Wall clock time and date at job start Tue Mar 31 2020 05:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 113.99930 * 2 1 4 4 C 1.53000 * 109.47202 * 179.97438 * 3 2 1 5 5 N 1.46898 * 109.46768 * 65.30203 * 4 3 2 6 6 C 1.46899 * 110.99741 * 71.35909 * 5 4 3 7 7 C 1.50698 * 109.47375 * 67.42539 * 6 5 4 8 8 H 1.07994 * 120.00309 * 4.74773 * 7 6 5 9 9 C 1.37877 * 119.99933 * 184.74999 * 7 6 5 10 10 N 1.31513 * 120.00455 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 120.00020 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.46892 * 89.99746 * 11 9 7 13 13 H 1.48499 * 109.47212 * 210.00137 * 11 9 7 14 14 H 1.48506 * 109.46918 * 329.99955 * 11 9 7 15 15 C 1.38379 * 111.00053 * 195.30652 * 5 4 3 16 16 N 1.31471 * 126.43938 * 340.46960 * 15 5 4 17 17 N 1.28418 * 110.51216 * 180.02562 * 16 15 5 18 18 N 1.28910 * 110.31391 * 359.97438 * 17 16 15 19 19 N 1.35307 * 126.43917 * 160.48481 * 15 5 4 20 20 C 1.46502 * 127.38486 * 359.97438 * 19 15 5 21 21 C 1.53001 * 109.47123 * 95.93803 * 20 19 15 22 22 C 1.52994 * 117.49787 * 243.28561 * 21 20 19 23 23 C 1.52996 * 60.00310 * 252.51309 * 22 21 20 24 24 H 1.09000 * 109.46469 * 60.00887 * 1 2 3 25 25 H 1.08999 * 109.46580 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47463 * 300.00313 * 1 2 3 27 27 H 1.09005 * 109.47326 * 59.99406 * 3 2 1 28 28 H 1.08996 * 109.46724 * 299.99871 * 3 2 1 29 29 H 1.08997 * 109.47346 * 305.30792 * 4 3 2 30 30 H 1.08998 * 109.47137 * 185.30650 * 4 3 2 31 31 H 1.09003 * 109.47011 * 187.42354 * 6 5 4 32 32 H 1.09000 * 109.47108 * 307.42000 * 6 5 4 33 33 H 0.96999 * 120.00638 * 179.97438 * 10 9 7 34 34 H 1.09000 * 109.47032 * 215.94152 * 20 19 15 35 35 H 1.09003 * 109.46638 * 335.94127 * 20 19 15 36 36 H 1.08997 * 115.55126 * 28.99952 * 21 20 19 37 37 H 1.09004 * 117.50059 * 0.02562 * 22 21 20 38 38 H 1.09000 * 117.49709 * 145.01988 * 22 21 20 39 39 H 1.08996 * 117.50009 * 252.51466 * 23 22 21 40 40 H 1.09004 * 117.51856 * 107.47666 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9784 0.5689 -1.2574 6 6 3.8137 1.4969 -2.3842 7 6 4.7698 2.6512 -2.2282 8 1 5.4859 2.6539 -1.4199 9 6 4.7302 3.7041 -3.1176 10 7 3.8585 3.7008 -4.1023 11 14 5.9150 5.1354 -2.9239 12 1 7.1559 4.8581 -3.6910 13 1 5.2813 6.3757 -3.4390 14 1 6.2495 5.3101 -1.4876 15 6 5.2880 0.1325 -1.1618 16 7 6.1806 0.5280 -0.2812 17 7 7.2984 -0.0749 -0.4717 18 7 7.2051 -0.8860 -1.4692 19 7 5.8908 -0.7812 -1.9571 20 6 5.3002 -1.5063 -3.0848 21 6 5.6376 -0.7821 -4.3897 22 6 4.4737 -0.2099 -5.2013 23 6 5.2155 -1.4521 -5.6989 24 1 -0.3632 0.5137 -0.8901 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.6885 1.8465 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 3.8505 0.5641 0.8395 30 1 3.9784 2.1761 0.0957 31 1 4.0232 0.9752 -3.3181 32 1 2.7904 1.8721 -2.3993 33 1 3.8304 4.4417 -4.7278 34 1 5.7028 -2.5188 -3.1166 35 1 4.2180 -1.5492 -2.9624 36 1 6.5737 -0.2238 -4.3891 37 1 3.4677 -0.3490 -4.8054 38 1 4.6439 0.7253 -5.7346 39 1 5.8737 -1.3341 -6.5596 40 1 4.6979 -2.4089 -5.6305 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333704278.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:04 Heat of formation + Delta-G solvation = 109.424326 kcal Electronic energy + Delta-G solvation = -23416.654216 eV Core-core repulsion = 20077.910320 eV Total energy + Delta-G solvation = -3338.743896 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.18776 -38.14288 -37.50032 -36.52404 -33.77082 -32.74646 -30.84853 -29.27057 -27.77245 -26.71734 -25.84182 -23.65952 -22.35379 -22.14260 -22.05035 -20.41563 -19.91757 -17.34962 -16.48248 -16.28072 -16.18291 -15.85296 -15.10659 -14.78057 -14.66047 -14.45620 -14.11026 -13.64655 -13.44733 -12.87744 -12.56117 -12.15609 -11.85251 -11.75921 -11.59860 -11.44267 -11.21708 -11.12250 -11.09287 -10.72006 -10.64839 -10.40780 -10.28740 -10.05510 -10.01752 -9.72666 -9.63099 -9.49955 -9.25970 -8.60673 -7.88828 -6.25168 -4.32293 1.78561 2.42810 3.11141 3.20915 3.27657 3.34887 3.99325 4.13020 4.29359 4.33385 4.74378 4.94882 5.09911 5.19959 5.23004 5.36323 5.38879 5.47364 5.50133 5.64898 5.66595 5.68601 5.79898 5.81430 5.83914 6.03494 6.16949 6.27735 6.30524 6.39747 6.46896 6.49513 6.65893 6.91452 7.18764 7.35368 7.54384 7.69558 7.76844 7.96840 8.75974 9.28403 9.36286 10.81183 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.009603 B = 0.008819 C = 0.006919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2914.953001 B = 3174.373023 C = 4046.111914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.067 3.933 4 C 0.074 3.926 5 N -0.459 5.459 6 C 0.178 3.822 7 C -0.561 4.561 8 H 0.070 0.930 9 C 0.075 3.925 10 N -0.885 5.885 11 Si 0.888 3.112 12 H -0.280 1.280 13 H -0.284 1.284 14 H -0.270 1.270 15 C 0.472 3.528 16 N -0.369 5.369 17 N -0.044 5.044 18 N -0.112 5.112 19 N -0.381 5.381 20 C 0.167 3.833 21 C -0.172 4.172 22 C -0.151 4.151 23 C -0.177 4.177 24 H 0.039 0.961 25 H 0.079 0.921 26 H 0.034 0.966 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.264 0.736 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.093 0.907 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.570 -8.201 0.528 9.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C -0.010 4.010 4 C -0.053 4.053 5 N -0.184 5.184 6 C 0.056 3.944 7 C -0.600 4.600 8 H 0.088 0.912 9 C -0.129 4.129 10 N -0.523 5.523 11 Si 0.716 3.284 12 H -0.206 1.206 13 H -0.210 1.210 14 H -0.195 1.195 15 C 0.107 3.893 16 N -0.228 5.228 17 N -0.040 5.040 18 N -0.099 5.099 19 N -0.179 5.179 20 C 0.044 3.956 21 C -0.192 4.192 22 C -0.188 4.188 23 C -0.214 4.214 24 H 0.058 0.942 25 H 0.097 0.903 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.115 0.885 35 H 0.124 0.876 36 H 0.127 0.873 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.112 0.888 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.602 -8.681 0.850 9.862 hybrid contribution 0.041 1.697 -0.559 1.787 sum -4.561 -6.984 0.291 8.347 Atomic orbital electron populations 1.22664 0.82223 1.02006 0.99589 1.87955 1.18544 1.28228 1.95324 1.22658 0.93223 0.84492 1.00617 1.22029 0.92830 1.00769 0.89678 1.59427 1.08813 1.41257 1.08868 1.20366 0.98845 0.88733 0.86499 1.21804 1.19069 1.04936 1.14150 0.91232 1.24834 0.95289 0.97990 0.94789 1.69911 1.34871 1.32206 1.15287 0.86624 0.81128 0.81711 0.78944 1.20643 1.21008 1.19467 1.23090 0.91545 0.87536 0.87166 1.74889 0.96468 1.24232 1.27246 1.77715 1.15945 1.02290 1.08056 1.82349 0.94779 1.22274 1.10541 1.51117 1.09752 1.31207 1.25803 1.21379 0.98851 0.94397 0.80957 1.22514 1.01425 1.04518 0.90718 1.23045 0.96243 0.97298 1.02237 1.22994 1.04277 0.97686 0.96478 0.94222 0.90285 0.94739 0.92989 0.91920 0.90656 0.89554 0.92575 0.92826 0.92608 0.88491 0.87564 0.87293 0.88211 0.87886 0.88812 0.88820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.50 16 2 O -0.38 -6.13 10.65 -35.23 -0.38 -6.50 16 3 C 0.07 1.08 6.08 37.16 0.23 1.31 16 4 C 0.07 1.39 4.70 -3.82 -0.02 1.38 16 5 N -0.46 -9.30 4.60 -176.23 -0.81 -10.11 16 6 C 0.18 4.02 5.01 -4.98 -0.02 4.00 16 7 C -0.56 -14.36 7.54 -34.44 -0.26 -14.62 16 8 H 0.07 1.90 6.33 -52.49 -0.33 1.56 16 9 C 0.08 1.96 5.46 -17.82 -0.10 1.86 16 10 N -0.89 -23.42 13.29 55.43 0.74 -22.69 16 11 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 14 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 15 C 0.47 10.07 5.75 -320.42 -1.84 8.23 16 16 N -0.37 -8.42 10.72 30.09 0.32 -8.10 16 17 N -0.04 -0.99 13.38 60.35 0.81 -0.18 16 18 N -0.11 -2.35 13.93 60.35 0.84 -1.51 16 19 N -0.38 -7.45 3.69 -61.86 -0.23 -7.67 16 20 C 0.17 2.57 6.49 -4.04 -0.03 2.54 16 21 C -0.17 -2.70 5.56 -90.62 -0.50 -3.20 16 22 C -0.15 -2.35 8.05 -26.74 -0.22 -2.57 16 23 C -0.18 -2.19 10.25 -26.73 -0.27 -2.46 16 24 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.06 1.08 6.44 -51.93 -0.33 0.75 16 29 H 0.07 1.38 7.86 -51.93 -0.41 0.98 16 30 H 0.09 1.75 6.83 -51.93 -0.35 1.40 16 31 H 0.06 1.26 4.33 -51.93 -0.23 1.04 16 32 H 0.05 1.27 6.35 -51.93 -0.33 0.94 16 33 H 0.26 6.74 8.31 -40.82 -0.34 6.41 16 34 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.11 1.56 7.82 -51.93 -0.41 1.16 16 36 H 0.11 1.98 8.14 -51.93 -0.42 1.56 16 37 H 0.10 1.53 7.65 -51.93 -0.40 1.14 16 38 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 39 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 332.21 15.07 5.01 5.01 Total: -1.00 -29.04 332.21 -6.37 -35.41 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -5.73 Total: 2.32 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: -1.92 Total: -2.04 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: 1.67 Total: -50.25 kcal Atomic # 8 Polarization: -6.13 SS G_CDS: -0.38 Total: -6.50 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.04 -6.37 -35.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333704278.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.833 kcal (2) G-P(sol) polarization free energy of solvation -29.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds