Wall clock time and date at job start Tue Mar 31 2020 05:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47680 * 2 1 4 4 N 1.46897 * 109.47158 * 120.00549 * 2 1 3 5 5 C 1.53005 * 109.46687 * 240.00141 * 2 1 3 6 6 N 1.46509 * 109.46813 * 185.00090 * 5 2 1 7 7 C 1.46502 * 119.99910 * 270.00056 * 6 5 2 8 8 C 1.34777 * 119.99703 * 90.00444 * 6 5 2 9 9 O 1.21589 * 120.00263 * 359.97438 * 8 6 5 10 10 N 1.34777 * 119.99754 * 179.97438 * 8 6 5 11 11 C 1.40193 * 119.99728 * 179.97438 * 10 8 6 12 12 C 1.40401 * 125.97600 * 0.02562 * 11 10 8 13 13 C 1.35244 * 107.86868 * 179.97438 * 12 11 10 14 14 N 1.34965 * 107.85999 * 359.97438 * 13 12 11 15 15 C 1.46493 * 125.97624 * 179.97438 * 14 13 12 16 16 C 1.50710 * 109.46991 * 125.02899 * 15 14 13 17 17 H 1.08002 * 119.99873 * 0.02562 * 16 15 14 18 18 C 1.37869 * 120.00276 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99950 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00357 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46987 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47510 * 120.00002 * 20 18 16 23 23 H 1.48500 * 109.47340 * 240.00050 * 20 18 16 24 24 N 1.31214 * 125.96986 * 179.97438 * 11 10 8 25 25 H 1.09002 * 109.47060 * 59.99202 * 1 2 3 26 26 H 1.08992 * 109.47732 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46760 * 299.99672 * 1 2 3 28 28 H 1.00894 * 111.00212 * 300.00057 * 4 2 1 29 29 H 1.00903 * 110.99931 * 63.95078 * 4 2 1 30 30 H 1.09004 * 109.46849 * 65.00642 * 5 2 1 31 31 H 1.08997 * 109.47397 * 305.00160 * 5 2 1 32 32 H 1.09007 * 109.47022 * 270.00103 * 7 6 5 33 33 H 1.08993 * 109.47119 * 30.00447 * 7 6 5 34 34 H 1.09001 * 109.46712 * 150.00552 * 7 6 5 35 35 H 0.96999 * 119.99686 * 0.02562 * 10 8 6 36 36 H 1.07998 * 126.06449 * 0.02562 * 12 11 10 37 37 H 1.07999 * 126.07092 * 180.02562 * 13 12 11 38 38 H 1.09003 * 109.47538 * 245.02631 * 15 14 13 39 39 H 1.08999 * 109.47417 * 5.03540 * 15 14 13 40 40 H 0.96997 * 120.00114 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6926 1.1993 5 6 2.0399 -0.7213 -1.2493 6 7 3.5000 -0.8264 -1.1907 7 6 4.3343 0.2340 -1.7613 8 6 4.0756 -1.8988 -0.6118 9 8 3.3832 -2.7788 -0.1378 10 7 5.4188 -1.9958 -0.5583 11 6 6.0176 -3.1111 0.0444 12 6 5.3424 -4.1948 0.6284 13 6 6.2715 -5.0594 1.0956 14 7 7.4894 -4.5473 0.8197 15 6 8.7768 -5.1618 1.1526 16 6 9.6081 -5.2949 -0.0974 17 1 9.2167 -4.9552 -1.0449 18 6 10.8683 -5.8502 -0.0314 19 7 11.3453 -6.2633 1.1225 20 14 11.8984 -6.0158 -1.5808 21 1 11.1391 -5.4807 -2.7395 22 1 13.1611 -5.2509 -1.4200 23 1 12.2137 -7.4479 -1.8150 24 7 7.3069 -3.3250 0.1604 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3634 -1.0275 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.6961 -0.2352 2.0385 29 1 1.7501 -1.6649 1.1907 30 1 1.7515 -0.1582 -2.1370 31 1 1.6052 -1.7198 -1.2953 32 1 4.5424 0.0093 -2.8075 33 1 3.8091 1.1865 -1.6918 34 1 5.2722 0.2951 -1.2093 35 1 5.9712 -1.2937 -0.9361 36 1 4.2713 -4.3167 0.6923 37 1 6.0739 -5.9942 1.5992 38 1 9.3026 -4.5359 1.8737 39 1 8.6079 -6.1488 1.5833 40 1 12.2320 -6.6536 1.1690 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335099133.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:31 Heat of formation + Delta-G solvation = 63.118723 kcal Electronic energy + Delta-G solvation = -21940.691081 eV Core-core repulsion = 18599.939223 eV Total energy + Delta-G solvation = -3340.751858 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.65725 -39.64300 -36.93733 -34.82975 -34.36606 -33.18179 -30.79526 -29.26967 -29.11204 -27.62826 -26.79422 -25.69736 -22.98297 -21.64036 -20.69955 -20.07219 -19.12995 -17.88280 -16.63693 -16.49155 -16.32036 -15.87472 -15.43543 -14.82377 -14.43950 -14.27630 -13.80886 -13.79530 -13.37305 -13.18275 -13.04568 -12.76088 -12.54386 -12.33061 -12.25587 -12.06124 -11.74040 -11.66991 -11.24754 -10.99074 -10.82988 -10.29134 -10.20813 -9.89549 -9.49935 -9.38844 -8.76538 -8.60648 -8.57298 -7.97211 -7.27915 -6.19541 -4.24164 2.50616 2.81965 3.25226 3.27817 3.32720 3.39578 3.57172 4.00451 4.23320 4.37988 4.45977 4.63505 4.83163 4.90140 5.05006 5.09823 5.15514 5.27706 5.47358 5.48903 5.52114 5.59895 5.67990 5.87702 5.94232 6.25562 6.49121 6.66190 6.77213 6.95061 7.07160 7.15272 7.18047 7.46482 7.64490 7.75567 7.89856 8.08333 8.16741 8.77007 8.81407 8.88736 9.41238 10.89138 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.035871 B = 0.003306 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.387839 B = 8467.606840 C = 8961.189765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.070 3.930 3 H 0.076 0.924 4 N -0.835 5.835 5 C 0.141 3.859 6 N -0.621 5.621 7 C 0.078 3.922 8 C 0.728 3.272 9 O -0.564 6.564 10 N -0.645 5.645 11 C 0.280 3.720 12 C -0.283 4.283 13 C 0.048 3.952 14 N -0.323 5.323 15 C 0.259 3.741 16 C -0.525 4.525 17 H 0.069 0.931 18 C 0.061 3.939 19 N -0.896 5.896 20 Si 0.907 3.093 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.282 1.282 24 N -0.312 5.312 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.333 0.667 29 H 0.352 0.648 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.404 0.596 36 H 0.161 0.839 37 H 0.165 0.835 38 H 0.044 0.956 39 H 0.056 0.944 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.278 13.059 -3.498 23.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.044 4.044 3 H 0.094 0.906 4 N -0.366 5.366 5 C 0.017 3.983 6 N -0.358 5.358 7 C -0.065 4.065 8 C 0.429 3.571 9 O -0.439 6.439 10 N -0.296 5.296 11 C 0.025 3.975 12 C -0.315 4.315 13 C -0.102 4.102 14 N -0.104 5.104 15 C 0.141 3.859 16 C -0.564 4.564 17 H 0.087 0.913 18 C -0.142 4.142 19 N -0.535 5.535 20 Si 0.734 3.266 21 H -0.196 1.196 22 H -0.207 1.207 23 H -0.208 1.208 24 N -0.143 5.143 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.145 0.855 29 H 0.167 0.833 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.240 0.760 36 H 0.178 0.822 37 H 0.183 0.817 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.599 12.901 -3.562 22.110 hybrid contribution -0.796 -0.079 -0.541 0.966 sum -18.395 12.821 -4.103 22.795 Atomic orbital electron populations 1.22607 0.97572 1.02258 1.02161 1.21872 0.91814 0.98560 0.92149 0.90606 1.58768 1.67302 1.07490 1.02994 1.21386 0.78754 1.01871 0.96313 1.46651 1.06192 1.20921 1.62066 1.21732 0.95492 0.90991 0.98320 1.15325 0.80963 0.82113 0.78653 1.90762 1.61794 1.40076 1.51300 1.41549 1.05238 1.22007 1.60832 1.18807 0.91033 0.88994 0.98624 1.21493 1.01037 0.96051 1.12919 1.22534 0.85406 1.00095 1.02140 1.49005 1.07213 1.13367 1.40860 1.19705 0.75744 0.92818 0.97620 1.21318 1.00160 1.40784 0.94105 0.91265 1.24947 0.97395 0.94959 0.96879 1.69930 1.18217 1.41081 1.24259 0.86284 0.79840 0.77740 0.82701 1.19573 1.20738 1.20812 1.77313 1.13326 1.02607 1.21036 0.92183 0.92367 0.92570 0.85480 0.83275 0.90304 0.89751 0.92644 0.90970 0.91409 0.76016 0.82201 0.81725 0.93842 0.92631 0.92447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.18 9.48 37.16 0.35 -0.83 16 2 C 0.07 0.57 3.67 -67.71 -0.25 0.32 16 3 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 4 N -0.83 -8.74 7.96 -4.67 -0.04 -8.78 16 5 C 0.14 1.27 5.13 -4.03 -0.02 1.25 16 6 N -0.62 -6.94 2.78 -187.34 -0.52 -7.46 16 7 C 0.08 0.63 10.20 59.85 0.61 1.24 16 8 C 0.73 11.33 7.59 -86.92 -0.66 10.67 16 9 O -0.56 -10.01 11.42 5.29 0.06 -9.95 16 10 N -0.65 -10.86 5.32 -15.51 -0.08 -10.94 16 11 C 0.28 5.89 8.11 -154.36 -1.25 4.64 16 12 C -0.28 -5.85 9.61 -39.83 -0.38 -6.23 16 13 C 0.05 1.00 11.44 -17.24 -0.20 0.80 16 14 N -0.32 -7.74 3.67 -62.56 -0.23 -7.97 16 15 C 0.26 6.74 6.26 -5.19 -0.03 6.70 16 16 C -0.53 -14.88 9.24 -34.44 -0.32 -15.20 16 17 H 0.07 2.04 7.81 -52.49 -0.41 1.63 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 19 N -0.90 -25.71 13.29 55.43 0.74 -24.98 16 20 Si 0.91 21.63 29.54 -169.99 -5.02 16.61 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 N -0.31 -7.44 12.42 31.44 0.39 -7.05 16 25 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.33 2.96 9.04 -39.29 -0.36 2.61 16 29 H 0.35 4.18 7.81 -39.29 -0.31 3.87 16 30 H 0.08 0.50 8.07 -51.93 -0.42 0.08 16 31 H 0.08 0.89 7.42 -51.93 -0.39 0.50 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.42 8.07 -51.93 -0.42 0.00 16 34 H 0.07 0.56 6.36 -51.93 -0.33 0.23 16 35 H 0.40 5.80 6.55 -40.82 -0.27 5.53 16 36 H 0.16 3.21 5.91 -52.49 -0.31 2.90 16 37 H 0.17 2.80 8.06 -52.49 -0.42 2.38 16 38 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 40 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 334.23 15.07 5.04 5.04 Total: -1.00 -33.12 334.23 -7.63 -40.75 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -5.72 Total: 9.79 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: -2.25 Total: 4.95 kcal Atomic # 7 Polarization: -67.44 SS G_CDS: 0.26 Total: -67.18 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.06 Total: -9.95 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.12 -7.63 -40.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335099133.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.869 kcal (2) G-P(sol) polarization free energy of solvation -33.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds