Wall clock time and date at job start Tue Mar 31 2020 05:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47243 * 2 1 4 4 C 1.53004 * 109.47234 * 120.00393 * 2 1 3 5 5 N 1.46496 * 109.46973 * 174.11169 * 4 2 1 6 6 C 1.46501 * 119.99774 * 276.67708 * 5 4 2 7 7 C 1.50702 * 109.47583 * 270.00496 * 6 5 4 8 8 H 1.08001 * 119.99263 * 359.97438 * 7 6 5 9 9 C 1.37867 * 119.99961 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00394 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 120.00032 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47056 * 59.99970 * 11 9 7 13 13 H 1.48494 * 109.47428 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.46993 * 300.00293 * 11 9 7 15 15 C 1.34776 * 120.00391 * 96.68720 * 5 4 2 16 16 O 1.21278 * 120.00259 * 185.40147 * 15 5 4 17 17 C 1.50705 * 119.99881 * 5.39723 * 15 5 4 18 18 C 1.52994 * 109.47079 * 174.69779 * 17 15 5 19 19 N 1.46498 * 109.47254 * 179.97438 * 18 17 15 20 20 C 1.34603 * 126.44045 * 124.99855 * 19 18 17 21 21 N 1.31071 * 106.67907 * 180.02562 * 20 19 18 22 22 N 1.28838 * 107.99186 * 359.97438 * 21 20 19 23 23 N 1.28743 * 109.39630 * 359.73635 * 22 21 20 24 24 H 1.08995 * 109.47207 * 300.00029 * 1 2 3 25 25 H 1.09007 * 109.47491 * 60.00065 * 1 2 3 26 26 H 1.09002 * 109.47103 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.46934 * 240.00163 * 2 1 3 28 28 H 1.09001 * 109.47468 * 64.70823 * 3 2 1 29 29 H 1.08995 * 109.47488 * 184.70656 * 3 2 1 30 30 H 1.09008 * 109.47345 * 304.70729 * 3 2 1 31 31 H 1.08996 * 109.47122 * 54.10569 * 4 2 1 32 32 H 1.09005 * 109.46633 * 294.10797 * 4 2 1 33 33 H 1.09000 * 109.46837 * 30.00798 * 6 5 4 34 34 H 1.09006 * 109.47115 * 150.00141 * 6 5 4 35 35 H 0.96998 * 119.99983 * 180.02562 * 10 9 7 36 36 H 1.08996 * 109.46795 * 294.69686 * 17 15 5 37 37 H 1.09000 * 109.47179 * 54.69521 * 17 15 5 38 38 H 1.09000 * 109.47385 * 300.00380 * 18 17 15 39 39 H 1.09004 * 109.46965 * 60.00137 * 18 17 15 40 40 H 1.08001 * 126.65713 * 0.03851 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.4981 -0.8452 1.1804 6 6 4.1050 -1.9449 0.4263 7 6 4.2994 -3.1307 1.3358 8 1 4.0011 -3.0709 2.3721 9 6 4.8580 -4.2916 0.8450 10 7 5.2217 -4.3642 -0.4168 11 14 5.0984 -5.7617 1.9722 12 1 3.7829 -6.1951 2.5078 13 1 5.7137 -6.8763 1.2078 14 1 5.9902 -5.3822 3.0972 15 6 4.2812 0.0523 1.8110 16 8 5.4855 0.0082 1.6742 17 6 3.6605 1.1107 2.6860 18 6 4.7646 1.9093 3.3816 19 7 4.1612 2.9386 4.2317 20 6 4.3822 3.1197 5.5471 21 7 3.6485 4.1418 5.9146 22 7 3.0107 4.5666 4.8789 23 7 3.3226 3.8455 3.8590 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.7472 1.9314 0.9291 29 1 3.1267 1.4436 -0.0843 30 1 1.6094 1.9801 -0.8449 31 1 1.5931 -1.7140 1.3035 32 1 1.7653 -0.1502 2.1361 33 1 3.4504 -2.2238 -0.3995 34 1 5.0704 -1.6264 0.0330 35 1 5.6143 -5.1811 -0.7622 36 1 3.0581 1.7812 2.0732 37 1 3.0273 0.6367 3.4360 38 1 5.3671 1.2387 3.9943 39 1 5.3977 2.3833 2.6315 40 1 5.0371 2.5362 6.1772 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334127243.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:09 Heat of formation + Delta-G solvation = 71.384875 kcal Electronic energy + Delta-G solvation = -22449.045386 eV Core-core repulsion = 19108.651976 eV Total energy + Delta-G solvation = -3340.393411 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.26385 -39.63744 -36.63690 -36.01868 -33.83438 -32.61005 -32.42385 -31.48115 -27.91003 -27.15104 -26.11821 -25.27474 -23.91569 -23.16017 -21.94181 -20.33489 -18.50223 -17.97743 -17.13096 -16.59682 -16.44477 -15.75876 -15.64019 -15.48992 -14.55115 -14.31076 -14.18090 -13.62014 -13.36202 -13.01041 -12.73868 -12.56973 -12.27122 -12.21262 -12.13693 -11.81669 -11.53854 -11.30798 -11.27175 -11.03847 -11.00366 -10.91334 -10.82168 -10.63000 -10.49966 -10.40725 -10.24116 -9.75244 -9.20415 -8.53324 -7.82087 -6.14594 -4.20447 1.14583 1.85154 2.13944 3.11342 3.23926 3.29372 3.31238 3.68594 4.11908 4.12977 4.35004 4.50622 4.71411 4.77532 4.95679 5.05130 5.12124 5.20029 5.21861 5.31235 5.38493 5.50111 5.58820 5.63674 5.68382 5.78922 5.92700 5.99458 6.02935 6.09137 6.20545 6.37540 6.47731 6.90822 7.31509 7.37675 7.80363 8.10876 8.21391 8.49085 8.71036 8.87736 9.45088 10.93360 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.016128 B = 0.004754 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.663893 B = 5888.350027 C = 7018.193534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 C -0.150 4.150 4 C 0.113 3.887 5 N -0.588 5.588 6 C 0.246 3.754 7 C -0.531 4.531 8 H 0.056 0.944 9 C 0.063 3.937 10 N -0.892 5.892 11 Si 0.898 3.102 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.276 1.276 15 C 0.516 3.484 16 O -0.545 6.545 17 C -0.168 4.168 18 C 0.129 3.871 19 N -0.303 5.303 20 C 0.160 3.840 21 N -0.312 5.312 22 N -0.083 5.083 23 N -0.092 5.092 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.079 0.921 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.034 0.966 34 H 0.046 0.954 35 H 0.265 0.735 36 H 0.114 0.886 37 H 0.096 0.904 38 H 0.123 0.877 39 H 0.116 0.884 40 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.484 10.199 5.603 12.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.136 4.136 3 C -0.207 4.207 4 C -0.012 4.012 5 N -0.318 5.318 6 C 0.127 3.873 7 C -0.570 4.570 8 H 0.074 0.926 9 C -0.139 4.139 10 N -0.531 5.531 11 Si 0.725 3.275 12 H -0.202 1.202 13 H -0.211 1.211 14 H -0.202 1.202 15 C 0.301 3.699 16 O -0.424 6.424 17 C -0.209 4.209 18 C 0.008 3.992 19 N -0.105 5.105 20 C -0.139 4.139 21 N -0.161 5.161 22 N -0.077 5.077 23 N -0.078 5.078 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.097 0.903 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.051 0.949 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.132 0.868 37 H 0.114 0.886 38 H 0.141 0.859 39 H 0.135 0.865 40 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -5.675 11.062 5.150 13.457 hybrid contribution 0.774 -1.855 0.626 2.105 sum -4.900 9.207 5.777 11.923 Atomic orbital electron populations 1.21762 0.94888 1.01886 1.01540 1.21554 0.95581 0.96490 0.99960 1.21977 1.01355 0.95960 1.01370 1.21612 0.81451 1.01343 0.96764 1.48165 1.05417 1.27643 1.50580 1.19310 0.94589 0.82328 0.91029 1.21356 1.41681 0.97335 0.96643 0.92552 1.24920 0.95119 0.98710 0.95169 1.69915 1.41652 1.28054 1.13463 0.86567 0.78440 0.81814 0.80642 1.20228 1.21109 1.20199 1.19747 0.87131 0.82027 0.80992 1.90699 1.14224 1.73657 1.63816 1.22235 0.98977 0.98775 1.00928 1.22111 0.95445 0.86932 0.94711 1.48908 1.29338 1.22873 1.09394 1.27767 1.02531 0.98776 0.84807 1.74981 1.08750 1.09909 1.22479 1.78623 1.17893 1.19129 0.92049 1.78863 1.06610 0.99210 1.23136 0.92849 0.92691 0.92409 0.90284 0.92663 0.92574 0.92691 0.89938 0.91540 0.94851 0.93636 0.92546 0.86813 0.88584 0.85886 0.86545 0.74948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.19 37.16 0.34 -1.17 16 2 C -0.12 -1.51 3.11 -90.62 -0.28 -1.79 16 3 C -0.15 -1.80 7.59 37.15 0.28 -1.52 16 4 C 0.11 1.65 4.89 -4.04 -0.02 1.63 16 5 N -0.59 -11.02 2.26 -175.05 -0.40 -11.42 16 6 C 0.25 5.95 5.22 -5.19 -0.03 5.93 16 7 C -0.53 -14.09 9.39 -34.44 -0.32 -14.42 16 8 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 9 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 10 N -0.89 -25.40 13.29 55.43 0.74 -24.67 16 11 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 12 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 13 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 14 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 15 C 0.52 9.06 6.45 -10.98 -0.07 8.99 16 16 O -0.55 -11.65 15.54 5.56 0.09 -11.57 16 17 C -0.17 -2.06 4.20 -27.88 -0.12 -2.18 16 18 C 0.13 1.34 5.79 -4.05 -0.02 1.31 16 19 N -0.30 -3.29 3.44 -62.55 -0.22 -3.51 16 20 C 0.16 1.53 12.79 -90.39 -1.16 0.38 16 21 N -0.31 -4.08 12.36 29.59 0.37 -3.72 16 22 N -0.08 -1.21 13.43 60.35 0.81 -0.40 16 23 N -0.09 -1.23 13.08 60.35 0.79 -0.44 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.54 8.14 -51.92 -0.42 0.11 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.08 1.18 8.01 -51.92 -0.42 0.76 16 28 H 0.05 0.60 6.49 -51.93 -0.34 0.27 16 29 H 0.06 0.77 6.87 -51.93 -0.36 0.41 16 30 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 31 H 0.08 1.29 8.12 -51.93 -0.42 0.86 16 32 H 0.07 0.81 6.10 -51.93 -0.32 0.50 16 33 H 0.03 0.83 7.94 -51.93 -0.41 0.42 16 34 H 0.05 1.25 7.36 -51.93 -0.38 0.87 16 35 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.11 1.33 4.79 -51.93 -0.25 1.08 16 37 H 0.10 1.07 7.37 -51.93 -0.38 0.69 16 38 H 0.12 1.08 8.08 -51.93 -0.42 0.66 16 39 H 0.12 1.23 8.04 -51.93 -0.42 0.81 16 40 H 0.23 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 334.23 15.07 5.04 5.04 Total: -1.00 -32.63 334.23 -5.07 -37.70 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -5.77 Total: -1.61 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -1.49 Total: -1.20 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: 2.09 Total: -44.16 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.09 Total: -11.57 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.63 -5.07 -37.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334127243.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.083 kcal (2) G-P(sol) polarization free energy of solvation -32.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds