Wall clock time and date at job start Tue Mar 31 2020 05:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46811 * 2 1 4 4 C 1.50699 * 109.47695 * 120.00172 * 2 1 3 5 5 H 1.07996 * 120.00136 * 119.99442 * 4 2 1 6 6 C 1.37878 * 119.99471 * 300.00184 * 4 2 1 7 7 N 1.31513 * 120.00717 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99565 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47381 * 59.99891 * 8 6 4 10 10 H 1.48503 * 109.47035 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.47013 * 299.99602 * 8 6 4 12 12 N 1.46904 * 109.47107 * 240.00607 * 2 1 3 13 13 C 1.46901 * 110.99301 * 306.04174 * 12 2 1 14 14 C 1.38378 * 111.00383 * 69.99364 * 12 2 1 15 15 N 1.31476 * 126.43560 * 345.21700 * 14 12 2 16 16 N 1.28427 * 110.50408 * 179.81490 * 15 14 12 17 17 N 1.28910 * 110.31667 * 0.46258 * 16 15 14 18 18 N 1.35309 * 126.43834 * 165.53046 * 14 12 2 19 19 C 1.46497 * 127.38409 * 359.97438 * 18 14 12 20 20 C 1.53001 * 109.46915 * 274.18036 * 19 18 14 21 21 H 1.09005 * 110.46074 * 51.84004 * 20 19 18 22 22 C 1.54508 * 110.51141 * 174.44734 * 20 19 18 23 23 C 1.54479 * 104.06220 * 118.64139 * 22 20 19 24 24 O 1.44421 * 104.80532 * 23.98184 * 23 22 20 25 25 C 1.44427 * 105.27250 * 319.48211 * 24 23 22 26 26 H 1.08997 * 109.47095 * 299.99549 * 1 2 3 27 27 H 1.08994 * 109.47611 * 60.00209 * 1 2 3 28 28 H 1.09005 * 109.46811 * 180.02562 * 1 2 3 29 29 H 0.96991 * 120.00323 * 180.02562 * 7 6 4 30 30 H 1.08996 * 109.47462 * 66.02238 * 13 12 2 31 31 H 1.09006 * 109.46901 * 186.02244 * 13 12 2 32 32 H 1.08997 * 109.47620 * 306.01790 * 13 12 2 33 33 H 1.08998 * 109.47026 * 34.17383 * 19 18 14 34 34 H 1.09000 * 109.47191 * 154.17663 * 19 18 14 35 35 H 1.08999 * 110.51187 * 237.29090 * 22 20 19 36 36 H 1.09000 * 110.50943 * 359.97438 * 22 20 19 37 37 H 1.09005 * 110.36902 * 142.81331 * 23 22 20 38 38 H 1.08997 * 110.37317 * 265.14260 * 23 22 20 39 39 H 1.08989 * 110.37705 * 281.68356 * 25 24 23 40 40 H 1.09010 * 110.36871 * 159.34064 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6994 -0.2393 2.4827 7 7 0.9436 0.8302 2.6035 8 14 2.3216 -1.1203 4.0078 9 1 3.8065 -1.1209 4.0080 10 1 1.8272 -0.4199 5.2204 11 1 1.8260 -2.5203 4.0076 12 7 2.0197 -0.6924 -1.1995 13 6 1.4343 -2.0354 -1.3078 14 6 1.7683 0.0515 -2.3390 15 7 0.9509 1.0765 -2.4378 16 7 0.9546 1.5411 -3.6350 17 7 1.7524 0.8543 -4.3791 18 7 2.3131 -0.1430 -3.5621 19 6 3.2806 -1.1718 -3.9516 20 6 4.6975 -0.6803 -3.6487 21 1 4.7693 -0.3372 -2.6165 22 6 5.7282 -1.7988 -3.9203 23 6 6.6314 -1.2156 -5.0295 24 8 6.4997 0.2165 -4.8978 25 6 5.1000 0.4464 -4.6260 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 0.7096 1.1617 3.4844 30 1 0.3608 -1.9513 -1.4766 31 1 1.8929 -2.5653 -2.1427 32 1 1.6150 -2.5861 -0.3847 33 1 3.0852 -2.0854 -3.3901 34 1 3.1863 -1.3739 -5.0185 35 1 6.3111 -2.0072 -3.0232 36 1 5.2282 -2.7021 -4.2700 37 1 7.6671 -1.5174 -4.8732 38 1 6.2849 -1.5400 -6.0107 39 1 4.5185 0.3770 -5.5452 40 1 4.9592 1.4215 -4.1595 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335322768.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:37 Heat of formation + Delta-G solvation = 91.042344 kcal Electronic energy + Delta-G solvation = -23111.392310 eV Core-core repulsion = 19771.851311 eV Total energy + Delta-G solvation = -3339.540999 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.50529 -39.63156 -37.73132 -35.44833 -33.05121 -32.25456 -30.83933 -29.61019 -28.85928 -26.99770 -25.54932 -25.30418 -23.19791 -22.56477 -21.95858 -20.73434 -19.75016 -17.39753 -16.53803 -16.43058 -16.02583 -15.93050 -15.50156 -15.37416 -14.79771 -14.53589 -13.85837 -13.45283 -13.28779 -13.04834 -12.76540 -12.64261 -12.09659 -11.94318 -11.69654 -11.64498 -11.49260 -11.23211 -11.02699 -10.97832 -10.86302 -10.75880 -10.46498 -10.19796 -10.07339 -10.04553 -9.96770 -9.69915 -9.06487 -8.52264 -7.96948 -6.13977 -4.22467 1.45022 2.09690 2.82833 3.23732 3.29925 3.30441 3.75571 4.07819 4.20423 4.36345 4.45636 4.54595 4.70010 4.84867 5.00037 5.08681 5.11228 5.17824 5.25041 5.42743 5.49252 5.57784 5.67703 5.75960 5.77519 5.79636 5.86474 6.01647 6.19708 6.34496 6.58615 6.68124 6.87922 7.06622 7.17177 7.37207 7.59217 7.78362 8.13070 8.23680 8.78437 9.04954 9.42817 10.92246 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.018058 B = 0.005339 C = 0.004525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.170185 B = 5242.702434 C = 6185.702797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.225 3.775 3 H 0.053 0.947 4 C -0.517 4.517 5 H 0.065 0.935 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.453 5.453 13 C 0.034 3.966 14 C 0.441 3.559 15 N -0.348 5.348 16 N -0.040 5.040 17 N -0.111 5.111 18 N -0.396 5.396 19 C 0.140 3.860 20 C -0.140 4.140 21 H 0.102 0.898 22 C -0.144 4.144 23 C 0.044 3.956 24 O -0.374 6.374 25 C 0.054 3.946 26 H 0.093 0.907 27 H 0.042 0.958 28 H 0.025 0.975 29 H 0.265 0.735 30 H 0.041 0.959 31 H 0.050 0.950 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.876 -8.345 -12.325 16.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.121 3.879 3 H 0.070 0.930 4 C -0.556 4.556 5 H 0.083 0.917 6 C -0.138 4.138 7 N -0.520 5.520 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.177 5.177 13 C -0.113 4.113 14 C 0.076 3.924 15 N -0.206 5.206 16 N -0.036 5.036 17 N -0.098 5.098 18 N -0.196 5.196 19 C 0.018 3.982 20 C -0.160 4.160 21 H 0.121 0.879 22 C -0.183 4.183 23 C -0.033 4.033 24 O -0.293 6.293 25 C -0.023 4.023 26 H 0.111 0.889 27 H 0.061 0.939 28 H 0.044 0.956 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.121 0.879 33 H 0.124 0.876 34 H 0.119 0.881 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.110 0.890 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.832 -7.100 -12.824 16.172 hybrid contribution 0.007 -1.280 1.208 1.760 sum 6.839 -8.380 -11.615 15.872 Atomic orbital electron populations 1.22483 0.98560 0.99440 1.03015 1.19510 0.91717 0.94548 0.82102 0.92962 1.20910 1.32232 1.13224 0.89222 0.91736 1.24889 0.94879 0.95012 0.98979 1.69891 1.35761 1.22379 1.23991 0.86511 0.79182 0.79532 0.81878 1.20181 1.21198 1.20212 1.59473 1.55720 1.03427 0.99123 1.22434 0.97584 0.87895 1.03400 1.23902 0.88442 0.93812 0.86272 1.75200 1.20086 1.13642 1.11718 1.77861 1.10878 1.17324 0.97554 1.82392 1.12620 0.99588 1.15228 1.51434 1.34368 1.25993 1.07826 1.21981 0.85434 0.88246 1.02571 1.22977 0.93283 0.96782 1.02921 0.87922 1.22919 0.96999 0.97963 1.00379 1.23428 1.00732 0.81522 0.97643 1.89148 1.25422 1.22281 1.92461 1.23477 0.82249 0.99063 0.97507 0.88863 0.93939 0.95553 0.92529 0.94011 0.93128 0.87914 0.87645 0.88139 0.89630 0.90020 0.88981 0.92243 0.91615 0.89143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.16 8.18 37.16 0.30 -3.85 16 2 C 0.23 5.37 2.02 -68.86 -0.14 5.23 16 3 H 0.05 1.44 7.98 -51.93 -0.41 1.03 16 4 C -0.52 -13.00 7.88 -34.44 -0.27 -13.27 16 5 H 0.06 1.56 7.14 -52.49 -0.37 1.19 16 6 C 0.07 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.88 -24.15 11.32 55.43 0.63 -23.52 16 8 Si 0.90 20.06 29.54 -169.99 -5.02 15.04 16 9 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 10 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 12 N -0.45 -8.87 4.72 -176.42 -0.83 -9.70 16 13 C 0.03 0.55 8.51 60.07 0.51 1.06 16 14 C 0.44 8.50 6.74 -320.42 -2.16 6.34 16 15 N -0.35 -7.53 9.24 30.10 0.28 -7.26 16 16 N -0.04 -0.82 13.38 60.35 0.81 -0.01 16 17 N -0.11 -1.98 13.93 60.35 0.84 -1.14 16 18 N -0.40 -6.34 3.59 -61.86 -0.22 -6.57 16 19 C 0.14 1.58 5.60 -4.04 -0.02 1.55 16 20 C -0.14 -1.58 3.35 -89.05 -0.30 -1.88 16 21 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 22 C -0.14 -1.21 6.74 -25.16 -0.17 -1.38 16 23 C 0.04 0.38 7.63 37.93 0.29 0.67 16 24 O -0.37 -4.77 11.65 -35.23 -0.41 -5.18 16 25 C 0.05 0.66 7.09 37.94 0.27 0.93 16 26 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 27 H 0.04 0.99 5.84 -51.93 -0.30 0.68 16 28 H 0.03 0.58 6.46 -51.93 -0.34 0.24 16 29 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.04 0.70 6.58 -51.93 -0.34 0.36 16 31 H 0.05 0.64 5.89 -51.93 -0.31 0.33 16 32 H 0.10 1.72 6.71 -51.93 -0.35 1.37 16 33 H 0.11 1.04 5.85 -51.93 -0.30 0.73 16 34 H 0.10 0.91 7.95 -51.93 -0.41 0.49 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 0.50 7.73 -51.93 -0.40 0.10 16 37 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.76 7.73 -51.93 -0.40 0.36 16 40 H 0.09 1.26 8.14 -51.92 -0.42 0.84 16 LS Contribution 318.68 15.07 4.80 4.80 Total: -1.00 -29.40 318.68 -6.42 -35.82 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -5.51 Total: 0.70 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -1.78 Total: -2.98 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: 1.50 Total: -48.20 kcal Atomic # 8 Polarization: -4.77 SS G_CDS: -0.41 Total: -5.18 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.40 -6.42 -35.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335322768.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.860 kcal (2) G-P(sol) polarization free energy of solvation -29.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds