478 -3.094 17.152 Atomic orbital electron populations 1.22938 0.80019 1.03796 1.00445 1.88035 1.20817 1.26882 1.95346 1.22423 0.91834 0.85378 1.00101 1.22302 0.94577 0.98759 0.90491 1.59404 1.25548 1.32606 1.00433 1.19433 0.79150 0.95080 0.95999 1.21260 0.94111 1.12320 1.28167 0.90385 1.25916 0.94943 1.00670 0.97628 1.70103 0.99381 1.42702 1.45174 0.85355 0.76912 0.78707 0.79182 1.19035 1.21302 1.18786 1.23542 0.90064 0.90098 0.90740 1.74867 1.25632 1.09200 1.14630 1.77815 1.06585 1.21532 1.00081 1.82252 1.19086 0.90527 1.15974 1.51916 1.34063 1.15033 1.12970 1.23981 0.92595 0.82466 1.00402 1.23439 0.99985 1.02309 0.92476 1.22696 0.93699 0.99887 0.98703 1.23341 0.91531 1.01286 1.00666 0.93853 0.88305 0.93119 0.90028 0.95454 0.87863 0.92281 0.98652 0.99732 0.92501 0.84713 0.89411 0.89872 0.87493 0.88238 0.88866 0.89714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 11.01 113.37 1.25 1.72 16 2 O -0.39 -11.53 10.65 -148.98 -1.59 -13.11 16 3 C 0.08 2.35 6.06 71.98 0.44 2.79 16 4 C 0.07 2.45 5.16 86.30 0.45 2.89 16 5 N -0.45 -19.33 4.34 -711.48 -3.08 -22.41 16 6 C 0.23 12.00 4.68 85.56 0.40 12.40 16 7 C -0.52 -27.90 8.40 25.60 0.21 -27.69 16 8 H 0.08 4.03 7.61 -2.91 -0.02 4.01 16 9 C 0.01 0.40 5.46 84.65 0.46 0.86 16 10 N -0.93 -55.15 13.29 21.44 0.28 -54.86 16 11 Si 0.97 42.38 29.54 68.60 2.03 44.41 16 12 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 13 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 14 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 15 C 0.42 17.55 5.43 260.65 1.41 18.96 16 16 N -0.39 -17.18 11.90 -58.70 -0.70 -17.87 16 17 N -0.06 -2.71 13.38 37.02 0.50 -2.21 16 18 N -0.09 -3.43 13.49 37.02 0.50 -2.93 16 19 N -0.34 -12.27 3.74 -326.53 -1.22 -13.49 16 20 C 0.11 2.95 4.73 45.52 0.22 3.16 16 21 C -0.14 -3.21 7.80 31.18 0.24 -2.96 16 22 C -0.11 -1.69 8.09 31.18 0.25 -1.44 16 23 C -0.13 -2.54 7.88 31.12 0.25 -2.30 16 24 H 0.04 0.75 8.06 -2.39 -0.02 0.73 16 25 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 26 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.03 0.83 7.39 -2.38 -0.02 0.82 16 29 H 0.10 4.05 7.06 -2.39 -0.02 4.03 16 30 H 0.06 2.23 7.82 -2.39 -0.02 2.21 16 31 H 0.00 -0.27 7.97 -2.39 -0.02 -0.29 16 32 H -0.02 -0.88 8.05 -2.39 -0.02 -0.90 16 33 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 34 H 0.14 4.05 8.08 -2.39 -0.02 4.03 16 35 H 0.09 2.12 7.82 -2.39 -0.02 2.10 16 36 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.09 1.58 8.06 -2.39 -0.02 1.57 16 40 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -66.97 339.54 3.32 -63.65 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: 1.02 Total: 10.43 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: 5.58 Total: 8.40 kcal Atomic # 7 Polarization: -110.06 SS G_CDS: -3.73 Total: -113.78 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: -1.59 Total: -13.11 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -66.97 3.32 -63.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333002328.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.995 kcal (2) G-P(sol) polarization free energy of solvation -66.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds