Wall clock time and date at job start Tue Mar 31 2020 05:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46907 * 2 1 4 4 C 1.50698 * 109.47418 * 239.99882 * 2 1 3 5 5 H 1.07999 * 120.00021 * 239.99699 * 4 2 1 6 6 C 1.37879 * 120.00211 * 59.99716 * 4 2 1 7 7 N 1.31516 * 119.99854 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00141 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47029 * 90.00205 * 8 6 4 10 10 H 1.48497 * 109.47315 * 209.99965 * 8 6 4 11 11 H 1.48497 * 109.47274 * 330.00346 * 8 6 4 12 12 N 1.46894 * 109.47051 * 119.99442 * 2 1 3 13 13 C 1.46903 * 111.00197 * 176.04960 * 12 2 1 14 14 C 1.38383 * 111.00226 * 300.00548 * 12 2 1 15 15 N 1.31478 * 126.43663 * 307.01530 * 14 12 2 16 16 N 1.28422 * 110.50725 * 180.02562 * 15 14 12 17 17 N 1.28911 * 110.31309 * 0.02562 * 16 15 14 18 18 N 1.35307 * 126.44030 * 127.04424 * 14 12 2 19 19 C 1.46502 * 127.38330 * 0.23502 * 18 14 12 20 20 C 1.53000 * 109.47317 * 264.61479 * 19 18 14 21 21 H 1.09000 * 110.45438 * 52.39744 * 20 19 18 22 22 C 1.54506 * 110.50839 * 174.99707 * 20 19 18 23 23 C 1.54479 * 104.06316 * 118.64860 * 22 20 19 24 24 O 1.44425 * 104.80276 * 23.97391 * 23 22 20 25 25 C 1.44426 * 105.27737 * 319.49159 * 24 23 22 26 26 H 1.09004 * 109.46907 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47302 * 300.00318 * 1 2 3 28 28 H 1.09001 * 109.46876 * 60.00458 * 1 2 3 29 29 H 0.96993 * 119.99961 * 179.97438 * 7 6 4 30 30 H 1.08999 * 109.47321 * 177.45075 * 13 12 2 31 31 H 1.08996 * 109.46947 * 297.45475 * 13 12 2 32 32 H 1.09000 * 109.47071 * 57.45084 * 13 12 2 33 33 H 1.09009 * 109.46694 * 24.61673 * 19 18 14 34 34 H 1.08999 * 109.47250 * 144.60881 * 19 18 14 35 35 H 1.09004 * 110.51286 * 237.28936 * 22 20 19 36 36 H 1.08999 * 110.51688 * 359.97438 * 22 20 19 37 37 H 1.08995 * 110.37935 * 142.80696 * 23 22 20 38 38 H 1.09006 * 110.36852 * 265.14909 * 23 22 20 39 39 H 1.08997 * 110.37547 * 281.68339 * 25 24 23 40 40 H 1.09000 * 110.37455 * 159.34217 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3227 -1.1196 -4.0079 9 1 1.3451 -2.1617 -4.4123 10 1 2.4874 -0.1404 -5.1120 11 1 3.6310 -1.7566 -3.7118 12 7 2.0196 -0.6924 1.1995 13 6 3.4851 -0.7944 1.1872 14 6 1.5759 -0.0648 2.3502 15 7 1.7092 1.2093 2.6459 16 7 1.1858 1.4626 3.7909 17 7 0.6886 0.3891 4.3031 18 7 0.9236 -0.6473 3.3828 19 6 0.5488 -2.0572 3.5163 20 6 -0.8939 -2.2484 3.0439 21 1 -1.0269 -1.8289 2.0467 22 6 -1.2736 -3.7460 3.0563 23 6 -2.4446 -3.8281 4.0605 24 8 -3.0116 -2.4999 4.0754 25 6 -1.8803 -1.6027 4.0421 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 0.7096 1.1616 -3.4844 30 1 3.8239 -1.2705 2.1073 31 1 3.8005 -1.3914 0.3316 32 1 3.9181 0.2032 1.1135 33 1 1.2146 -2.6693 2.9077 34 1 0.6321 -2.3581 4.5606 35 1 -1.5968 -4.0663 2.0658 36 1 -0.4334 -4.3503 3.3985 37 1 -3.1849 -4.5529 3.7218 38 1 -2.0767 -4.0948 5.0513 39 1 -1.4259 -1.5282 5.0300 40 1 -2.1871 -0.6181 3.6893 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335322766.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:32 Heat of formation + Delta-G solvation = 84.074317 kcal Electronic energy + Delta-G solvation = -23266.405689 eV Core-core repulsion = 19926.562534 eV Total energy + Delta-G solvation = -3339.843155 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.54415 -39.57188 -37.44971 -35.36446 -33.16071 -32.23922 -30.82787 -29.62085 -29.36933 -26.79111 -25.76617 -24.61732 -23.15474 -22.69720 -21.98550 -20.64228 -19.85838 -17.38629 -16.60901 -16.58055 -16.01121 -15.74565 -15.43449 -15.23792 -14.79984 -14.37823 -13.87891 -13.63887 -13.20335 -12.96372 -12.74607 -12.55179 -12.07841 -11.95768 -11.88033 -11.54864 -11.32186 -11.18670 -11.11175 -10.88930 -10.82164 -10.56502 -10.47512 -10.41999 -10.26502 -10.04368 -9.91673 -9.52192 -9.26819 -8.65701 -8.04635 -6.19076 -4.27063 1.38526 2.08652 2.75397 3.20819 3.28270 3.29675 3.81423 4.09770 4.30731 4.35086 4.53076 4.58101 4.77684 4.90678 5.08885 5.10592 5.13785 5.27517 5.31307 5.49402 5.56869 5.64072 5.73450 5.79456 5.83543 5.89015 6.04188 6.06683 6.30432 6.44202 6.57513 6.64375 6.76785 6.82640 7.12858 7.35127 7.56494 7.71289 8.00713 8.19657 8.75433 8.94707 9.38622 10.87837 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.016949 B = 0.005741 C = 0.004875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.641556 B = 4876.210041 C = 5741.934923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.223 3.777 3 H 0.028 0.972 4 C -0.515 4.515 5 H 0.068 0.932 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.903 3.097 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.273 1.273 12 N -0.474 5.474 13 C 0.046 3.954 14 C 0.445 3.555 15 N -0.354 5.354 16 N -0.043 5.043 17 N -0.105 5.105 18 N -0.377 5.377 19 C 0.142 3.858 20 C -0.140 4.140 21 H 0.101 0.899 22 C -0.144 4.144 23 C 0.044 3.956 24 O -0.375 6.375 25 C 0.054 3.946 26 H 0.035 0.965 27 H 0.000 1.000 28 H 0.096 0.904 29 H 0.265 0.735 30 H 0.046 0.954 31 H 0.097 0.903 32 H 0.041 0.959 33 H 0.114 0.886 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.504 -10.230 10.504 14.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.119 3.881 3 H 0.046 0.954 4 C -0.554 4.554 5 H 0.086 0.914 6 C -0.139 4.139 7 N -0.523 5.523 8 Si 0.730 3.270 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.203 5.203 13 C -0.101 4.101 14 C 0.080 3.920 15 N -0.211 5.211 16 N -0.039 5.039 17 N -0.092 5.092 18 N -0.175 5.175 19 C 0.020 3.980 20 C -0.160 4.160 21 H 0.120 0.880 22 C -0.182 4.182 23 C -0.033 4.033 24 O -0.293 6.293 25 C -0.023 4.023 26 H 0.054 0.946 27 H 0.019 0.981 28 H 0.114 0.886 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.116 0.884 32 H 0.059 0.941 33 H 0.132 0.868 34 H 0.116 0.884 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.110 0.890 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.166 -9.399 11.184 14.769 hybrid contribution 0.717 -0.654 -1.328 1.645 sum -1.449 -10.053 9.856 14.153 Atomic orbital electron populations 1.21870 0.97346 0.99475 1.00431 1.19538 0.92515 0.93318 0.82704 0.95440 1.20979 1.32421 1.12915 0.89067 0.91387 1.24915 0.94894 0.94931 0.99112 1.69886 1.35980 1.22456 1.23995 0.86421 0.79198 0.79225 0.82121 1.20578 1.21133 1.19750 1.59654 1.12108 1.49990 0.98549 1.22290 0.83976 1.01820 1.02023 1.23607 0.91234 0.87164 0.90024 1.75035 1.23696 1.13098 1.09262 1.77868 1.05722 1.17753 1.02604 1.82415 1.22840 0.90799 1.13110 1.51595 1.40965 1.10521 1.14446 1.21965 0.96569 0.75844 1.03656 1.22978 0.93749 0.97002 1.02259 0.88032 1.22911 0.98987 0.94808 1.01497 1.23431 0.95582 0.86036 0.98269 1.89144 1.29046 1.15824 1.95331 1.23481 0.86289 0.94335 0.98164 0.94625 0.98065 0.88595 0.92527 0.93499 0.88427 0.94077 0.86776 0.88428 0.89623 0.89944 0.89007 0.92276 0.91598 0.89170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 8.84 37.16 0.33 -2.81 16 2 C 0.22 5.29 1.95 -68.87 -0.13 5.16 16 3 H 0.03 0.76 8.00 -51.93 -0.42 0.34 16 4 C -0.52 -12.79 7.95 -34.44 -0.27 -13.07 16 5 H 0.07 1.62 6.40 -52.49 -0.34 1.29 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 7 N -0.89 -24.03 11.32 55.43 0.63 -23.40 16 8 Si 0.90 19.86 29.54 -169.99 -5.02 14.84 16 9 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 10 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 12 N -0.47 -9.37 4.61 -176.43 -0.81 -10.18 16 13 C 0.05 0.81 9.13 60.07 0.55 1.36 16 14 C 0.45 8.64 5.16 -320.41 -1.65 6.99 16 15 N -0.35 -7.61 11.93 30.10 0.36 -7.26 16 16 N -0.04 -0.88 13.38 60.35 0.81 -0.07 16 17 N -0.11 -1.88 13.93 60.35 0.84 -1.04 16 18 N -0.38 -6.20 3.58 -61.85 -0.22 -6.42 16 19 C 0.14 1.71 5.67 -4.04 -0.02 1.69 16 20 C -0.14 -1.71 3.35 -89.05 -0.30 -2.01 16 21 H 0.10 1.54 7.75 -51.93 -0.40 1.14 16 22 C -0.14 -1.34 6.74 -25.16 -0.17 -1.51 16 23 C 0.04 0.41 7.63 37.93 0.29 0.70 16 24 O -0.37 -5.00 11.65 -35.23 -0.41 -5.41 16 25 C 0.05 0.70 7.08 37.93 0.27 0.97 16 26 H 0.03 0.79 7.75 -51.93 -0.40 0.39 16 27 H 0.00 0.01 7.22 -51.93 -0.38 -0.37 16 28 H 0.10 2.50 6.07 -51.93 -0.32 2.19 16 29 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 30 H 0.05 0.69 8.10 -51.93 -0.42 0.27 16 31 H 0.10 1.69 6.33 -51.93 -0.33 1.36 16 32 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.11 1.27 8.10 -51.92 -0.42 0.85 16 34 H 0.10 0.93 7.96 -51.93 -0.41 0.51 16 35 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.08 0.58 7.73 -51.93 -0.40 0.18 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.79 7.74 -51.93 -0.40 0.39 16 40 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 328.24 15.07 4.95 4.95 Total: -1.00 -29.06 328.24 -5.98 -35.03 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -5.88 Total: -0.07 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -1.21 Total: -0.97 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: 1.60 Total: -48.38 kcal Atomic # 8 Polarization: -5.00 SS G_CDS: -0.41 Total: -5.41 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.06 -5.98 -35.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335322766.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.109 kcal (2) G-P(sol) polarization free energy of solvation -29.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds