Wall clock time and date at job start Tue Mar 31 2020 05:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46894 * 109.47515 * 239.99762 * 2 1 3 5 5 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 6 6 N 1.46492 * 109.47631 * 174.99916 * 5 2 1 7 7 C 1.46504 * 119.99968 * 90.00264 * 6 5 2 8 8 C 1.34780 * 120.00451 * 270.00415 * 6 5 2 9 9 O 1.21585 * 119.99579 * 359.97438 * 8 6 5 10 10 N 1.34772 * 120.00351 * 179.97438 * 8 6 5 11 11 C 1.40191 * 120.00067 * 180.02562 * 10 8 6 12 12 C 1.40398 * 125.97433 * 359.71519 * 11 10 8 13 13 C 1.35240 * 107.86850 * 179.83402 * 12 11 10 14 14 N 1.34964 * 107.85827 * 0.42435 * 13 12 11 15 15 C 1.46509 * 125.97320 * 179.70944 * 14 13 12 16 16 C 1.50697 * 109.46616 * 125.00523 * 15 14 13 17 17 H 1.07999 * 120.00325 * 359.97438 * 16 15 14 18 18 C 1.37885 * 119.99668 * 180.02562 * 16 15 14 19 19 N 1.31505 * 120.00061 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99981 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47114 * 89.99761 * 20 18 16 22 22 H 1.48498 * 109.47123 * 209.99650 * 20 18 16 23 23 H 1.48508 * 109.47182 * 329.99795 * 20 18 16 24 24 N 1.31214 * 125.97170 * 180.02562 * 11 10 8 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 1.00900 * 111.00500 * 176.04192 * 4 2 1 29 29 H 1.00903 * 111.00383 * 300.00193 * 4 2 1 30 30 H 1.09001 * 109.47317 * 295.00638 * 5 2 1 31 31 H 1.09006 * 109.47194 * 55.00274 * 5 2 1 32 32 H 1.08992 * 109.47369 * 90.00084 * 7 6 5 33 33 H 1.09004 * 109.46887 * 210.00569 * 7 6 5 34 34 H 1.09008 * 109.46836 * 330.00037 * 7 6 5 35 35 H 0.97003 * 119.99915 * 0.02562 * 10 8 6 36 36 H 1.07999 * 126.06496 * 359.97438 * 12 11 10 37 37 H 1.08005 * 126.07240 * 180.16066 * 13 12 11 38 38 H 1.08998 * 109.46701 * 245.00140 * 15 14 13 39 39 H 1.08990 * 109.47199 * 5.00221 * 15 14 13 40 40 H 0.96996 * 120.00307 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1993 5 6 2.0400 -0.7212 1.2493 6 7 3.5000 -0.8263 1.1907 7 6 4.3343 0.2341 1.7614 8 6 4.0758 -1.8986 0.6117 9 8 3.3834 -2.7789 0.1384 10 7 5.4189 -1.9951 0.5573 11 6 6.0178 -3.1103 -0.0454 12 6 5.3428 -4.1968 -0.6241 13 6 6.2718 -5.0583 -1.0971 14 7 7.4896 -4.5457 -0.8220 15 6 8.7773 -5.1602 -1.1548 16 6 9.6063 -4.1878 -1.9536 17 1 9.2133 -3.2101 -2.1900 18 6 10.8663 -4.5468 -2.3834 19 7 11.3447 -5.7376 -2.0960 20 14 11.8938 -3.3418 -3.3742 21 1 12.7144 -2.5161 -2.4521 22 1 12.7862 -4.0917 -4.2941 23 1 10.9975 -2.4594 -4.1638 24 7 7.3072 -3.3236 -0.1622 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 3.0262 -0.6500 -1.2558 29 1 1.6962 -1.6480 -1.2227 30 1 1.7516 -0.1583 2.1370 31 1 1.6054 -1.7198 1.2952 32 1 4.5424 0.0094 2.8074 33 1 5.2722 0.2953 1.2093 34 1 3.8090 1.1867 1.6919 35 1 5.9713 -1.2930 0.9352 36 1 4.2716 -4.3214 -0.6832 37 1 6.0743 -5.9928 -1.6013 38 1 9.3046 -5.4187 -0.2366 39 1 8.6082 -6.0622 -1.7428 40 1 12.2312 -5.9900 -2.3980 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335099134.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:34 Heat of formation + Delta-G solvation = 61.135367 kcal Electronic energy + Delta-G solvation = -22018.475375 eV Core-core repulsion = 18677.637512 eV Total energy + Delta-G solvation = -3340.837863 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.92937 -39.89661 -37.02312 -35.05856 -34.38536 -33.24933 -30.88744 -29.35569 -29.25387 -27.74237 -26.92197 -25.81330 -23.06153 -21.69750 -20.76186 -20.19671 -19.33127 -18.02384 -16.80562 -16.56905 -16.41628 -16.04675 -15.65705 -14.92461 -14.56788 -14.38435 -14.06813 -13.88691 -13.69630 -13.36729 -12.91987 -12.76485 -12.36051 -12.25254 -12.23483 -12.05018 -11.97299 -11.75274 -11.18268 -11.03775 -10.89483 -10.44836 -10.25859 -10.10979 -9.70536 -9.50353 -9.34909 -8.63548 -8.47582 -8.11322 -7.42857 -6.24304 -4.29345 2.26611 2.60634 3.05045 3.23770 3.29542 3.33392 3.39611 3.79526 4.08431 4.33001 4.47286 4.63973 4.71540 4.94147 4.98548 5.10872 5.14782 5.17024 5.33270 5.46964 5.53107 5.57521 5.79794 5.80887 5.93363 6.08336 6.28595 6.52672 6.57794 6.79783 6.94521 7.07542 7.15972 7.44821 7.46622 7.68395 7.76465 7.91990 8.05925 8.48323 8.64947 8.80634 9.36294 10.84442 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.029103 B = 0.003392 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.861451 B = 8253.213750 C = 8495.812459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.070 3.930 3 H 0.076 0.924 4 N -0.837 5.837 5 C 0.096 3.904 6 N -0.633 5.633 7 C 0.074 3.926 8 C 0.711 3.289 9 O -0.566 6.566 10 N -0.642 5.642 11 C 0.273 3.727 12 C -0.285 4.285 13 C 0.051 3.949 14 N -0.320 5.320 15 C 0.259 3.741 16 C -0.528 4.528 17 H 0.069 0.931 18 C 0.062 3.938 19 N -0.896 5.896 20 Si 0.908 3.092 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.272 1.272 24 N -0.307 5.307 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.339 0.661 29 H 0.349 0.651 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.406 0.594 36 H 0.161 0.839 37 H 0.167 0.833 38 H 0.044 0.956 39 H 0.057 0.943 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.493 10.730 7.711 21.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.043 4.043 3 H 0.094 0.906 4 N -0.367 5.367 5 C -0.029 4.029 6 N -0.371 5.371 7 C -0.069 4.069 8 C 0.412 3.588 9 O -0.442 6.442 10 N -0.293 5.293 11 C 0.019 3.981 12 C -0.316 4.316 13 C -0.099 4.099 14 N -0.101 5.101 15 C 0.141 3.859 16 C -0.567 4.567 17 H 0.087 0.913 18 C -0.141 4.141 19 N -0.534 5.534 20 Si 0.735 3.265 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.197 1.197 24 N -0.138 5.138 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.152 0.848 29 H 0.163 0.837 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.243 0.757 36 H 0.178 0.822 37 H 0.185 0.815 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.966 10.901 7.149 21.397 hybrid contribution 0.832 0.057 0.298 0.885 sum -16.135 10.958 7.447 20.878 Atomic orbital electron populations 1.21730 0.93959 1.02293 1.02005 1.21842 0.95649 0.98183 0.88671 0.90596 1.59033 1.16466 1.22409 1.38819 1.22319 0.78135 1.02918 0.99498 1.47001 1.06872 1.21068 1.62172 1.21807 0.95423 0.90922 0.98745 1.15609 0.81398 0.82324 0.79433 1.90851 1.61797 1.39691 1.51813 1.41553 1.05023 1.22128 1.60565 1.18799 0.91183 0.88997 0.99136 1.21488 1.01069 0.96046 1.13040 1.22559 0.85319 1.00348 1.01662 1.49060 1.07343 1.13100 1.40639 1.19737 0.75605 0.93351 0.97199 1.21261 1.00276 1.01095 1.34028 0.91302 1.24946 0.97367 0.95655 0.96120 1.69912 1.18253 1.19293 1.45937 0.86327 0.79804 0.80649 0.79716 1.20358 1.20981 1.19690 1.77319 1.13174 1.02347 1.20988 0.92472 0.91642 0.92336 0.84815 0.83728 0.90306 0.89482 0.92264 0.91183 0.90501 0.75716 0.82193 0.81536 0.93774 0.92525 0.92325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.49 37.16 0.35 -0.68 16 2 C 0.07 0.61 3.70 -67.72 -0.25 0.36 16 3 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 4 N -0.84 -9.70 8.54 -4.67 -0.04 -9.74 16 5 C 0.10 0.83 5.17 -4.05 -0.02 0.81 16 6 N -0.63 -6.36 2.59 -187.35 -0.48 -6.84 16 7 C 0.07 0.51 10.20 59.85 0.61 1.13 16 8 C 0.71 10.09 6.75 -86.92 -0.59 9.50 16 9 O -0.57 -9.39 11.53 5.29 0.06 -9.32 16 10 N -0.64 -9.91 5.32 -15.51 -0.08 -9.99 16 11 C 0.27 5.45 8.11 -154.36 -1.25 4.20 16 12 C -0.28 -5.62 9.61 -39.84 -0.38 -6.00 16 13 C 0.05 1.02 11.44 -17.24 -0.20 0.83 16 14 N -0.32 -7.43 3.67 -62.56 -0.23 -7.66 16 15 C 0.26 6.58 6.26 -5.19 -0.03 6.55 16 16 C -0.53 -14.70 9.24 -34.44 -0.32 -15.02 16 17 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 19 N -0.90 -25.36 13.28 55.43 0.74 -24.63 16 20 Si 0.91 21.36 29.54 -169.99 -5.02 16.34 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 24 N -0.31 -7.05 12.42 31.44 0.39 -6.66 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.34 4.45 7.23 -39.29 -0.28 4.16 16 29 H 0.35 4.40 8.09 -39.29 -0.32 4.08 16 30 H 0.08 0.49 8.07 -51.93 -0.42 0.07 16 31 H 0.09 0.89 7.42 -51.93 -0.39 0.51 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.48 6.36 -51.93 -0.33 0.15 16 34 H 0.08 0.38 8.07 -51.92 -0.42 -0.04 16 35 H 0.41 5.26 6.55 -40.82 -0.27 5.00 16 36 H 0.16 3.06 5.91 -52.49 -0.31 2.75 16 37 H 0.17 2.73 8.06 -52.48 -0.42 2.30 16 38 H 0.04 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 40 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 332.43 15.07 5.01 5.01 Total: -1.00 -31.65 332.43 -7.49 -39.15 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -5.66 Total: 11.08 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: -2.17 Total: 3.27 kcal Atomic # 7 Polarization: -65.81 SS G_CDS: 0.29 Total: -65.52 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.06 Total: -9.32 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.65 -7.49 -39.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335099134.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.281 kcal (2) G-P(sol) polarization free energy of solvation -31.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds