Wall clock time and date at job start Tue Mar 31 2020 05:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46907 * 2 1 4 4 C 1.50698 * 109.47418 * 239.99882 * 2 1 3 5 5 H 1.07999 * 120.00021 * 239.99699 * 4 2 1 6 6 C 1.37879 * 120.00211 * 59.99716 * 4 2 1 7 7 N 1.31516 * 119.99854 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00141 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47029 * 90.00205 * 8 6 4 10 10 H 1.48497 * 109.47315 * 209.99965 * 8 6 4 11 11 H 1.48497 * 109.47274 * 330.00346 * 8 6 4 12 12 N 1.46894 * 109.47051 * 119.99442 * 2 1 3 13 13 C 1.46903 * 111.00197 * 176.04960 * 12 2 1 14 14 C 1.38383 * 111.00226 * 300.00548 * 12 2 1 15 15 N 1.31478 * 126.43663 * 307.01530 * 14 12 2 16 16 N 1.28422 * 110.50725 * 180.02562 * 15 14 12 17 17 N 1.28911 * 110.31309 * 0.02562 * 16 15 14 18 18 N 1.35307 * 126.44030 * 127.04424 * 14 12 2 19 19 C 1.46502 * 127.38330 * 0.23502 * 18 14 12 20 20 C 1.53000 * 109.47317 * 264.61479 * 19 18 14 21 21 H 1.09000 * 110.45438 * 52.39744 * 20 19 18 22 22 C 1.54506 * 110.50839 * 174.99707 * 20 19 18 23 23 C 1.54479 * 104.06316 * 118.64860 * 22 20 19 24 24 O 1.44425 * 104.80276 * 23.97391 * 23 22 20 25 25 C 1.44426 * 105.27737 * 319.49159 * 24 23 22 26 26 H 1.09004 * 109.46907 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47302 * 300.00318 * 1 2 3 28 28 H 1.09001 * 109.46876 * 60.00458 * 1 2 3 29 29 H 0.96993 * 119.99961 * 179.97438 * 7 6 4 30 30 H 1.08999 * 109.47321 * 177.45075 * 13 12 2 31 31 H 1.08996 * 109.46947 * 297.45475 * 13 12 2 32 32 H 1.09000 * 109.47071 * 57.45084 * 13 12 2 33 33 H 1.09009 * 109.46694 * 24.61673 * 19 18 14 34 34 H 1.08999 * 109.47250 * 144.60881 * 19 18 14 35 35 H 1.09004 * 110.51286 * 237.28936 * 22 20 19 36 36 H 1.08999 * 110.51688 * 359.97438 * 22 20 19 37 37 H 1.08995 * 110.37935 * 142.80696 * 23 22 20 38 38 H 1.09006 * 110.36852 * 265.14909 * 23 22 20 39 39 H 1.08997 * 110.37547 * 281.68339 * 25 24 23 40 40 H 1.09000 * 110.37455 * 159.34217 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3227 -1.1196 -4.0079 9 1 1.3451 -2.1617 -4.4123 10 1 2.4874 -0.1404 -5.1120 11 1 3.6310 -1.7566 -3.7118 12 7 2.0196 -0.6924 1.1995 13 6 3.4851 -0.7944 1.1872 14 6 1.5759 -0.0648 2.3502 15 7 1.7092 1.2093 2.6459 16 7 1.1858 1.4626 3.7909 17 7 0.6886 0.3891 4.3031 18 7 0.9236 -0.6473 3.3828 19 6 0.5488 -2.0572 3.5163 20 6 -0.8939 -2.2484 3.0439 21 1 -1.0269 -1.8289 2.0467 22 6 -1.2736 -3.7460 3.0563 23 6 -2.4446 -3.8281 4.0605 24 8 -3.0116 -2.4999 4.0754 25 6 -1.8803 -1.6027 4.0421 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 0.7096 1.1616 -3.4844 30 1 3.8239 -1.2705 2.1073 31 1 3.8005 -1.3914 0.3316 32 1 3.9181 0.2032 1.1135 33 1 1.2146 -2.6693 2.9077 34 1 0.6321 -2.3581 4.5606 35 1 -1.5968 -4.0663 2.0658 36 1 -0.4334 -4.3503 3.3985 37 1 -3.1849 -4.5529 3.7218 38 1 -2.0767 -4.0948 5.0513 39 1 -1.4259 -1.5282 5.0300 40 1 -2.1871 -0.6181 3.6893 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335322766.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:31 Heat of formation + Delta-G solvation = 64.453127 kcal Electronic energy + Delta-G solvation = -23267.256528 eV Core-core repulsion = 19926.562534 eV Total energy + Delta-G solvation = -3340.693994 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.04280 -40.50038 -39.10621 -36.58463 -35.01477 -33.37135 -32.42917 -31.28653 -30.39737 -28.10786 -27.39726 -26.27683 -24.23857 -24.18166 -23.34837 -21.72292 -21.41961 -18.74035 -18.26212 -17.96014 -17.28848 -17.21942 -16.56150 -16.35328 -16.31115 -15.72199 -15.44555 -15.04412 -14.53041 -14.25470 -13.97939 -13.88658 -13.71271 -13.32250 -13.11008 -12.95309 -12.82732 -12.66082 -12.36624 -12.33851 -12.25072 -12.14558 -12.10485 -12.00895 -11.69188 -11.29902 -11.18427 -11.04566 -10.81142 -10.58916 -9.77753 -8.14793 -6.29154 -0.08525 0.75242 1.19318 1.48552 1.49669 1.59486 2.40237 2.72944 2.93803 3.17000 3.26193 3.52045 3.57388 3.69767 3.86536 4.09154 4.19488 4.25238 4.31209 4.38299 4.41817 4.56411 4.61581 4.63533 4.70718 4.75722 4.82631 4.83765 4.88910 5.00927 5.04196 5.12236 5.16644 5.29396 5.58222 5.65429 5.78690 5.83187 6.07242 6.36707 6.81026 7.39865 7.43597 8.92452 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.016949 B = 0.005741 C = 0.004875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.641556 B = 4876.210041 C = 5741.934923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.233 3.767 3 H -0.017 1.017 4 C -0.519 4.519 5 H 0.082 0.918 6 C 0.014 3.986 7 N -0.922 5.922 8 Si 0.968 3.032 9 H -0.275 1.275 10 H -0.292 1.292 11 H -0.258 1.258 12 N -0.462 5.462 13 C 0.045 3.955 14 C 0.434 3.566 15 N -0.387 5.387 16 N -0.065 5.065 17 N -0.091 5.091 18 N -0.358 5.358 19 C 0.132 3.868 20 C -0.137 4.137 21 H 0.066 0.934 22 C -0.135 4.135 23 C 0.038 3.962 24 O -0.402 6.402 25 C 0.056 3.944 26 H 0.044 0.956 27 H -0.005 1.005 28 H 0.068 0.932 29 H 0.263 0.737 30 H 0.081 0.919 31 H 0.102 0.898 32 H 0.023 0.977 33 H 0.132 0.868 34 H 0.135 0.865 35 H 0.082 0.918 36 H 0.115 0.885 37 H 0.106 0.894 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.704 -13.361 11.396 17.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.127 3.873 3 H 0.001 0.999 4 C -0.557 4.557 5 H 0.100 0.900 6 C -0.185 4.185 7 N -0.561 5.561 8 Si 0.793 3.207 9 H -0.201 1.201 10 H -0.218 1.218 11 H -0.182 1.182 12 N -0.190 5.190 13 C -0.101 4.101 14 C 0.067 3.933 15 N -0.244 5.244 16 N -0.061 5.061 17 N -0.078 5.078 18 N -0.157 5.157 19 C 0.012 3.988 20 C -0.157 4.157 21 H 0.085 0.915 22 C -0.173 4.173 23 C -0.038 4.038 24 O -0.321 6.321 25 C -0.020 4.020 26 H 0.063 0.937 27 H 0.014 0.986 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.100 0.900 31 H 0.120 0.880 32 H 0.042 0.958 33 H 0.150 0.850 34 H 0.153 0.847 35 H 0.100 0.900 36 H 0.133 0.867 37 H 0.124 0.876 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.359 -12.566 12.106 17.501 hybrid contribution 0.401 0.279 -1.508 1.585 sum -0.957 -12.287 10.598 16.255 Atomic orbital electron populations 1.21631 0.97552 0.99389 0.98739 1.19186 0.92218 0.91324 0.84523 0.99924 1.21293 1.32064 1.13002 0.89352 0.90049 1.25762 0.95059 0.95510 1.02209 1.70043 1.37451 1.24135 1.24443 0.85395 0.79206 0.77912 0.78173 1.20111 1.21778 1.18225 1.59583 1.13411 1.48637 0.97405 1.22389 0.82436 1.01269 1.04056 1.23469 0.92230 0.87009 0.90544 1.74935 1.24777 1.14713 1.10001 1.77853 1.06894 1.18675 1.02653 1.82308 1.21550 0.90771 1.13169 1.51821 1.39219 1.11693 1.12983 1.22521 0.96550 0.73313 1.06421 1.22883 0.93700 0.99080 1.00033 0.91540 1.22918 1.00078 0.92662 1.01614 1.23711 0.96005 0.84439 0.99631 1.89119 1.29796 1.17662 1.95517 1.23393 0.86537 0.93326 0.98791 0.93697 0.98643 0.91328 0.92776 0.90024 0.87989 0.95792 0.85020 0.84731 0.89969 0.86660 0.87625 0.89980 0.90341 0.92072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.57 8.84 71.98 0.64 -4.94 16 2 C 0.23 11.24 1.95 44.17 0.09 11.33 16 3 H -0.02 -0.96 8.00 -2.38 -0.02 -0.98 16 4 C -0.52 -25.58 7.95 25.60 0.20 -25.38 16 5 H 0.08 3.73 6.40 -2.91 -0.02 3.71 16 6 C 0.01 0.72 5.30 84.65 0.45 1.17 16 7 N -0.92 -51.26 11.32 21.45 0.24 -51.02 16 8 Si 0.97 40.29 29.54 68.60 2.03 42.31 16 9 H -0.28 -11.21 7.11 99.48 0.71 -10.51 16 10 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 12 N -0.46 -17.93 4.61 -712.10 -3.28 -21.21 16 13 C 0.05 1.52 9.13 127.69 1.17 2.69 16 14 C 0.43 16.63 5.16 260.65 1.35 17.98 16 15 N -0.39 -16.91 11.93 -58.69 -0.70 -17.61 16 16 N -0.06 -2.65 13.38 37.02 0.50 -2.15 16 17 N -0.09 -3.18 13.93 37.02 0.52 -2.67 16 18 N -0.36 -11.25 3.58 -349.61 -1.25 -12.50 16 19 C 0.13 2.76 5.67 86.38 0.49 3.25 16 20 C -0.14 -3.10 3.35 -9.78 -0.03 -3.13 16 21 H 0.07 2.00 7.75 -2.39 -0.02 1.98 16 22 C -0.13 -2.06 6.74 31.61 0.21 -1.85 16 23 C 0.04 0.60 7.63 72.48 0.55 1.16 16 24 O -0.40 -10.17 11.65 -148.98 -1.74 -11.91 16 25 C 0.06 1.40 7.08 72.48 0.51 1.92 16 26 H 0.04 2.03 7.75 -2.38 -0.02 2.01 16 27 H -0.01 -0.27 7.22 -2.39 -0.02 -0.28 16 28 H 0.07 3.72 6.07 -2.39 -0.01 3.71 16 29 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 30 H 0.08 2.17 8.10 -2.39 -0.02 2.15 16 31 H 0.10 3.32 6.33 -2.39 -0.02 3.31 16 32 H 0.02 0.87 8.14 -2.39 -0.02 0.86 16 33 H 0.13 2.39 8.10 -2.38 -0.02 2.37 16 34 H 0.13 1.90 7.96 -2.39 -0.02 1.88 16 35 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 36 H 0.12 1.04 7.73 -2.39 -0.02 1.02 16 37 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 39 H 0.08 1.73 7.74 -2.39 -0.02 1.71 16 40 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -64.96 328.24 2.97 -61.99 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: 1.04 Total: 10.58 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: 5.62 Total: 4.19 kcal Atomic # 7 Polarization: -103.19 SS G_CDS: -3.98 Total: -107.16 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: -1.74 Total: -11.91 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 2.03 Total: 42.31 kcal Total: -64.96 2.97 -61.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335322766.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.439 kcal (2) G-P(sol) polarization free energy of solvation -64.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds