Wall clock time and date at job start Tue Mar 31 2020 05:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47245 * 2 1 4 4 C 1.50700 * 109.47115 * 120.00319 * 2 1 3 5 5 H 1.07999 * 119.99762 * 120.00333 * 4 2 1 6 6 C 1.37874 * 120.00039 * 299.99843 * 4 2 1 7 7 N 1.31515 * 120.00068 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99997 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47333 * 90.00453 * 8 6 4 10 10 H 1.48504 * 109.47111 * 210.00040 * 8 6 4 11 11 H 1.48494 * 109.47270 * 329.99813 * 8 6 4 12 12 N 1.46906 * 109.47201 * 240.00211 * 2 1 3 13 13 C 1.46894 * 110.99810 * 306.04470 * 12 2 1 14 14 C 1.38377 * 110.99776 * 70.00017 * 12 2 1 15 15 N 1.31472 * 126.44037 * 293.39919 * 14 12 2 16 16 N 1.28421 * 110.51100 * 179.97438 * 15 14 12 17 17 N 1.28910 * 110.31757 * 0.02562 * 16 15 14 18 18 N 1.35311 * 126.44028 * 113.08660 * 14 12 2 19 19 C 1.46500 * 127.38031 * 0.02562 * 18 14 12 20 20 C 1.53000 * 109.47352 * 92.65006 * 19 18 14 21 21 H 1.09003 * 110.43579 * 303.07517 * 20 19 18 22 22 C 1.54809 * 110.48824 * 180.53594 * 20 19 18 23 23 C 1.55224 * 101.98881 * 220.51648 * 22 20 19 24 24 O 1.44383 * 103.56351 * 36.87990 * 23 22 20 25 25 C 1.43747 * 106.97554 * 320.00977 * 24 23 22 26 26 H 1.09004 * 109.47300 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47345 * 299.99727 * 1 2 3 28 28 H 1.09002 * 109.47526 * 60.00115 * 1 2 3 29 29 H 0.96998 * 120.00248 * 180.02562 * 7 6 4 30 30 H 1.09003 * 109.47127 * 66.41283 * 13 12 2 31 31 H 1.09005 * 109.47107 * 186.40758 * 13 12 2 32 32 H 1.08998 * 109.47373 * 306.40659 * 13 12 2 33 33 H 1.09003 * 109.47079 * 212.65269 * 19 18 14 34 34 H 1.09000 * 109.46962 * 332.65045 * 19 18 14 35 35 H 1.09004 * 110.90595 * 338.64234 * 22 20 19 36 36 H 1.09001 * 110.90849 * 102.24114 * 22 20 19 37 37 H 1.08997 * 110.52140 * 278.38461 * 23 22 20 38 38 H 1.09002 * 110.78161 * 155.49770 * 23 22 20 39 39 H 1.08994 * 109.87973 * 267.09108 * 25 24 23 40 40 H 1.09002 * 109.99827 * 146.00611 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5885 1.1312 6 6 1.6992 -0.2395 2.4827 7 7 0.9427 0.8295 2.6034 8 14 2.3225 -1.1197 4.0078 9 1 3.6304 -0.5442 4.4118 10 1 1.3444 -0.9492 5.1122 11 1 2.4879 -2.5655 3.7121 12 7 2.0196 -0.6925 -1.1995 13 6 1.4343 -2.0354 -1.3079 14 6 1.7684 0.0515 -2.3389 15 7 0.5873 0.3306 -2.8446 16 7 0.7094 1.0419 -3.9068 17 7 1.9544 1.2659 -4.1550 18 7 2.6917 0.6335 -3.1386 19 6 4.1480 0.6072 -2.9812 20 6 4.7263 -0.5633 -3.7789 21 1 4.2737 -1.5021 -3.4593 22 6 6.2649 -0.6212 -3.6179 23 6 6.7267 -0.9728 -5.0575 24 8 5.8078 -0.2402 -5.8963 25 6 4.5093 -0.3465 -5.2890 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 0.7087 1.1611 3.4844 30 1 0.3618 -1.9512 -1.4836 31 1 1.8978 -2.5678 -2.1384 32 1 1.6089 -2.5837 -0.3821 33 1 4.5702 1.5421 -3.3499 34 1 4.3973 0.4868 -1.9269 35 1 6.6602 0.3463 -3.3082 36 1 6.5532 -1.4012 -2.9132 37 1 6.6385 -2.0444 -5.2360 38 1 7.7506 -0.6396 -5.2274 39 1 3.9707 -1.1946 -5.7116 40 1 3.9443 0.5709 -5.4543 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335322767.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:34 Heat of formation + Delta-G solvation = 70.468170 kcal Electronic energy + Delta-G solvation = -23078.175237 eV Core-core repulsion = 19737.742076 eV Total energy + Delta-G solvation = -3340.433162 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.04996 -40.49590 -39.27844 -36.61818 -34.95005 -33.36244 -32.47100 -30.72316 -30.39215 -27.92424 -27.33625 -27.12737 -24.33250 -23.79369 -23.29244 -21.91595 -21.23973 -18.47347 -18.22654 -17.88387 -17.49974 -17.40455 -16.93806 -16.48211 -15.98292 -15.57653 -15.37397 -14.79224 -14.51725 -14.34068 -14.10339 -13.73909 -13.50682 -13.24922 -13.08569 -12.99972 -12.76629 -12.70842 -12.56590 -12.43578 -12.22580 -12.06744 -12.05316 -11.96293 -11.78620 -11.34837 -11.07316 -10.99295 -10.70046 -10.52321 -9.74215 -8.13357 -6.27055 -0.09178 0.73578 1.18067 1.48980 1.50895 1.60312 2.41493 2.75212 2.94306 3.18038 3.24520 3.41443 3.54289 3.66853 3.87067 4.14333 4.20849 4.23062 4.30575 4.41654 4.45139 4.60533 4.61971 4.64518 4.75303 4.78411 4.86163 4.95268 4.97918 5.03144 5.08303 5.10563 5.12380 5.42546 5.58085 5.67912 5.84798 5.86778 6.15703 6.38570 6.82475 7.41670 7.43024 8.93405 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.019251 B = 0.005228 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.122255 B = 5354.073989 C = 6332.667825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.233 3.767 3 H 0.002 0.998 4 C -0.513 4.513 5 H 0.077 0.923 6 C 0.015 3.985 7 N -0.921 5.921 8 Si 0.967 3.033 9 H -0.277 1.277 10 H -0.291 1.291 11 H -0.260 1.260 12 N -0.461 5.461 13 C 0.042 3.958 14 C 0.427 3.573 15 N -0.372 5.372 16 N -0.065 5.065 17 N -0.095 5.095 18 N -0.359 5.359 19 C 0.130 3.870 20 C -0.128 4.128 21 H 0.091 0.909 22 C -0.135 4.135 23 C 0.041 3.959 24 O -0.398 6.398 25 C 0.051 3.949 26 H 0.042 0.958 27 H 0.063 0.937 28 H 0.032 0.968 29 H 0.262 0.738 30 H 0.036 0.964 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.069 0.931 38 H 0.114 0.886 39 H 0.052 0.948 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.784 -5.681 -9.651 16.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.127 3.873 3 H 0.020 0.980 4 C -0.551 4.551 5 H 0.095 0.905 6 C -0.184 4.184 7 N -0.560 5.560 8 Si 0.792 3.208 9 H -0.202 1.202 10 H -0.218 1.218 11 H -0.184 1.184 12 N -0.188 5.188 13 C -0.104 4.104 14 C 0.061 3.939 15 N -0.230 5.230 16 N -0.061 5.061 17 N -0.082 5.082 18 N -0.157 5.157 19 C 0.010 3.990 20 C -0.148 4.148 21 H 0.110 0.890 22 C -0.173 4.173 23 C -0.035 4.035 24 O -0.317 6.317 25 C -0.026 4.026 26 H 0.061 0.939 27 H 0.082 0.918 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.095 0.905 32 H 0.114 0.886 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.112 0.888 36 H 0.126 0.874 37 H 0.087 0.913 38 H 0.132 0.868 39 H 0.070 0.930 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 11.435 -4.915 -10.622 16.362 hybrid contribution -0.376 -0.251 1.543 1.608 sum 11.058 -5.166 -9.079 15.212 Atomic orbital electron populations 1.22314 0.98974 1.00305 1.00653 1.19174 0.91116 0.92414 0.84564 0.98005 1.21193 1.31523 1.13154 0.89250 0.90483 1.25718 0.95018 0.95617 1.02058 1.70045 1.37357 1.24255 1.24365 0.85411 0.77673 0.79375 0.78303 1.20249 1.21760 1.18398 1.59720 1.58721 1.03301 0.97107 1.22388 0.97771 0.86354 1.03932 1.23602 0.84173 0.93373 0.92777 1.74977 1.22468 1.18003 1.07514 1.77855 1.10530 1.09142 1.08583 1.82344 0.98659 1.17948 1.09245 1.51817 1.10149 1.35899 1.17857 1.22428 0.70779 1.01610 1.04228 1.22878 0.98823 0.98355 0.94784 0.89016 1.23191 0.90619 1.05028 0.98500 1.23849 0.94805 0.96781 0.88099 1.88868 1.18423 1.74642 1.49782 1.23206 0.86019 1.01817 0.91577 0.93903 0.91841 0.94867 0.92839 0.94564 0.90473 0.88575 0.86340 0.86073 0.88756 0.87447 0.91268 0.86773 0.92967 0.90270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.86 8.16 71.98 0.59 -7.27 16 2 C 0.23 10.95 2.28 44.17 0.10 11.05 16 3 H 0.00 0.11 8.05 -2.39 -0.02 0.09 16 4 C -0.51 -24.91 7.88 25.60 0.20 -24.71 16 5 H 0.08 3.54 7.14 -2.91 -0.02 3.52 16 6 C 0.02 0.78 5.30 84.65 0.45 1.22 16 7 N -0.92 -50.25 11.32 21.45 0.24 -50.01 16 8 Si 0.97 39.82 29.54 68.60 2.03 41.84 16 9 H -0.28 -11.18 7.11 99.48 0.71 -10.48 16 10 H -0.29 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 12 N -0.46 -17.69 4.72 -712.10 -3.36 -21.05 16 13 C 0.04 1.43 8.58 127.69 1.10 2.52 16 14 C 0.43 16.26 6.33 260.65 1.65 17.91 16 15 N -0.37 -15.55 9.85 -58.70 -0.58 -16.12 16 16 N -0.07 -2.62 13.38 37.02 0.50 -2.13 16 17 N -0.10 -3.41 12.86 37.02 0.48 -2.93 16 18 N -0.36 -11.72 3.46 -349.63 -1.21 -12.93 16 19 C 0.13 3.09 5.64 86.38 0.49 3.57 16 20 C -0.13 -2.53 3.30 -9.81 -0.03 -2.56 16 21 H 0.09 1.89 8.14 -2.39 -0.02 1.88 16 22 C -0.14 -1.85 6.73 31.97 0.22 -1.63 16 23 C 0.04 0.59 7.72 72.75 0.56 1.16 16 24 O -0.40 -9.04 11.52 -148.98 -1.72 -10.76 16 25 C 0.05 1.16 7.20 72.35 0.52 1.68 16 26 H 0.04 1.94 6.47 -2.39 -0.02 1.93 16 27 H 0.06 3.41 6.07 -2.39 -0.01 3.40 16 28 H 0.03 1.58 5.99 -2.39 -0.01 1.57 16 29 H 0.26 13.74 8.31 -92.71 -0.77 12.97 16 30 H 0.04 1.29 6.46 -2.39 -0.02 1.28 16 31 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 32 H 0.10 3.23 6.71 -2.39 -0.02 3.22 16 33 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 35 H 0.09 1.13 7.87 -2.38 -0.02 1.11 16 36 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.08 2.06 6.55 -2.39 -0.02 2.05 16 Total: -1.00 -60.94 321.84 3.25 -57.68 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: 1.04 Total: 13.46 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: 5.84 Total: 2.95 kcal Atomic # 7 Polarization: -101.24 SS G_CDS: -3.94 Total: -105.18 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: -1.72 Total: -10.76 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 2.03 Total: 41.84 kcal Total: -60.94 3.25 -57.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335322767.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.152 kcal (2) G-P(sol) polarization free energy of solvation -60.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds