Wall clock time and date at job start Tue Mar 31 2020 05:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.47207 * 2 1 4 4 C 1.50702 * 109.47358 * 240.00029 * 2 1 3 5 5 H 1.08001 * 119.99422 * 304.68541 * 4 2 1 6 6 C 1.37871 * 120.00285 * 124.68825 * 4 2 1 7 7 N 1.31513 * 120.00317 * 179.81593 * 6 4 2 8 8 Si 1.86803 * 120.00036 * 359.81342 * 6 4 2 9 9 H 1.48501 * 109.47084 * 84.55108 * 8 6 4 10 10 H 1.48496 * 109.47248 * 204.55327 * 8 6 4 11 11 H 1.48506 * 109.47126 * 324.55256 * 8 6 4 12 12 N 1.46899 * 109.47009 * 120.00051 * 2 1 3 13 13 C 1.46900 * 111.00362 * 58.95102 * 12 2 1 14 14 C 1.38390 * 111.00012 * 294.99737 * 12 2 1 15 15 N 1.31467 * 126.43690 * 70.71977 * 14 12 2 16 16 N 1.28425 * 110.51088 * 179.73824 * 15 14 12 17 17 N 1.28906 * 110.31452 * 359.97438 * 16 15 14 18 18 N 1.35306 * 126.43881 * 250.40733 * 14 12 2 19 19 C 1.46495 * 127.38515 * 0.23735 * 18 14 12 20 20 C 1.53007 * 109.47204 * 94.03129 * 19 18 14 21 21 H 1.09000 * 110.43425 * 303.91358 * 20 19 18 22 22 C 1.54802 * 110.48906 * 181.22177 * 20 19 18 23 23 C 1.54999 * 102.09440 * 220.44602 * 22 20 19 24 24 O 1.44383 * 103.49049 * 37.02337 * 23 22 20 25 25 C 1.43745 * 106.97274 * 319.94376 * 24 23 22 26 26 H 1.08992 * 109.47240 * 181.44313 * 1 2 3 27 27 H 1.08999 * 109.47271 * 301.44702 * 1 2 3 28 28 H 1.09007 * 109.46709 * 61.44061 * 1 2 3 29 29 H 0.97001 * 120.00317 * 179.97438 * 7 6 4 30 30 H 1.08999 * 109.46753 * 299.16793 * 13 12 2 31 31 H 1.09005 * 109.46562 * 59.16259 * 13 12 2 32 32 H 1.09001 * 109.47253 * 179.16171 * 13 12 2 33 33 H 1.08997 * 109.47478 * 214.03584 * 19 18 14 34 34 H 1.09005 * 109.47154 * 334.03991 * 19 18 14 35 35 H 1.09001 * 110.91099 * 338.64366 * 22 20 19 36 36 H 1.09003 * 110.90922 * 102.24996 * 22 20 19 37 37 H 1.09005 * 110.61852 * 278.52481 * 23 22 20 38 38 H 1.08994 * 110.75468 * 155.59364 * 23 22 20 39 39 H 1.09003 * 109.87862 * 267.08682 * 25 24 23 40 40 H 1.08998 * 110.00255 * 146.00467 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 1.7105 -1.7197 -1.4404 6 6 2.9028 -0.0719 -2.0881 7 7 3.3441 -0.6931 -3.1599 8 14 3.4554 1.6757 -1.7276 9 1 4.6080 1.6473 -0.7916 10 1 3.8618 2.3374 -2.9933 11 1 2.3357 2.4318 -1.1111 12 7 2.0196 -0.6925 1.1994 13 6 1.5282 -2.0761 1.2460 14 6 1.6702 -0.0032 2.3475 15 7 0.4614 0.1127 2.8512 16 7 0.4874 0.8142 3.9266 17 7 1.6925 1.1915 4.1858 18 7 2.5092 0.6732 3.1655 19 6 3.9584 0.8307 3.0201 20 6 4.2577 2.1358 2.2795 21 1 3.7443 2.1542 1.3182 22 6 5.7835 2.3111 2.0857 23 6 5.9743 3.8242 2.3622 24 8 5.0386 4.0923 3.4285 25 6 3.8439 3.3486 3.1354 26 1 -0.3633 -1.0273 0.0259 27 1 -0.3634 0.5361 0.8767 28 1 -0.3633 0.4913 -0.9027 29 1 3.9562 -0.2438 -3.7635 30 1 0.4387 -2.0738 1.2790 31 1 1.8637 -2.6109 0.3574 32 1 1.9177 -2.5702 2.1362 33 1 4.4218 0.8580 4.0062 34 1 4.3601 -0.0090 2.4530 35 1 6.3388 1.7109 2.8066 36 1 6.0773 2.0620 1.0660 37 1 5.7261 4.4104 1.4773 38 1 6.9943 4.0322 2.6852 39 1 3.1453 3.9737 2.5791 40 1 3.3802 3.0080 4.0611 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335322769.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:39 Heat of formation + Delta-G solvation = 88.548089 kcal Electronic energy + Delta-G solvation = -23674.376323 eV Core-core repulsion = 20334.727165 eV Total energy + Delta-G solvation = -3339.649158 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.60897 -39.58106 -37.74841 -35.40842 -32.98312 -32.28019 -31.13085 -29.78402 -29.41479 -26.77695 -25.79567 -25.50003 -23.13337 -22.44407 -21.86273 -20.84248 -19.56235 -17.48773 -16.96890 -16.66675 -16.51642 -16.04393 -15.61585 -15.06756 -14.70889 -14.19888 -13.97344 -13.43531 -13.37644 -13.07293 -12.87360 -12.66829 -12.39558 -11.94953 -11.89408 -11.68658 -11.62967 -11.50154 -11.15769 -11.10242 -11.00486 -10.82652 -10.67319 -10.31710 -10.02013 -9.96185 -9.78314 -9.60574 -9.28104 -8.92818 -8.18062 -6.38772 -4.41415 1.33001 2.04463 2.66358 3.00994 3.10347 3.13766 3.80164 4.05944 4.12064 4.29063 4.42288 4.55248 4.80298 4.99419 5.03015 5.05739 5.12449 5.28201 5.39649 5.54850 5.59490 5.64517 5.68185 5.77535 5.81965 5.89862 5.96476 5.99526 6.06704 6.32367 6.36988 6.47393 6.53983 6.71140 6.76022 7.00274 7.19735 7.52248 7.69144 8.23218 8.65554 8.87631 9.21520 10.72300 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.013147 B = 0.009215 C = 0.006110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.328902 B = 3037.670995 C = 4581.301115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.177 3.823 3 H 0.049 0.951 4 C -0.496 4.496 5 H 0.084 0.916 6 C 0.084 3.916 7 N -0.881 5.881 8 Si 0.872 3.128 9 H -0.266 1.266 10 H -0.285 1.285 11 H -0.269 1.269 12 N -0.469 5.469 13 C 0.042 3.958 14 C 0.431 3.569 15 N -0.357 5.357 16 N -0.046 5.046 17 N -0.105 5.105 18 N -0.376 5.376 19 C 0.141 3.859 20 C -0.144 4.144 21 H 0.092 0.908 22 C -0.146 4.146 23 C 0.046 3.954 24 O -0.376 6.376 25 C 0.049 3.951 26 H 0.054 0.946 27 H 0.046 0.954 28 H 0.055 0.945 29 H 0.269 0.731 30 H 0.044 0.956 31 H 0.098 0.902 32 H 0.049 0.951 33 H 0.103 0.897 34 H 0.118 0.882 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.060 0.940 38 H 0.096 0.904 39 H 0.057 0.943 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.294 3.924 8.945 11.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.075 3.925 3 H 0.067 0.933 4 C -0.535 4.535 5 H 0.102 0.898 6 C -0.122 4.122 7 N -0.517 5.517 8 Si 0.700 3.300 9 H -0.191 1.191 10 H -0.211 1.211 11 H -0.195 1.195 12 N -0.198 5.198 13 C -0.105 4.105 14 C 0.066 3.934 15 N -0.214 5.214 16 N -0.042 5.042 17 N -0.092 5.092 18 N -0.174 5.174 19 C 0.018 3.982 20 C -0.164 4.164 21 H 0.111 0.889 22 C -0.184 4.184 23 C -0.031 4.031 24 O -0.295 6.295 25 C -0.027 4.027 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.117 0.883 32 H 0.068 0.932 33 H 0.121 0.879 34 H 0.136 0.864 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.079 0.921 38 H 0.114 0.886 39 H 0.075 0.925 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.047 4.507 9.879 11.974 hybrid contribution 0.370 0.596 -0.762 1.036 sum 5.417 5.103 9.117 11.769 Atomic orbital electron populations 1.22509 0.98387 1.01701 1.00678 1.20098 0.91747 0.94770 0.85905 0.93285 1.20776 1.27319 1.03011 1.02392 0.89821 1.25057 0.94610 0.97712 0.94794 1.69860 1.31544 1.37525 1.12753 0.86972 0.79474 0.85390 0.78176 1.19141 1.21131 1.19467 1.60615 1.58808 1.03229 0.97169 1.22291 0.99024 0.86408 1.02808 1.24025 0.84717 0.91907 0.92709 1.75042 1.19207 1.20120 1.07076 1.77846 1.12075 1.06265 1.08043 1.82414 0.96932 1.20697 1.09121 1.51633 1.09928 1.37758 1.18084 1.21994 0.73966 0.99452 1.02763 1.23020 0.97958 0.94831 1.00559 0.88928 1.23146 0.93828 0.97467 1.03935 1.23571 0.94315 0.94313 0.90887 1.88863 1.25622 1.69424 1.45618 1.23303 0.87925 0.91256 1.00265 0.92692 0.93474 0.92573 0.92072 0.93698 0.88344 0.93230 0.87862 0.86394 0.89636 0.89122 0.92133 0.88581 0.92502 0.88522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.55 8.40 37.16 0.31 -3.24 16 2 C 0.18 3.84 2.28 -68.87 -0.16 3.69 16 3 H 0.05 1.12 4.50 -51.93 -0.23 0.88 16 4 C -0.50 -12.23 8.19 -34.44 -0.28 -12.51 16 5 H 0.08 2.21 7.16 -52.49 -0.38 1.84 16 6 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 7 N -0.88 -24.12 13.96 55.43 0.77 -23.34 16 8 Si 0.87 19.23 26.30 -169.99 -4.47 14.76 16 9 H -0.27 -5.39 6.94 56.52 0.39 -5.00 16 10 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.27 -5.93 6.41 56.52 0.36 -5.56 16 12 N -0.47 -9.10 4.74 -176.42 -0.84 -9.94 16 13 C 0.04 0.74 8.73 60.06 0.52 1.26 16 14 C 0.43 8.13 6.27 -320.41 -2.01 6.12 16 15 N -0.36 -7.07 9.86 30.10 0.30 -6.78 16 16 N -0.05 -0.89 13.38 60.35 0.81 -0.09 16 17 N -0.11 -1.87 12.87 60.35 0.78 -1.09 16 18 N -0.38 -6.32 3.49 -61.86 -0.22 -6.54 16 19 C 0.14 1.89 5.62 -4.04 -0.02 1.87 16 20 C -0.14 -2.00 3.30 -89.09 -0.29 -2.29 16 21 H 0.09 1.54 7.01 -51.93 -0.36 1.17 16 22 C -0.15 -1.65 6.71 -24.73 -0.17 -1.81 16 23 C 0.05 0.51 7.72 38.21 0.29 0.81 16 24 O -0.38 -5.24 11.52 -35.23 -0.41 -5.64 16 25 C 0.05 0.70 7.20 37.73 0.27 0.97 16 26 H 0.05 1.08 6.32 -51.93 -0.33 0.75 16 27 H 0.05 0.96 6.03 -51.93 -0.31 0.65 16 28 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.04 0.79 6.23 -51.93 -0.32 0.47 16 31 H 0.10 1.80 6.58 -51.93 -0.34 1.46 16 32 H 0.05 0.77 8.13 -51.93 -0.42 0.35 16 33 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.12 1.54 8.12 -51.93 -0.42 1.12 16 35 H 0.09 0.79 7.87 -51.93 -0.41 0.38 16 36 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.10 1.40 6.58 -51.93 -0.34 1.05 16 LS Contribution 318.15 15.07 4.79 4.79 Total: -1.00 -27.91 318.15 -5.70 -33.61 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -5.59 Total: 3.35 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -1.62 Total: -3.10 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: 1.60 Total: -47.77 kcal Atomic # 8 Polarization: -5.24 SS G_CDS: -0.41 Total: -5.64 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -4.47 Total: 14.76 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.91 -5.70 -33.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335322769.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.161 kcal (2) G-P(sol) polarization free energy of solvation -27.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds