Wall clock time and date at job start Tue Mar 31 2020 05:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46897 * 109.47531 * 2 1 4 4 C 1.46899 * 111.00018 * 297.29013 * 3 2 1 5 5 C 1.50705 * 109.47054 * 289.36962 * 4 3 2 6 6 H 1.08001 * 119.99912 * 355.14847 * 5 4 3 7 7 C 1.37867 * 120.00111 * 175.14185 * 5 4 3 8 8 N 1.31521 * 120.00097 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00184 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46785 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47042 * 120.00241 * 9 7 5 12 12 H 1.48498 * 109.47239 * 240.00331 * 9 7 5 13 13 C 1.38379 * 110.99749 * 61.23960 * 3 2 1 14 14 N 1.31474 * 126.43988 * 253.25461 * 13 3 2 15 15 N 1.28426 * 110.50924 * 179.81714 * 14 13 3 16 16 N 1.28908 * 110.31623 * 0.45788 * 15 14 13 17 17 N 1.35310 * 126.44193 * 73.56550 * 13 3 2 18 18 C 1.46508 * 127.37673 * 359.97438 * 17 13 3 19 19 C 1.52998 * 109.47016 * 92.00017 * 18 17 13 20 20 H 1.09004 * 110.43151 * 305.70136 * 19 18 17 21 21 C 1.54803 * 110.48942 * 183.15458 * 19 18 17 22 22 C 1.55219 * 101.99047 * 220.51594 * 21 19 18 23 23 O 1.44384 * 103.56509 * 36.87804 * 22 21 19 24 24 C 1.43735 * 106.97623 * 320.01286 * 23 22 21 25 25 H 1.08997 * 109.47229 * 186.84150 * 1 2 3 26 26 H 1.08998 * 109.47063 * 306.84223 * 1 2 3 27 27 H 1.09002 * 109.47517 * 66.83956 * 1 2 3 28 28 H 1.09003 * 109.46986 * 239.99945 * 2 1 3 29 29 H 1.08997 * 109.47301 * 120.00684 * 2 1 3 30 30 H 1.09000 * 109.46853 * 169.37258 * 4 3 2 31 31 H 1.09004 * 109.47475 * 49.37186 * 4 3 2 32 32 H 0.97001 * 119.99771 * 359.97438 * 8 7 5 33 33 H 1.08998 * 109.47027 * 211.99396 * 18 17 13 34 34 H 1.09000 * 109.47173 * 331.99969 * 18 17 13 35 35 H 1.09001 * 110.91043 * 338.64122 * 21 19 18 36 36 H 1.09008 * 110.90753 * 102.24055 * 21 19 18 37 37 H 1.09006 * 110.52481 * 278.38807 * 22 21 19 38 38 H 1.09000 * 110.78192 * 155.50111 * 22 21 19 39 39 H 1.08997 * 109.88449 * 267.08772 * 24 23 22 40 40 H 1.09006 * 110.00320 * 146.00172 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6025 2.0909 -1.2188 5 6 2.3632 1.5462 -2.4002 6 1 3.1396 0.8107 -2.2500 7 6 2.0678 1.9866 -3.6728 8 7 1.1225 2.8826 -3.8558 9 14 3.0102 1.3109 -5.1373 10 1 4.0137 0.3225 -4.6669 11 1 2.0647 0.6492 -6.0719 12 1 3.7011 2.4234 -5.8375 13 6 1.5990 2.0596 1.1325 14 7 0.6689 2.9871 1.1886 15 7 0.5216 3.4044 2.3943 16 7 1.3383 2.7930 3.1823 17 7 2.0716 1.8930 2.3894 18 6 3.1222 0.9717 2.8297 19 6 4.4750 1.6852 2.7920 20 1 4.6542 2.1092 1.8039 21 6 5.6133 0.7094 3.1774 22 6 6.5169 1.6037 4.0679 23 8 5.5740 2.4212 4.7940 24 6 4.5351 2.7851 3.8698 25 1 -0.3633 -1.0203 0.1224 26 1 -0.3633 0.6162 0.8224 27 1 -0.3634 0.4042 -0.9448 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.8113 3.1553 -1.1116 31 1 0.5338 1.9443 -1.3758 32 1 0.6329 3.2332 -3.0953 33 1 2.9134 0.6424 3.8476 34 1 3.1487 0.1072 2.1664 35 1 5.2250 -0.1370 3.7439 36 1 6.1507 0.3694 2.2920 37 1 7.1674 2.2240 3.4512 38 1 7.1063 0.9958 4.7544 39 1 4.7690 3.7442 3.4079 40 1 3.5789 2.8474 4.3893 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334507509.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:02 Heat of formation + Delta-G solvation = 77.818203 kcal Electronic energy + Delta-G solvation = -23032.775833 eV Core-core repulsion = 19692.661392 eV Total energy + Delta-G solvation = -3340.114440 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.64184 -39.66494 -37.90861 -35.46349 -33.09078 -32.32719 -31.42793 -29.75855 -29.46743 -26.90424 -26.42799 -23.84921 -23.14786 -22.56417 -22.20642 -20.97212 -20.18829 -17.20023 -16.84727 -16.72378 -16.60985 -16.17088 -15.97963 -15.17772 -14.65503 -14.31242 -13.82390 -13.69156 -13.47324 -13.29744 -12.86286 -12.69826 -12.34992 -12.01720 -11.92483 -11.77628 -11.70460 -11.58203 -11.24642 -11.08314 -11.04861 -10.76236 -10.66857 -10.51557 -10.22132 -10.18943 -9.92894 -9.84492 -8.97964 -8.53314 -8.07084 -6.51575 -4.24982 1.33279 1.99094 2.69089 3.35692 3.39493 3.51727 3.71275 3.96220 4.13944 4.30605 4.41159 4.44170 4.69836 4.89193 4.92387 4.98386 5.01795 5.23698 5.28452 5.32370 5.39230 5.44293 5.49221 5.54440 5.56148 5.65265 5.72141 5.78427 5.88238 5.94913 6.13977 6.29105 6.41505 6.63247 6.76594 6.88432 7.26033 7.40191 7.97176 8.32689 8.67309 8.90959 9.46440 10.87810 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.017047 B = 0.005271 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.161985 B = 5310.438133 C = 6146.508570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.065 3.935 3 N -0.449 5.449 4 C 0.192 3.808 5 C -0.602 4.602 6 H 0.061 0.939 7 C 0.022 3.978 8 N -0.905 5.905 9 Si 1.078 2.922 10 H -0.288 1.288 11 H -0.286 1.286 12 H -0.286 1.286 13 C 0.441 3.559 14 N -0.357 5.357 15 N -0.037 5.037 16 N -0.107 5.107 17 N -0.393 5.393 18 C 0.141 3.859 19 C -0.139 4.139 20 H 0.099 0.901 21 C -0.144 4.144 22 C 0.046 3.954 23 O -0.377 6.377 24 C 0.050 3.950 25 H 0.061 0.939 26 H 0.045 0.955 27 H 0.076 0.924 28 H 0.110 0.890 29 H 0.060 0.940 30 H 0.031 0.969 31 H 0.018 0.982 32 H 0.272 0.728 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.062 0.938 38 H 0.094 0.906 39 H 0.059 0.941 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.731 -8.286 12.695 17.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.062 4.062 3 N -0.174 5.174 4 C 0.068 3.932 5 C -0.641 4.641 6 H 0.079 0.921 7 C -0.184 4.184 8 N -0.540 5.540 9 Si 0.906 3.094 10 H -0.214 1.214 11 H -0.212 1.212 12 H -0.212 1.212 13 C 0.076 3.924 14 N -0.215 5.215 15 N -0.033 5.033 16 N -0.094 5.094 17 N -0.192 5.192 18 C 0.018 3.982 19 C -0.159 4.159 20 H 0.118 0.882 21 C -0.182 4.182 22 C -0.031 4.031 23 O -0.296 6.296 24 C -0.027 4.027 25 H 0.080 0.920 26 H 0.064 0.936 27 H 0.095 0.905 28 H 0.128 0.872 29 H 0.078 0.922 30 H 0.049 0.951 31 H 0.035 0.965 32 H 0.083 0.917 33 H 0.120 0.880 34 H 0.125 0.875 35 H 0.100 0.900 36 H 0.108 0.892 37 H 0.080 0.920 38 H 0.113 0.887 39 H 0.077 0.923 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.595 -7.221 11.919 15.871 hybrid contribution -0.181 -0.702 1.105 1.322 sum 7.413 -7.923 13.024 16.952 Atomic orbital electron populations 1.22409 0.96945 1.01784 1.03318 1.22199 0.93885 0.86838 1.03288 1.59344 1.54891 1.03361 0.99756 1.20072 0.96199 0.93820 0.83121 1.21881 1.22246 1.28405 0.91524 0.92108 1.25837 0.97002 0.95146 1.00405 1.70709 1.21064 1.26858 1.35372 0.83407 0.75362 0.75814 0.74793 1.21418 1.21249 1.21234 1.23761 0.88471 0.93850 0.86349 1.75084 1.17464 1.16256 1.12733 1.77850 1.13406 1.15856 0.96189 1.82391 1.07008 1.04373 1.15652 1.51422 1.30185 1.31326 1.06272 1.21977 0.83326 0.90256 1.02618 1.22972 0.94084 0.97063 1.01818 0.88250 1.23163 0.95835 0.98284 1.00934 1.23600 0.92264 0.92365 0.94844 1.88878 1.35746 1.70422 1.34588 1.23284 0.92437 0.96624 0.90337 0.91998 0.93552 0.90483 0.87214 0.92198 0.95109 0.96453 0.91691 0.87961 0.87463 0.89962 0.89195 0.92015 0.88736 0.92293 0.88743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.06 9.28 37.16 0.34 -2.72 16 2 C 0.06 1.05 5.77 -3.83 -0.02 1.03 16 3 N -0.45 -8.78 4.69 -176.22 -0.83 -9.61 16 4 C 0.19 4.63 3.39 -4.97 -0.02 4.61 16 5 C -0.60 -15.52 8.46 -34.44 -0.29 -15.81 16 6 H 0.06 1.53 7.59 -52.49 -0.40 1.13 16 7 C 0.02 0.58 5.46 -17.82 -0.10 0.48 16 8 N -0.90 -26.34 13.65 55.43 0.76 -25.58 16 9 Si 1.08 23.71 29.90 -169.99 -5.08 18.63 16 10 H -0.29 -5.94 7.11 56.52 0.40 -5.54 16 11 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 12 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 13 C 0.44 8.44 5.56 -320.42 -1.78 6.66 16 14 N -0.36 -7.66 11.10 30.10 0.33 -7.32 16 15 N -0.04 -0.75 13.38 60.35 0.81 0.06 16 16 N -0.11 -1.91 13.10 60.35 0.79 -1.12 16 17 N -0.39 -6.30 3.51 -61.86 -0.22 -6.52 16 18 C 0.14 1.62 5.54 -4.04 -0.02 1.60 16 19 C -0.14 -1.56 3.28 -89.09 -0.29 -1.85 16 20 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 21 C -0.14 -1.19 6.72 -24.61 -0.17 -1.35 16 22 C 0.05 0.41 7.72 38.33 0.30 0.71 16 23 O -0.38 -4.68 11.52 -35.23 -0.41 -5.08 16 24 C 0.05 0.62 7.23 37.73 0.27 0.90 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.05 0.82 6.87 -51.93 -0.36 0.46 16 27 H 0.08 1.46 6.60 -51.93 -0.34 1.12 16 28 H 0.11 1.86 7.22 -51.93 -0.38 1.48 16 29 H 0.06 0.78 6.28 -51.93 -0.33 0.46 16 30 H 0.03 0.83 7.84 -51.93 -0.41 0.43 16 31 H 0.02 0.45 5.73 -51.93 -0.30 0.15 16 32 H 0.27 8.03 7.19 -40.82 -0.29 7.74 16 33 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.11 1.10 6.19 -51.93 -0.32 0.78 16 35 H 0.08 0.57 7.87 -51.93 -0.41 0.16 16 36 H 0.09 0.66 8.14 -51.92 -0.42 0.23 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.09 1.26 6.81 -51.93 -0.35 0.91 16 LS Contribution 323.78 15.07 4.88 4.88 Total: -1.00 -30.63 323.78 -6.38 -37.00 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -5.64 Total: 0.40 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -1.78 Total: -5.74 kcal Atomic # 7 Polarization: -51.74 SS G_CDS: 1.65 Total: -50.09 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: -0.41 Total: -5.08 kcal Atomic # 14 Polarization: 23.71 SS G_CDS: -5.08 Total: 18.63 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.63 -6.38 -37.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334507509.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.823 kcal (2) G-P(sol) polarization free energy of solvation -30.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds