Wall clock time and date at job start Tue Mar 31 2020 05:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47245 * 2 1 4 4 C 1.50700 * 109.47115 * 120.00319 * 2 1 3 5 5 H 1.07999 * 119.99762 * 120.00333 * 4 2 1 6 6 C 1.37874 * 120.00039 * 299.99843 * 4 2 1 7 7 N 1.31515 * 120.00068 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99997 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47333 * 90.00453 * 8 6 4 10 10 H 1.48504 * 109.47111 * 210.00040 * 8 6 4 11 11 H 1.48494 * 109.47270 * 329.99813 * 8 6 4 12 12 N 1.46906 * 109.47201 * 240.00211 * 2 1 3 13 13 C 1.46894 * 110.99810 * 306.04470 * 12 2 1 14 14 C 1.38377 * 110.99776 * 70.00017 * 12 2 1 15 15 N 1.31472 * 126.44037 * 293.39919 * 14 12 2 16 16 N 1.28421 * 110.51100 * 179.97438 * 15 14 12 17 17 N 1.28910 * 110.31757 * 0.02562 * 16 15 14 18 18 N 1.35311 * 126.44028 * 113.08660 * 14 12 2 19 19 C 1.46500 * 127.38031 * 0.02562 * 18 14 12 20 20 C 1.53000 * 109.47352 * 92.65006 * 19 18 14 21 21 H 1.09003 * 110.43579 * 303.07517 * 20 19 18 22 22 C 1.54809 * 110.48824 * 180.53594 * 20 19 18 23 23 C 1.55224 * 101.98881 * 220.51648 * 22 20 19 24 24 O 1.44383 * 103.56351 * 36.87990 * 23 22 20 25 25 C 1.43747 * 106.97554 * 320.00977 * 24 23 22 26 26 H 1.09004 * 109.47300 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47345 * 299.99727 * 1 2 3 28 28 H 1.09002 * 109.47526 * 60.00115 * 1 2 3 29 29 H 0.96998 * 120.00248 * 180.02562 * 7 6 4 30 30 H 1.09003 * 109.47127 * 66.41283 * 13 12 2 31 31 H 1.09005 * 109.47107 * 186.40758 * 13 12 2 32 32 H 1.08998 * 109.47373 * 306.40659 * 13 12 2 33 33 H 1.09003 * 109.47079 * 212.65269 * 19 18 14 34 34 H 1.09000 * 109.46962 * 332.65045 * 19 18 14 35 35 H 1.09004 * 110.90595 * 338.64234 * 22 20 19 36 36 H 1.09001 * 110.90849 * 102.24114 * 22 20 19 37 37 H 1.08997 * 110.52140 * 278.38461 * 23 22 20 38 38 H 1.09002 * 110.78161 * 155.49770 * 23 22 20 39 39 H 1.08994 * 109.87973 * 267.09108 * 25 24 23 40 40 H 1.09002 * 109.99827 * 146.00611 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5885 1.1312 6 6 1.6992 -0.2395 2.4827 7 7 0.9427 0.8295 2.6034 8 14 2.3225 -1.1197 4.0078 9 1 3.6304 -0.5442 4.4118 10 1 1.3444 -0.9492 5.1122 11 1 2.4879 -2.5655 3.7121 12 7 2.0196 -0.6925 -1.1995 13 6 1.4343 -2.0354 -1.3079 14 6 1.7684 0.0515 -2.3389 15 7 0.5873 0.3306 -2.8446 16 7 0.7094 1.0419 -3.9068 17 7 1.9544 1.2659 -4.1550 18 7 2.6917 0.6335 -3.1386 19 6 4.1480 0.6072 -2.9812 20 6 4.7263 -0.5633 -3.7789 21 1 4.2737 -1.5021 -3.4593 22 6 6.2649 -0.6212 -3.6179 23 6 6.7267 -0.9728 -5.0575 24 8 5.8078 -0.2402 -5.8963 25 6 4.5093 -0.3465 -5.2890 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 0.7087 1.1611 3.4844 30 1 0.3618 -1.9512 -1.4836 31 1 1.8978 -2.5678 -2.1384 32 1 1.6089 -2.5837 -0.3821 33 1 4.5702 1.5421 -3.3499 34 1 4.3973 0.4868 -1.9269 35 1 6.6602 0.3463 -3.3082 36 1 6.5532 -1.4012 -2.9132 37 1 6.6385 -2.0444 -5.2360 38 1 7.7506 -0.6396 -5.2274 39 1 3.9707 -1.1946 -5.7116 40 1 3.9443 0.5709 -5.4543 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335322767.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:34 Heat of formation + Delta-G solvation = 88.213343 kcal Electronic energy + Delta-G solvation = -23077.405749 eV Core-core repulsion = 19737.742076 eV Total energy + Delta-G solvation = -3339.663673 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.55260 -39.63101 -37.62308 -35.40338 -33.10595 -32.29181 -30.87154 -29.64383 -28.84067 -26.74895 -25.69387 -25.34515 -23.17792 -22.43478 -22.00019 -20.81812 -19.72755 -17.04778 -16.74879 -16.63752 -16.34241 -15.91480 -15.64699 -15.12034 -14.75463 -14.18388 -13.84157 -13.46366 -13.28111 -13.06770 -12.68725 -12.54562 -12.03213 -11.95676 -11.67081 -11.65159 -11.44516 -11.20117 -11.06889 -11.01085 -10.92808 -10.81873 -10.52695 -10.33134 -10.18327 -10.06122 -9.82475 -9.50036 -9.10544 -8.58262 -8.08892 -6.19619 -4.27265 1.38450 2.08823 2.73721 3.19919 3.27574 3.29233 3.73780 4.09666 4.24249 4.32998 4.41442 4.54854 4.77019 4.94551 4.98457 5.08889 5.12707 5.26327 5.39395 5.47096 5.52955 5.58851 5.68874 5.71726 5.81275 5.92447 5.95447 6.09254 6.31550 6.46660 6.64906 6.66144 6.82896 6.99135 7.20062 7.39855 7.56372 7.71656 8.07841 8.20582 8.75611 8.93950 9.38448 10.87062 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.019251 B = 0.005228 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.122255 B = 5354.073989 C = 6332.667825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.223 3.777 3 H 0.038 0.962 4 C -0.510 4.510 5 H 0.067 0.933 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.903 3.097 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.273 1.273 12 N -0.471 5.471 13 C 0.042 3.958 14 C 0.439 3.561 15 N -0.351 5.351 16 N -0.046 5.046 17 N -0.104 5.104 18 N -0.375 5.375 19 C 0.139 3.861 20 C -0.136 4.136 21 H 0.094 0.906 22 C -0.144 4.144 23 C 0.046 3.954 24 O -0.377 6.377 25 C 0.048 3.952 26 H 0.035 0.965 27 H 0.090 0.910 28 H 0.036 0.964 29 H 0.264 0.736 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.119 0.881 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.060 0.940 38 H 0.094 0.906 39 H 0.056 0.944 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.718 -4.264 -9.684 14.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.119 3.881 3 H 0.056 0.944 4 C -0.549 4.549 5 H 0.086 0.914 6 C -0.139 4.139 7 N -0.525 5.525 8 Si 0.731 3.269 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.198 1.198 12 N -0.199 5.199 13 C -0.106 4.106 14 C 0.074 3.926 15 N -0.208 5.208 16 N -0.042 5.042 17 N -0.091 5.091 18 N -0.173 5.173 19 C 0.017 3.983 20 C -0.156 4.156 21 H 0.113 0.887 22 C -0.182 4.182 23 C -0.031 4.031 24 O -0.296 6.296 25 C -0.029 4.029 26 H 0.054 0.946 27 H 0.109 0.891 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.114 0.886 33 H 0.120 0.880 34 H 0.137 0.863 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.112 0.888 39 H 0.075 0.925 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 9.338 -3.481 -10.629 14.570 hybrid contribution 0.196 -0.722 1.650 1.812 sum 9.534 -4.203 -8.979 13.754 Atomic orbital electron populations 1.22488 0.98503 1.00438 1.02214 1.19510 0.91708 0.93931 0.82956 0.94411 1.20920 1.31932 1.13135 0.88885 0.91449 1.24915 0.94859 0.95046 0.99095 1.69897 1.35958 1.22676 1.23939 0.86417 0.78516 0.79903 0.82097 1.20610 1.21171 1.19751 1.59826 1.59056 1.02895 0.98131 1.22321 0.98179 0.87363 1.02714 1.23698 0.83876 0.92557 0.92479 1.75085 1.21183 1.17427 1.07067 1.77869 1.09748 1.08303 1.08297 1.82412 0.99006 1.18610 1.09062 1.51591 1.08980 1.37610 1.19072 1.22003 0.73109 0.99715 1.03515 1.22934 0.96976 0.99632 0.96056 0.88730 1.23166 0.93048 1.03765 0.98228 1.23604 0.94523 0.96411 0.88555 1.88885 1.18094 1.73907 1.48719 1.23319 0.85857 1.02888 0.90800 0.94596 0.89148 0.94555 0.92592 0.93525 0.93441 0.88598 0.88031 0.86333 0.89739 0.89203 0.92176 0.88750 0.92534 0.88593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.20 8.16 37.15 0.30 -3.90 16 2 C 0.22 5.22 2.28 -68.86 -0.16 5.07 16 3 H 0.04 1.00 8.05 -51.93 -0.42 0.58 16 4 C -0.51 -12.58 7.88 -34.44 -0.27 -12.85 16 5 H 0.07 1.61 7.14 -52.49 -0.37 1.24 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -23.88 11.32 55.43 0.63 -23.25 16 8 Si 0.90 19.76 29.54 -169.99 -5.02 14.74 16 9 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 10 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 12 N -0.47 -9.24 4.72 -176.43 -0.83 -10.08 16 13 C 0.04 0.73 8.58 60.06 0.52 1.25 16 14 C 0.44 8.48 6.33 -320.42 -2.03 6.45 16 15 N -0.35 -7.31 9.85 30.10 0.30 -7.01 16 16 N -0.05 -0.93 13.38 60.35 0.81 -0.12 16 17 N -0.10 -1.89 12.86 60.35 0.78 -1.12 16 18 N -0.37 -6.28 3.46 -61.86 -0.21 -6.49 16 19 C 0.14 1.77 5.64 -4.04 -0.02 1.75 16 20 C -0.14 -1.49 3.30 -89.09 -0.29 -1.78 16 21 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 22 C -0.14 -1.21 6.73 -24.60 -0.17 -1.38 16 23 C 0.05 0.40 7.72 38.34 0.30 0.70 16 24 O -0.38 -4.62 11.52 -35.23 -0.41 -5.03 16 25 C 0.05 0.58 7.20 37.73 0.27 0.85 16 26 H 0.03 0.81 6.47 -51.93 -0.34 0.47 16 27 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 28 H 0.04 0.85 5.99 -51.93 -0.31 0.54 16 29 H 0.26 6.81 8.31 -40.82 -0.34 6.48 16 30 H 0.05 0.86 6.46 -51.93 -0.34 0.52 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.10 1.71 6.71 -51.93 -0.35 1.36 16 33 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.12 1.53 8.14 -51.93 -0.42 1.10 16 35 H 0.08 0.65 7.87 -51.93 -0.41 0.24 16 36 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.10 1.29 6.55 -51.93 -0.34 0.95 16 LS Contribution 321.84 15.07 4.85 4.85 Total: -1.00 -28.42 321.84 -6.47 -34.89 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -5.71 Total: 0.94 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -1.65 Total: -2.31 kcal Atomic # 7 Polarization: -49.53 SS G_CDS: 1.46 Total: -48.07 kcal Atomic # 8 Polarization: -4.62 SS G_CDS: -0.41 Total: -5.03 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.42 -6.47 -34.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335322767.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.105 kcal (2) G-P(sol) polarization free energy of solvation -28.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds