Wall clock time and date at job start Tue Mar 31 2020 05:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46811 * 2 1 4 4 C 1.50699 * 109.47695 * 120.00172 * 2 1 3 5 5 H 1.07996 * 120.00136 * 119.99442 * 4 2 1 6 6 C 1.37878 * 119.99471 * 300.00184 * 4 2 1 7 7 N 1.31513 * 120.00717 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99565 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47381 * 59.99891 * 8 6 4 10 10 H 1.48503 * 109.47035 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.47013 * 299.99602 * 8 6 4 12 12 N 1.46904 * 109.47107 * 240.00607 * 2 1 3 13 13 C 1.46901 * 110.99301 * 306.04174 * 12 2 1 14 14 C 1.38378 * 111.00383 * 69.99364 * 12 2 1 15 15 N 1.31476 * 126.43560 * 345.21700 * 14 12 2 16 16 N 1.28427 * 110.50408 * 179.81490 * 15 14 12 17 17 N 1.28910 * 110.31667 * 0.46258 * 16 15 14 18 18 N 1.35309 * 126.43834 * 165.53046 * 14 12 2 19 19 C 1.46497 * 127.38409 * 359.97438 * 18 14 12 20 20 C 1.53001 * 109.46915 * 274.18036 * 19 18 14 21 21 H 1.09005 * 110.46074 * 51.84004 * 20 19 18 22 22 C 1.54508 * 110.51141 * 174.44734 * 20 19 18 23 23 C 1.54479 * 104.06220 * 118.64139 * 22 20 19 24 24 O 1.44421 * 104.80532 * 23.98184 * 23 22 20 25 25 C 1.44427 * 105.27250 * 319.48211 * 24 23 22 26 26 H 1.08997 * 109.47095 * 299.99549 * 1 2 3 27 27 H 1.08994 * 109.47611 * 60.00209 * 1 2 3 28 28 H 1.09005 * 109.46811 * 180.02562 * 1 2 3 29 29 H 0.96991 * 120.00323 * 180.02562 * 7 6 4 30 30 H 1.08996 * 109.47462 * 66.02238 * 13 12 2 31 31 H 1.09006 * 109.46901 * 186.02244 * 13 12 2 32 32 H 1.08997 * 109.47620 * 306.01790 * 13 12 2 33 33 H 1.08998 * 109.47026 * 34.17383 * 19 18 14 34 34 H 1.09000 * 109.47191 * 154.17663 * 19 18 14 35 35 H 1.08999 * 110.51187 * 237.29090 * 22 20 19 36 36 H 1.09000 * 110.50943 * 359.97438 * 22 20 19 37 37 H 1.09005 * 110.36902 * 142.81331 * 23 22 20 38 38 H 1.08997 * 110.37317 * 265.14260 * 23 22 20 39 39 H 1.08989 * 110.37705 * 281.68356 * 25 24 23 40 40 H 1.09010 * 110.36871 * 159.34064 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6994 -0.2393 2.4827 7 7 0.9436 0.8302 2.6035 8 14 2.3216 -1.1203 4.0078 9 1 3.8065 -1.1209 4.0080 10 1 1.8272 -0.4199 5.2204 11 1 1.8260 -2.5203 4.0076 12 7 2.0197 -0.6924 -1.1995 13 6 1.4343 -2.0354 -1.3078 14 6 1.7683 0.0515 -2.3390 15 7 0.9509 1.0765 -2.4378 16 7 0.9546 1.5411 -3.6350 17 7 1.7524 0.8543 -4.3791 18 7 2.3131 -0.1430 -3.5621 19 6 3.2806 -1.1718 -3.9516 20 6 4.6975 -0.6803 -3.6487 21 1 4.7693 -0.3372 -2.6165 22 6 5.7282 -1.7988 -3.9203 23 6 6.6314 -1.2156 -5.0295 24 8 6.4997 0.2165 -4.8978 25 6 5.1000 0.4464 -4.6260 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 0.7096 1.1617 3.4844 30 1 0.3608 -1.9513 -1.4766 31 1 1.8929 -2.5653 -2.1427 32 1 1.6150 -2.5861 -0.3847 33 1 3.0852 -2.0854 -3.3901 34 1 3.1863 -1.3739 -5.0185 35 1 6.3111 -2.0072 -3.0232 36 1 5.2282 -2.7021 -4.2700 37 1 7.6671 -1.5174 -4.8732 38 1 6.2849 -1.5400 -6.0107 39 1 4.5185 0.3770 -5.5452 40 1 4.9592 1.4215 -4.1595 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335322768.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:36 Heat of formation + Delta-G solvation = 71.679825 kcal Electronic energy + Delta-G solvation = -23112.231932 eV Core-core repulsion = 19771.851311 eV Total energy + Delta-G solvation = -3340.380621 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.98423 -40.50430 -39.35239 -36.64748 -34.89257 -33.35851 -32.40384 -30.75672 -30.33104 -28.18654 -27.31019 -26.84097 -24.18448 -24.05725 -23.29751 -21.75927 -21.29645 -18.66927 -18.12223 -17.68312 -17.60361 -17.25137 -16.56183 -16.39924 -16.35836 -15.76799 -15.20042 -14.94797 -14.55680 -14.46332 -13.93509 -13.89346 -13.49821 -13.28763 -13.10638 -12.95080 -12.75749 -12.67933 -12.57767 -12.36389 -12.26655 -12.11087 -11.99859 -11.76348 -11.64079 -11.30425 -11.28008 -10.95668 -10.81604 -10.49758 -9.56900 -8.11279 -6.26288 0.00986 0.79374 1.29017 1.48554 1.50081 1.57435 2.40781 2.74656 2.93707 3.18691 3.22158 3.49985 3.58037 3.71457 3.86183 4.03284 4.17823 4.23927 4.30359 4.34843 4.43580 4.48107 4.60956 4.66718 4.71783 4.82716 4.88262 4.95117 4.98214 5.04372 5.10225 5.14303 5.16994 5.48731 5.55717 5.66979 5.78606 5.91042 6.18568 6.38621 6.82533 7.42694 7.54325 8.94918 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.018058 B = 0.005339 C = 0.004525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.170185 B = 5242.702434 C = 6185.702797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.236 3.764 3 H 0.004 0.996 4 C -0.522 4.522 5 H 0.076 0.924 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.966 3.034 9 H -0.272 1.272 10 H -0.291 1.291 11 H -0.263 1.263 12 N -0.449 5.449 13 C 0.031 3.969 14 C 0.430 3.570 15 N -0.386 5.386 16 N -0.064 5.064 17 N -0.097 5.097 18 N -0.376 5.376 19 C 0.129 3.871 20 C -0.136 4.136 21 H 0.070 0.930 22 C -0.134 4.134 23 C 0.037 3.963 24 O -0.402 6.402 25 C 0.055 3.945 26 H 0.063 0.937 27 H 0.040 0.960 28 H 0.038 0.962 29 H 0.262 0.738 30 H 0.035 0.965 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.130 0.870 34 H 0.135 0.865 35 H 0.085 0.915 36 H 0.115 0.885 37 H 0.106 0.894 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.104 -11.522 -13.496 19.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.130 3.870 3 H 0.022 0.978 4 C -0.560 4.560 5 H 0.094 0.906 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.792 3.208 9 H -0.197 1.197 10 H -0.217 1.217 11 H -0.187 1.187 12 N -0.173 5.173 13 C -0.115 4.115 14 C 0.065 3.935 15 N -0.245 5.245 16 N -0.060 5.060 17 N -0.085 5.085 18 N -0.176 5.176 19 C 0.009 3.991 20 C -0.156 4.156 21 H 0.089 0.911 22 C -0.172 4.172 23 C -0.039 4.039 24 O -0.321 6.321 25 C -0.022 4.022 26 H 0.082 0.918 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.114 0.886 32 H 0.119 0.881 33 H 0.148 0.852 34 H 0.153 0.847 35 H 0.103 0.897 36 H 0.134 0.866 37 H 0.124 0.876 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.081 -10.314 -14.030 19.197 hybrid contribution -0.278 -0.300 1.441 1.498 sum 7.804 -10.614 -12.589 18.222 Atomic orbital electron populations 1.22281 0.98621 0.99646 1.01406 1.19086 0.91435 0.92502 0.83958 0.97809 1.21227 1.31840 1.13288 0.89661 0.90619 1.25733 0.95058 0.95620 1.02079 1.70058 1.37219 1.24027 1.24374 0.85481 0.78601 0.78830 0.77922 1.19738 1.21743 1.18741 1.59379 1.55721 1.04308 0.97937 1.22595 0.97532 0.86192 1.05212 1.23738 0.88954 0.93688 0.87151 1.75066 1.21863 1.14911 1.12648 1.77841 1.12265 1.18440 0.97427 1.82266 1.11606 0.99338 1.15260 1.51647 1.33879 1.25823 1.06253 1.22568 0.83948 0.87456 1.05092 1.22880 0.94284 0.97696 1.00719 0.91104 1.22924 0.96009 0.97877 1.00406 1.23716 1.01939 0.79391 0.98876 1.89123 1.25344 1.25033 1.92644 1.23399 0.82713 0.98165 0.97949 0.91842 0.94107 0.94254 0.92837 0.94671 0.88635 0.88136 0.85237 0.84737 0.89671 0.86630 0.87619 0.90153 0.90593 0.92082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.76 8.18 71.98 0.59 -7.18 16 2 C 0.24 11.49 2.02 44.17 0.09 11.58 16 3 H 0.00 0.23 7.98 -2.38 -0.02 0.21 16 4 C -0.52 -26.19 7.88 25.60 0.20 -25.99 16 5 H 0.08 3.56 7.14 -2.91 -0.02 3.54 16 6 C 0.01 0.77 5.30 84.66 0.45 1.22 16 7 N -0.92 -51.64 11.32 21.45 0.24 -51.40 16 8 Si 0.97 40.87 29.54 68.60 2.03 42.90 16 9 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 10 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 12 N -0.45 -17.29 4.72 -712.08 -3.36 -20.66 16 13 C 0.03 0.92 8.51 127.69 1.09 2.01 16 14 C 0.43 16.45 6.74 260.65 1.76 18.21 16 15 N -0.39 -17.08 9.24 -58.70 -0.54 -17.62 16 16 N -0.06 -2.63 13.38 37.02 0.50 -2.14 16 17 N -0.10 -3.38 13.93 37.02 0.52 -2.86 16 18 N -0.38 -11.40 3.59 -349.63 -1.25 -12.65 16 19 C 0.13 2.44 5.60 86.38 0.48 2.92 16 20 C -0.14 -2.78 3.35 -9.78 -0.03 -2.81 16 21 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 22 C -0.13 -1.75 6.74 31.61 0.21 -1.54 16 23 C 0.04 0.53 7.63 72.48 0.55 1.08 16 24 O -0.40 -9.71 11.65 -148.98 -1.74 -11.45 16 25 C 0.05 1.29 7.09 72.49 0.51 1.81 16 26 H 0.06 3.46 6.07 -2.39 -0.01 3.45 16 27 H 0.04 1.96 5.84 -2.39 -0.01 1.94 16 28 H 0.04 1.74 6.46 -2.38 -0.02 1.72 16 29 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 30 H 0.03 1.11 6.58 -2.39 -0.02 1.09 16 31 H 0.10 1.99 5.89 -2.38 -0.01 1.98 16 32 H 0.10 3.11 6.71 -2.39 -0.02 3.09 16 33 H 0.13 1.88 5.85 -2.39 -0.01 1.86 16 34 H 0.13 1.73 7.95 -2.39 -0.02 1.71 16 35 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.12 0.76 7.73 -2.39 -0.02 0.75 16 37 H 0.11 1.23 8.14 -2.38 -0.02 1.21 16 38 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.08 1.61 7.73 -2.39 -0.02 1.59 16 40 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 Total: -1.00 -66.80 318.68 3.34 -63.46 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 1.05 Total: 11.09 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: 5.90 Total: 1.31 kcal Atomic # 7 Polarization: -103.42 SS G_CDS: -3.91 Total: -107.32 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: -1.74 Total: -11.45 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal Total: -66.80 3.34 -63.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335322768.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.143 kcal (2) G-P(sol) polarization free energy of solvation -66.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds